Rorug07G0301100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011711
Physical Location & Seq
Forward (+)
29874211 .. 29875210
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0301100.1

Sequence Viewer

Length: 495 bp
ATGGCCTCTGCTCTATTCTTCACTTGTCTCATTACCTGTTCAGTGTTCTTGCTTACTATTCCTTGTTATGTTGCTAATCAGAAAGTTACTCTCTCGCTTTACTATGACTCTTTGAGCACATCTTGTGCTACCTTCATCGTCAAGAATCTTGCTAAGATTTTCGATGATGATCTCATCACCATTCTCAATCTCAGACTGGTTCCTTGGGGTGATGCATACGCCAACAAATCGAACAACAGCACCTCTTTCTGTCAGAACAAGCACTTTGCTTTGATTTACTGCATAGAATTTCAGGCCATAGACGGAAGGCACAAGGAGTGGGAAACTTGCTTCAGTTCATTGGGACTGCCTAAGAAACCCAATTTGGATTGCTACAACAGTTCAAATGCAACAAAGGATTATGAAAATTTTGCTGGCTATGTGTGCAAGGCTTACAAAGGTAACATTGTGCCCATGGCATGTCAGTCTGTACATTTGAAGCAGAAGACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.47

Weight (kDa)

8.0

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 31 - 86 5.9e-09 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 287, 406
AcuI CTGAAG 1 cut(s) 316
AfaI GTAC 1 cut(s) 471
AgsI TTSAA 2 cut(s) 384, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 32
AoxI GGCC 2 cut(s) 3, 294
ApoI RAATTY 2 cut(s) 287, 406
AsuHPI GGTGA 2 cut(s) 169, 221
BaeGI GKGCMC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 203, 453
Bse1I ACTGG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 203, 453
BseJI GATNNNNATC 1 cut(s) 168
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 453
BshFI GGCC 2 cut(s) 5, 296
BsiHKAI GWGCWC 1 cut(s) 119
BslFI GGGAC 1 cut(s) 357
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 2 cut(s) 5, 296
Bsp1286I GDGCHC 2 cut(s) 119, 453
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 1 cut(s) 169
Bsp19I CCATGG 1 cut(s) 453
BspANI GGCC 2 cut(s) 5, 296
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 203, 453
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 2 cut(s) 203, 453
Bst4CI ACNGT 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 3 cut(s) 153, 191, 351
BstDSI CCRYGG 1 cut(s) 453
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstNSI RCATGY 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 453
BstV2I GAAGAC 1 cut(s) 491
BsuRI GGCC 2 cut(s) 5, 296
BtgI CCRYGG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 415
Csp6I GTAC 1 cut(s) 470
CviAII CATG 2 cut(s) 454, 459
CviJI RGCY 4 cut(s) 5, 296, 417, 431
CviKI_1 RGCY 4 cut(s) 5, 296, 417, 431
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 3 cut(s) 153, 191, 351
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 203, 453
Eco57I CTGAAG 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 203, 453
EcoT22I ATGCAT 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 203, 453
FaeI CATG 2 cut(s) 457, 462
FaiI YATR 9 cut(s) 69, 105, 217, 284, 299, 402, 420, 455, 460
FaqI GGGAC 1 cut(s) 357
FatI CATG 2 cut(s) 453, 458
HaeIII GGCC 2 cut(s) 5, 296
Hin1II CATG 2 cut(s) 457, 462
HinfI GANTC 2 cut(s) 107, 145
HphI GGTGA 2 cut(s) 169, 221
Hpy188I TCNGA 3 cut(s) 81, 194, 255
Hpy188III TCNNGA 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 142, 300
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 4 cut(s) 215, 282, 389, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 3 cut(s) 153, 191, 351
Hsp92II CATG 2 cut(s) 457, 462
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 4 cut(s) 49, 182, 278, 399
LweI GCATC 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 85, 440
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 119, 453
MluCI AATT 3 cut(s) 287, 361, 406
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 2 cut(s) 16, 253
Mph1103I ATGCAT 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 423
NcoI CCATGG 1 cut(s) 453
NdeII GATC 1 cut(s) 169
NlaIII CATG 2 cut(s) 457, 462
NlaIV GGNNCC 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 1 cut(s) 462
PfeI GAWTC 1 cut(s) 145
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 201
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
Sau3AI GATC 1 cut(s) 169
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 2 cut(s) 119, 453
SetI ASST 4 cut(s) 38, 134, 245, 442
SfaNI GCATC 1 cut(s) 202
Sse9I AATT 3 cut(s) 287, 361, 406
StyI CCWWGG 2 cut(s) 203, 453
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 2 cut(s) 162, 230
TasI AATT 3 cut(s) 287, 361, 406
TatI WGTACW 1 cut(s) 469
TfiI GAWTC 1 cut(s) 145
TscAI CASTG 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 124, 327, 417
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 48
XapI RAATTY 2 cut(s) 287, 406
XceI RCATGY 1 cut(s) 462
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.