AT1G58120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011711
Physical Location & Seq
Forward (+)
21520401 .. 21522457
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58120.1

Sequence Viewer

Length: 1263 bp
ATGGTGTTTGTTACTGTCCAAGACTTTCACTCCATGTGCCAAAAGCATTGTCACTACCTCTTGAAAAAGAGAGACCGCTCGAGCTCCTCTACAAGCTCTGCGGATACTTTCCTCAAGGCTTCTCGCTCTGAAGTCTTGAGTCTCTTTATGAGATCAACGCTTTTGGCTTTGTTGTTTCTGTCATTTACTTGGTTAAGTCTCCTGAAATATGGAACTACTGCAACCGCTCCATCTAAGTCGGTTGAATCTGACCTTCCTGAATTACTACCTTTGCTCCTCAACGATTTGGAGAAGCAAGGTCTCTTTAAGATGGGTGATAAAGCACTCTTCCTAAGTGGAGGAGATGATGAGGTCACTGTTTCTTCATACTCTCAAACAGTGATCGAAACTGATATGCTTCTTGTATCTGCAAGCGATCAGGAGATGCAGAGCATGGTACCAGATGAGACCTTTGATTTCGCCTTTGCGCATTCTCGCCACATTGACTCTGCTGAATTTATAGACAGGACTCTTAAAGTTGGCGGCATCTTCACCGTCCAGCTCAACCTTCAAGATCTTCCTCCAAATTTCTTGAAACATCCAAACTACGAGATAGTTTACGTAAAGAGCTCTGAGTATACGGTAATGACGATGAGGAAAACAGGGGAAACAGAGCAAAAACAGAGCTTAGTCGCCACCGGGAGAAAGCTTCTCGGTATCACAGAAGAAGATGCCAGGGAAAAAGCTTTGAGAAAGCTAGAGGATGTTCTCCTTGAACCACCAAGAGCAGCTTCAAGGAAATCAAGAACATACTTCAAACGGACTCGGTACCTCCCAGACCTTATGGGAGACAACTTGGACCTGGAGAGCTACTCGAGGCGGGTATTCATCGATGTGGGAAACGGAAAAGGAAGCAGCGGAATGGAATGGTTTGTTGAAAATTACCCAACAAGGAATCAGAAGTTTGAGATGTACAAGATTGAGACGGTGAACGATGAGATGAGCCTAGAATCTGAGAAAATGGGAATGACGGAGTGGCTGAAAGAGAATGTCAAGGAAGAGGAATACGTGGTGATGAAGGCCGAGGCGGAAATGGTGGAGGAGATGATGAGGAGCAAGTCGATAAAAATGGTGGATGAGCTTTTCTTGGAGTGCAAGCCAAAGGGTTTAGGGCTAAGGGGAAGAAAGATGCAGAGTAAAAGTGGTAGGGCTTATTGGGAGTGTTTGGCTCTTTATGGCAAACTAAGAGATGAAGGTGTTGCTGTGCATCAATGGTGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

48.13

Weight (kDa)

5.72

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7870 PF25276 243 - 419 1.1e-76 Domain of unknown function (DUF7870)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 468
Acc65I GGTACC 2 cut(s) 436, 807
AccB1I GGYRCC 2 cut(s) 436, 807
AccBSI CCGCTC 2 cut(s) 78, 227
AccI GTMKAC 1 cut(s) 617
AciI CCGC 7 cut(s) 76, 101, 225, 522, 859, 897, 1067
AcsI RAATTY 2 cut(s) 494, 565
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 3 cut(s) 438, 809, 953
AgsI TTSAA 8 cut(s) 64, 245, 551, 574, 755, 774, 796, 917
AjnI CCWGG 2 cut(s) 713, 840
AjuI GAANNNNNNNTTGG 2 cut(s) 754, 786
Alw21I GWGCWC 2 cut(s) 86, 611
Alw26I GTCTC 7 cut(s) 66, 146, 203, 305, 440, 822, 956
Ama87I CYCGRG 2 cut(s) 79, 853
AoxI GGCC 1 cut(s) 1059
ApeKI GCWGC 2 cut(s) 767, 894
ApoI RAATTY 2 cut(s) 494, 565
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
Asp718I GGTACC 2 cut(s) 436, 807
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 838
AsuC2I CCSGG 1 cut(s) 679
AsuHPI GGTGA 4 cut(s) 326, 523, 979, 1063
AvaI CYCGRG 2 cut(s) 79, 853
AvaII GGWCC 1 cut(s) 838
BanI GGYRCC 2 cut(s) 436, 807
BanII GRGCYC 2 cut(s) 86, 611
Bbv12I GWGCWC 2 cut(s) 86, 611
BbvI GCAGC 2 cut(s) 779, 906
BccI CCATC 2 cut(s) 238, 304
BciT130I CCWGG 2 cut(s) 715, 842
BciVI GTATCC 1 cut(s) 97
BcnI CCSGG 1 cut(s) 679
BcoDI GTCTC 7 cut(s) 66, 146, 203, 305, 440, 822, 956
BfaI CTAG 2 cut(s) 737, 986
BfuI GTATCC 1 cut(s) 97
BglII AGATCT 1 cut(s) 553
BisI GCNGC 3 cut(s) 523, 768, 895
BlsI GCNGC 3 cut(s) 524, 769, 896
Bme1390I CCNGG 3 cut(s) 679, 715, 842
Bme18I GGWCC 1 cut(s) 838
BmeT110I CYCGRG 2 cut(s) 79, 853
BmgT120I GGNCC 1 cut(s) 838
BmiI GGNNCC 2 cut(s) 438, 809
BmrFI CCNGG 3 cut(s) 679, 715, 842
BmsI GCATC 5 cut(s) 414, 534, 700, 1158, 1255
BplI GAGNNNNNCTC 2 cut(s) 836, 868
BpmI CTGGAG 1 cut(s) 863
Bpu10I CCTNAGC 1 cut(s) 1154
BpuEI CTTGAG 2 cut(s) 98, 157
BpuMI CCSGG 1 cut(s) 679
Bsa29I ATCGAT 1 cut(s) 870
BsaAI YACGTR 2 cut(s) 601, 1048
BsaI GGTCTC 3 cut(s) 66, 305, 440
BsaJI CCNNGG 2 cut(s) 714, 1062
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 258, 288
BseBI CCWGG 2 cut(s) 715, 842
BseCI ATCGAT 1 cut(s) 870
BseDI CCNNGG 2 cut(s) 714, 1062
BseGI GGATG 3 cut(s) 577, 748, 1120
BseMII CTCAG 2 cut(s) 603, 984
BseRI GAGGAG 5 cut(s) 76, 266, 354, 1094, 1105
BseXI GCAGC 2 cut(s) 779, 906
BshFI GGCC 1 cut(s) 1061
BshNI GGYRCC 2 cut(s) 436, 807
BshVI ATCGAT 1 cut(s) 870
BsiHKAI GWGCWC 2 cut(s) 86, 611
BsiHKCI CYCGRG 2 cut(s) 79, 853
BsiSI CCGG 1 cut(s) 678
BsmAI GTCTC 7 cut(s) 66, 146, 203, 305, 440, 822, 956
BsmBI CGTCTC 1 cut(s) 956
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 1 cut(s) 1061
Bso31I GGTCTC 3 cut(s) 66, 305, 440
BsoBI CYCGRG 2 cut(s) 79, 853
Bsp1286I GDGCHC 2 cut(s) 86, 611
Bsp1407I TGTACA 1 cut(s) 951
Bsp143I GATC 4 cut(s) 152, 381, 415, 553
BspACI CCGC 7 cut(s) 76, 101, 225, 522, 859, 897, 1067
BspANI GGCC 1 cut(s) 1061
BspCNI CTCAG 2 cut(s) 604, 985
BspDI ATCGAT 1 cut(s) 870
BspLI GGNNCC 2 cut(s) 438, 809
BspT107I GGYRCC 2 cut(s) 436, 807
BspTNI GGTCTC 3 cut(s) 66, 305, 440
BsrBI CCGCTC 2 cut(s) 78, 227
BsrGI TGTACA 1 cut(s) 951
BssECI CCNNGG 2 cut(s) 714, 1062
BssMI GATC 4 cut(s) 152, 381, 415, 553
BssNAI GTATAC 1 cut(s) 618
Bst1107I GTATAC 1 cut(s) 618
Bst2UI CCWGG 2 cut(s) 715, 842
Bst4CI ACNGT 6 cut(s) 16, 358, 379, 535, 622, 967
Bst6I CTCTTC 2 cut(s) 332, 1032
BstAUI TGTACA 1 cut(s) 951
BstBAI YACGTR 2 cut(s) 601, 1048
BstC8I GCNNGC 2 cut(s) 412, 1136
BstDEI CTNAG 7 cut(s) 234, 332, 612, 667, 993, 1154, 1223
BstF5I GGATG 3 cut(s) 577, 748, 1120
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 4 cut(s) 155, 384, 418, 556
BstMAI GTCTC 7 cut(s) 66, 146, 203, 305, 440, 822, 956
BstMBI GATC 4 cut(s) 152, 381, 415, 553
BstNI CCWGG 2 cut(s) 715, 842
BstSCI CCNGG 3 cut(s) 677, 713, 840
BstSNI TACGTA 1 cut(s) 601
BstV1I GCAGC 2 cut(s) 779, 906
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BstZ17I GTATAC 1 cut(s) 618
Bsu15I ATCGAT 1 cut(s) 870
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 1061
BsuTUI ATCGAT 1 cut(s) 870
BtsCI GGATG 3 cut(s) 577, 748, 1120
BtsIMutI CAGTG 2 cut(s) 354, 384
Cac8I GCNNGC 2 cut(s) 412, 1136
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 838
ClaI ATCGAT 1 cut(s) 870
Csp6I GTAC 3 cut(s) 437, 808, 952
CviAII CATG 2 cut(s) 34, 433
CviQI GTAC 3 cut(s) 437, 808, 952
DdeI CTNAG 7 cut(s) 234, 332, 612, 667, 993, 1154, 1223
DpnI GATC 4 cut(s) 154, 383, 417, 555
DpnII GATC 4 cut(s) 152, 381, 415, 553
Eam1104I CTCTTC 2 cut(s) 332, 1032
EarI CTCTTC 2 cut(s) 332, 1032
EciI GGCGGA 1 cut(s) 1082
Ecl136II GAGCTC 2 cut(s) 84, 609
Eco105I TACGTA 1 cut(s) 601
Eco24I GRGCYC 2 cut(s) 86, 611
Eco31I GGTCTC 3 cut(s) 66, 305, 440
Eco47I GGWCC 1 cut(s) 838
Eco53kI GAGCTC 2 cut(s) 84, 609
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 2 cut(s) 79, 853
EcoICRI GAGCTC 2 cut(s) 84, 609
EcoRII CCWGG 2 cut(s) 713, 840
EcoT38I GRGCYC 2 cut(s) 86, 611
Esp3I CGTCTC 1 cut(s) 956
FaeI CATG 2 cut(s) 37, 436
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FatI CATG 2 cut(s) 33, 432
FauI CCCGC 1 cut(s) 852
FblI GTMKAC 1 cut(s) 617
Fnu4HI GCNGC 3 cut(s) 523, 768, 895
FokI GGATG 3 cut(s) 564, 755, 1127
FriOI GRGCYC 2 cut(s) 86, 611
Fsp4HI GCNGC 3 cut(s) 523, 768, 895
FspBI CTAG 2 cut(s) 737, 986
FspI TGCGCA 1 cut(s) 468
GlaI GCGC 1 cut(s) 468
GluI GCNGC 3 cut(s) 523, 768, 895
GsuI CTGGAG 1 cut(s) 863
HaeIII GGCC 1 cut(s) 1061
HapII CCGG 1 cut(s) 678
HhaI GCGC 1 cut(s) 469
Hin1II CATG 2 cut(s) 37, 436
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 2 cut(s) 686, 723
HinfI GANTC 7 cut(s) 139, 245, 485, 508, 802, 934, 989
HpaII CCGG 1 cut(s) 678
HphI GGTGA 4 cut(s) 326, 523, 979, 1063
Hpy166II GTNNAC 3 cut(s) 598, 618, 970
Hpy188I TCNGA 5 cut(s) 130, 250, 613, 939, 994
Hpy188III TCNNGA 8 cut(s) 61, 136, 202, 257, 419, 551, 571, 783
Hpy8I GTNNAC 3 cut(s) 598, 618, 970
HpyAV CCTTC 4 cut(s) 263, 557, 1051, 1226
HpyCH4III ACNGT 6 cut(s) 16, 358, 379, 535, 622, 967
HpyCH4IV ACGT 2 cut(s) 600, 1047
HpyCH4V TGCA 6 cut(s) 221, 410, 427, 1134, 1171, 1246
HpyF3I CTNAG 7 cut(s) 234, 332, 612, 667, 993, 1154, 1223
HpySE526I ACGT 2 cut(s) 600, 1047
Hsp92II CATG 2 cut(s) 37, 436
HspAI GCGC 1 cut(s) 467
KpnI GGTACC 2 cut(s) 440, 811
Kzo9I GATC 4 cut(s) 152, 381, 415, 553
LmnI GCTCC 4 cut(s) 89, 232, 279, 1092
Lsp1109I GCAGC 2 cut(s) 779, 906
LweI GCATC 5 cut(s) 414, 534, 700, 1158, 1255
MaeI CTAG 2 cut(s) 737, 986
MaeII ACGT 2 cut(s) 600, 1047
MaeIII GTNAC 3 cut(s) 10, 50, 352
MalI GATC 4 cut(s) 154, 383, 417, 555
MbiI CCGCTC 2 cut(s) 78, 227
MboI GATC 4 cut(s) 152, 381, 415, 553
MboII GAAGA 8 cut(s) 319, 354, 520, 548, 716, 719, 1049, 1173
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 2 cut(s) 86, 611
MluCI AATT 4 cut(s) 260, 494, 565, 919
MlyI GAGTC 4 cut(s) 148, 479, 502, 796
MseI TTAA 3 cut(s) 194, 306, 513
MslI CAYNNNNRTG 1 cut(s) 872
MspA1I CMGCKG 1 cut(s) 897
MspI CCGG 1 cut(s) 678
MspR9I CCNGG 3 cut(s) 679, 715, 842
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 2 cut(s) 715, 842
NciI CCSGG 1 cut(s) 679
NdeII GATC 4 cut(s) 152, 381, 415, 553
NlaIII CATG 2 cut(s) 37, 436
NlaIV GGNNCC 2 cut(s) 438, 809
NmeAIII GCCGAG 1 cut(s) 1087
NmuCI GTSAC 2 cut(s) 50, 352
NsbI TGCGCA 1 cut(s) 468
PaeR7I CTCGAG 2 cut(s) 79, 853
PcsI WCGNNNNNNNCGW 1 cut(s) 626
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 3 cut(s) 245, 934, 989
PkrI GCNGC 3 cut(s) 524, 769, 896
PleI GAGTC 4 cut(s) 147, 479, 502, 796
PpsI GAGTC 4 cut(s) 147, 479, 502, 796
Ppu21I YACGTR 2 cut(s) 601, 1048
Psp124BI GAGCTC 2 cut(s) 86, 611
Psp6I CCWGG 2 cut(s) 713, 840
PspGI CCWGG 2 cut(s) 713, 840
PspN4I GGNNCC 2 cut(s) 438, 809
PspPI GGNCC 1 cut(s) 838
PspXI VCTCGAGB 2 cut(s) 79, 853
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 3 cut(s) 438, 809, 953
RsaNI GTAC 3 cut(s) 437, 808, 952
RseI CAYNNNNRTG 1 cut(s) 872
SacI GAGCTC 2 cut(s) 86, 611
SaqAI TTAA 3 cut(s) 194, 306, 513
SatI GCNGC 3 cut(s) 523, 768, 895
Sau3AI GATC 4 cut(s) 152, 381, 415, 553
Sau96I GGNCC 1 cut(s) 838
SchI GAGTC 4 cut(s) 148, 479, 502, 796
ScrFI CCNGG 3 cut(s) 679, 715, 842
SduI GDGCHC 2 cut(s) 86, 611
SfaNI GCATC 5 cut(s) 414, 534, 700, 1158, 1255
Sfr274I CTCGAG 2 cut(s) 79, 853
SinI GGWCC 1 cut(s) 838
SlaI CTCGAG 2 cut(s) 79, 853
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 4 cut(s) 79, 113, 136, 853
SmoI CTYRAG 4 cut(s) 79, 113, 136, 853
SnaBI TACGTA 1 cut(s) 601
Sse9I AATT 4 cut(s) 260, 494, 565, 919
SsiI CCGC 7 cut(s) 76, 101, 225, 522, 859, 897, 1067
SspMI CTAG 2 cut(s) 737, 986
SstI GAGCTC 2 cut(s) 86, 611
StyD4I CCNGG 3 cut(s) 677, 713, 840
TaaI ACNGT 6 cut(s) 16, 358, 379, 535, 622, 967
TaiI ACGT 2 cut(s) 603, 1050
TaqI TCGA 5 cut(s) 80, 384, 854, 870, 1100
TasI AATT 4 cut(s) 260, 494, 565, 919
TatI WGTACW 1 cut(s) 951
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 3 cut(s) 245, 934, 989
Tru1I TTAA 3 cut(s) 194, 306, 513
Tru9I TTAA 3 cut(s) 194, 306, 513
TscAI CASTG 2 cut(s) 361, 384
TseFI GTSAC 2 cut(s) 50, 352
TseI GCWGC 2 cut(s) 767, 894
Tsp45I GTSAC 2 cut(s) 50, 352
TspDTI ATGAA 4 cut(s) 354, 856, 1070, 1245
TspGWI ACGGA 3 cut(s) 814, 897, 1025
TspRI CASTG 2 cut(s) 361, 384
VpaK11BI GGWCC 1 cut(s) 838
XapI RAATTY 2 cut(s) 494, 565
XhoI CTCGAG 2 cut(s) 79, 853
XmiI GTMKAC 1 cut(s) 617
XspI CTAG 2 cut(s) 737, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.