Rroxscaffold_3G00224670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011711
Physical Location & Seq
Forward (+)
7899839 .. 7900912
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224670.1

Sequence Viewer

Length: 1074 bp
ATGGCTTTCGTGATCGTCTCCGTTCCGTGGTTGAAGTCACTTGTTCCCACAACAGCCACCGCTAATGGAATCATCGGCTTCCCCACTGACCCTAATATCGAGCTTGTGCCACTCATCTTCCGCGACTTGGCCAACGAAGGCCTCATCAAAACCCGTCATGGCGAGAAGGCAGTGTTTGTCAGCAGTTGCAATGATGAAGAAGCCATTCAAAGCTCACAGATCCTCAAAGACAACGAAATGGATCTCATTTCCGTGAACGACGAAAACCAACAGAACTCGATCAACGACCTATCTGTTGACTTCGCCTTCGTCTCCGTCGTCCCTTCCGCCATGAAGTTCATCGAAAGGACTCTCAAGGTTGGGGGCATTGTTGCTCTCCAGGACCTCTCCGCCAGGTTTCACATGCCTTCTAACTACAAGATGGTCTACCTCCGAAAACTCGACGCCACCGTGGTGGCCATGAGGAAGATGAGTTCATCGATTTCAACTACTACTTCTTTCACGCGCCGACGCCTATTTGCTGAGGAGGCAAAGAAGGAAGCATTGAAGAATCTAGAAGATGTGCTGCTCGAACCCCCACGTGCTTCATCGGGCAAGTCAAGCCGATACTTGAAGAAAACTCGCTACCTACCCGACTTGATGGGAGACTCGCTCGAGGGATACCCTCGCAGGGTCTTCATCGACGTTGGCTTGCCTGAAAAGGAAGGCGGTAGTGGCACCAGCTGGTTCGCCAAGAACTACCCGACTCGCAACAAGAATTTTGAGATGTACAAGATTGAGACAACCCTGATCGACGAGTCCGGCAAGGGGATTCTTCAGACCGGTATGTCGGGGTGGTTGGAGAAAAATGTGAAGGAGGAAGAGTATGTTGTGATGAAGGCCGAGGCCGAAGTGGTGGAGGAAATGATGCAGGGTAAGGTGATGAACTTGGTCGATGAGCTTTTCTTGGAATGCAAGCCACAAGGGCACAATGGGAAAGGTAATTTGAGCACTCGTAGGGCTTACTGGCAGTGCTTGGCTTTGTACGGACAGCTCAGGGATGAAGGTGTTGCAGTGCACCAATGGTGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

40.16

Weight (kDa)

5.97

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7870 PF25276 182 - 356 1.6e-81 Domain of unknown function (DUF7870)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 826
AccB1I GGYRCC 1 cut(s) 716
AccI GTMKAC 1 cut(s) 426
AccII CGCG 2 cut(s) 123, 505
AciI CCGC 5 cut(s) 60, 121, 327, 390, 708
AclWI GGATC 2 cut(s) 214, 249
AcoI YGGCCR 2 cut(s) 129, 456
AcsI RAATTY 1 cut(s) 757
AcuI CTGAAG 1 cut(s) 800
AcvI CACGTG 1 cut(s) 581
AcyI GRCGYC 2 cut(s) 444, 511
AfaI GTAC 2 cut(s) 770, 1025
AfiI CCNNNNNNNGG 5 cut(s) 27, 127, 670, 807, 1066
AgeI ACCGGT 1 cut(s) 821
AgsI TTSAA 5 cut(s) 34, 209, 486, 547, 613
AjnI CCWGG 2 cut(s) 378, 392
AleI CACNNNNGTG 1 cut(s) 452
AloI GAACNNNNNNTCC 2 cut(s) 457, 489
AluBI AGCT 5 cut(s) 103, 213, 723, 940, 1033
AluI AGCT 5 cut(s) 103, 213, 723, 940, 1033
Alw21I GWGCWC 2 cut(s) 992, 1059
Alw26I GTCTC 4 cut(s) 22, 316, 639, 773
Alw44I GTGCAC 1 cut(s) 1055
AlwI GGATC 2 cut(s) 214, 249
Ama87I CYCGRG 1 cut(s) 653
AoxI GGCC 5 cut(s) 129, 139, 456, 879, 885
ApaLI GTGCAC 1 cut(s) 1055
ApeKI GCWGC 1 cut(s) 565
ApoI RAATTY 1 cut(s) 757
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsiGI ACCGGT 1 cut(s) 821
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 931
AvaI CYCGRG 1 cut(s) 653
AvaII GGWCC 1 cut(s) 382
BaeGI GKGCMC 2 cut(s) 969, 1059
BalI TGGCCA 2 cut(s) 131, 458
BanI GGYRCC 1 cut(s) 716
BbrPI CACGTG 1 cut(s) 581
BbsI GAAGAC 1 cut(s) 667
Bbv12I GWGCWC 2 cut(s) 992, 1059
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 552
BccI CCATC 2 cut(s) 415, 634
BciT130I CCWGG 2 cut(s) 380, 394
BciVI GTATCC 1 cut(s) 653
BcoDI GTCTC 4 cut(s) 22, 316, 639, 773
BfaI CTAG 1 cut(s) 554
BfuI GTATCC 1 cut(s) 653
BglI GCCNNNNNGGC 1 cut(s) 964
BisI GCNGC 1 cut(s) 566
BlsI GCNGC 1 cut(s) 567
Bme1390I CCNGG 2 cut(s) 380, 394
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 718
BmrFI CCNGG 2 cut(s) 380, 394
BmsI GCATC 1 cut(s) 897
BpiI GAAGAC 1 cut(s) 667
BplI GAGNNNNNCTC 2 cut(s) 636, 668
BpmI CTGGAG 1 cut(s) 362
Bpu10I CCTNAGC 2 cut(s) 522, 1034
BpuEI CTTGAG 1 cut(s) 338
Bsa29I ATCGAT 1 cut(s) 479
BsaAI YACGTR 1 cut(s) 581
BsaHI GRCGYC 2 cut(s) 444, 511
BsaJI CCNNGG 3 cut(s) 26, 450, 882
BsaWI WCCGGW 1 cut(s) 821
BsaXI ACNNNNNCTCC 2 cut(s) 848, 878
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 127, 670, 807, 1066
Bse118I RCCGGY 1 cut(s) 821
Bse1I ACTGG 1 cut(s) 1010
Bse3DI GCAATG 1 cut(s) 196
BseBI CCWGG 2 cut(s) 380, 394
BseCI ATCGAT 1 cut(s) 479
BseDI CCNNGG 3 cut(s) 26, 450, 882
BseGI GGATG 1 cut(s) 1045
BseLI CCNNNNNNNGG 5 cut(s) 27, 127, 670, 807, 1066
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 513, 1048
BseNI ACTGG 1 cut(s) 1010
BseRI GAGGAG 1 cut(s) 539
BseSI GKGCMC 2 cut(s) 969, 1059
BseXI GCAGC 1 cut(s) 552
Bsh1236I CGCG 2 cut(s) 123, 505
BshFI GGCC 5 cut(s) 131, 141, 458, 881, 887
BshNI GGYRCC 1 cut(s) 716
BshTI ACCGGT 1 cut(s) 821
BshVI ATCGAT 1 cut(s) 479
BsiHKAI GWGCWC 2 cut(s) 992, 1059
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 2 cut(s) 801, 822
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 5 cut(s) 27, 127, 670, 807, 1066
BsmAI GTCTC 4 cut(s) 22, 316, 639, 773
BsmBI CGTCTC 2 cut(s) 22, 316
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 956
BsnI GGCC 5 cut(s) 131, 141, 458, 881, 887
BsoBI CYCGRG 1 cut(s) 653
Bsp1286I GDGCHC 3 cut(s) 969, 992, 1059
Bsp1407I TGTACA 1 cut(s) 768
Bsp143I GATC 5 cut(s) 12, 219, 241, 279, 789
BspACI CCGC 5 cut(s) 60, 121, 327, 390, 708
BspANI GGCC 5 cut(s) 131, 141, 458, 881, 887
BspCNI CTCAG 2 cut(s) 514, 1047
BspDI ATCGAT 1 cut(s) 479
BspFNI CGCG 2 cut(s) 123, 505
BspLI GGNNCC 1 cut(s) 718
BspPI GGATC 2 cut(s) 214, 249
BspT107I GGYRCC 1 cut(s) 716
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 821
BsrGI TGTACA 1 cut(s) 768
BsrI ACTGG 1 cut(s) 1010
BssAI RCCGGY 1 cut(s) 821
BssECI CCNNGG 3 cut(s) 26, 450, 882
BssMI GATC 5 cut(s) 12, 219, 241, 279, 789
BssNI GRCGYC 2 cut(s) 444, 511
Bst2UI CCWGG 2 cut(s) 380, 394
Bst4CI ACNGT 1 cut(s) 451
Bst6I CTCTTC 1 cut(s) 855
BstACI GRCGYC 2 cut(s) 444, 511
BstAUI TGTACA 1 cut(s) 768
BstBAI YACGTR 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 692, 956
BstDEI CTNAG 2 cut(s) 522, 1034
BstDSI CCRYGG 2 cut(s) 26, 450
BstF5I GGATG 1 cut(s) 1045
BstFNI CGCG 2 cut(s) 123, 505
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 5 cut(s) 15, 222, 244, 282, 792
BstMAI GTCTC 4 cut(s) 22, 316, 639, 773
BstMBI GATC 5 cut(s) 12, 219, 241, 279, 789
BstMWI GCNNNNNNNGC 4 cut(s) 527, 600, 714, 964
BstNI CCWGG 2 cut(s) 380, 394
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 2 cut(s) 378, 392
BstSLI GKGCMC 2 cut(s) 969, 1059
BstUI CGCG 2 cut(s) 123, 505
BstV1I GCAGC 1 cut(s) 552
BstV2I GAAGAC 1 cut(s) 667
BstX2I RGATCY 2 cut(s) 219, 241
BstXI CCANNNNNNTGG 1 cut(s) 454
BstYI RGATCY 2 cut(s) 219, 241
Bsu15I ATCGAT 1 cut(s) 479
BsuI GTATCC 1 cut(s) 653
BsuRI GGCC 5 cut(s) 131, 141, 458, 881, 887
BsuTUI ATCGAT 1 cut(s) 479
BtgI CCRYGG 2 cut(s) 26, 450
BtsCI GGATG 1 cut(s) 1045
BtsI GCAGTG 3 cut(s) 177, 1016, 1059
BtsIMutI CAGTG 4 cut(s) 84, 177, 1016, 1059
Cac8I GCNNGC 2 cut(s) 692, 956
CfoI GCGC 1 cut(s) 507
Cfr10I RCCGGY 1 cut(s) 821
Cfr13I GGNCC 1 cut(s) 382
ClaI ATCGAT 1 cut(s) 479
CseI GACGC 2 cut(s) 452, 519
Csp6I GTAC 2 cut(s) 769, 1024
CspAI ACCGGT 1 cut(s) 821
CviAII CATG 4 cut(s) 158, 331, 403, 460
CviQI GTAC 2 cut(s) 769, 1024
DdeI CTNAG 2 cut(s) 522, 1034
DpnI GATC 5 cut(s) 14, 221, 243, 281, 791
DpnII GATC 5 cut(s) 12, 219, 241, 279, 789
DrdI GACNNNNNNGTC 1 cut(s) 826
DseDI GACNNNNNNGTC 1 cut(s) 826
EaeI YGGCCR 2 cut(s) 129, 456
Eam1104I CTCTTC 1 cut(s) 855
EarI CTCTTC 1 cut(s) 855
EciI GGCGGA 2 cut(s) 316, 379
Eco147I AGGCCT 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 800
Eco72I CACGTG 1 cut(s) 581
Eco88I CYCGRG 1 cut(s) 653
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 378, 392
Esp3I CGTCTC 2 cut(s) 22, 316
FaeI CATG 4 cut(s) 161, 334, 406, 463
FaiI YATR 6 cut(s) 159, 332, 404, 461, 827, 867
FaqI GGGAC 1 cut(s) 305
FatI CATG 4 cut(s) 157, 330, 402, 459
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 1 cut(s) 566
FokI GGATG 1 cut(s) 1052
Fsp4HI GCNGC 1 cut(s) 566
FspBI CTAG 1 cut(s) 554
GlaI GCGC 1 cut(s) 506
GluI GCNGC 1 cut(s) 566
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 5 cut(s) 131, 141, 458, 881, 887
HapII CCGG 2 cut(s) 801, 822
HgaI GACGC 2 cut(s) 452, 519
HhaI GCGC 1 cut(s) 507
Hin1I GRCGYC 2 cut(s) 444, 511
Hin1II CATG 4 cut(s) 161, 334, 406, 463
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 7 cut(s) 69, 349, 550, 647, 745, 797, 811
HpaII CCGG 2 cut(s) 801, 822
HphI GGTGA 1 cut(s) 931
Hpy166II GTNNAC 4 cut(s) 256, 298, 427, 1057
Hpy188I TCNGA 2 cut(s) 434, 819
Hpy188III TCNNGA 2 cut(s) 10, 554
Hpy8I GTNNAC 4 cut(s) 256, 298, 427, 1057
Hpy99I CGWCG 6 cut(s) 263, 320, 446, 513, 686, 797
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 2 cut(s) 580, 684
HpyCH4V TGCA 5 cut(s) 189, 910, 954, 1052, 1057
HpyF10VI GCNNNNNNNGC 4 cut(s) 527, 600, 714, 964
HpyF3I CTNAG 2 cut(s) 522, 1034
HpySE526I ACGT 2 cut(s) 580, 684
Hsp92I GRCGYC 2 cut(s) 444, 511
Hsp92II CATG 4 cut(s) 161, 334, 406, 463
HspAI GCGC 1 cut(s) 505
Kzo9I GATC 5 cut(s) 12, 219, 241, 279, 789
Lsp1109I GCAGC 1 cut(s) 552
LweI GCATC 1 cut(s) 897
MaeI CTAG 1 cut(s) 554
MaeII ACGT 2 cut(s) 580, 684
MaeIII GTNAC 1 cut(s) 36
MalI GATC 5 cut(s) 14, 221, 243, 281, 791
MboI GATC 5 cut(s) 12, 219, 241, 279, 789
MboII GAAGA 9 cut(s) 109, 209, 478, 559, 569, 625, 667, 806, 872
MflI RGATCY 2 cut(s) 219, 241
MhlI GDGCHC 3 cut(s) 969, 992, 1059
MlsI TGGCCA 2 cut(s) 131, 458
MluCI AATT 2 cut(s) 757, 982
MluNI TGGCCA 2 cut(s) 131, 458
MlyI GAGTC 4 cut(s) 343, 641, 739, 806
MmeI TCCRAC 1 cut(s) 819
Mox20I TGGCCA 2 cut(s) 131, 458
MroXI GAANNNNTTC 1 cut(s) 204
MscI TGGCCA 2 cut(s) 131, 458
MseI TTAA 1 cut(s) 1072
MslI CAYNNNNRTG 2 cut(s) 251, 452
Msp20I TGGCCA 2 cut(s) 131, 458
MspA1I CMGCKG 1 cut(s) 723
MspI CCGG 2 cut(s) 801, 822
MspR9I CCNGG 2 cut(s) 380, 394
Mva1269I GAATGC 1 cut(s) 956
MvaI CCWGG 2 cut(s) 380, 394
MvnI CGCG 2 cut(s) 123, 505
MwoI GCNNNNNNNGC 4 cut(s) 527, 600, 714, 964
NdeII GATC 5 cut(s) 12, 219, 241, 279, 789
NlaIII CATG 4 cut(s) 161, 334, 406, 463
NlaIV GGNNCC 1 cut(s) 718
NmeAIII GCCGAG 1 cut(s) 907
NmuCI GTSAC 1 cut(s) 36
NspI RCATGY 1 cut(s) 406
OliI CACNNNNGTG 1 cut(s) 452
PaeR7I CTCGAG 1 cut(s) 653
PceI AGGCCT 1 cut(s) 141
PcsI WCGNNNNNNNCGW 2 cut(s) 315, 447
PctI GAATGC 1 cut(s) 956
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 69, 550, 811
PfoI TCCNGGA 1 cut(s) 378
PinAI ACCGGT 1 cut(s) 821
PkrI GCNGC 1 cut(s) 567
PleI GAGTC 4 cut(s) 343, 641, 739, 805
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 4 cut(s) 343, 641, 739, 805
Ppu21I YACGTR 1 cut(s) 581
PpuMI RGGWCCY 1 cut(s) 382
Psp5II RGGWCCY 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 378, 392
PspCI CACGTG 1 cut(s) 581
PspGI CCWGG 2 cut(s) 378, 392
PspN4I GGNNCC 1 cut(s) 718
PspPI GGNCC 1 cut(s) 382
PspPPI RGGWCCY 1 cut(s) 382
PspXI VCTCGAGB 1 cut(s) 653
PsuI RGATCY 2 cut(s) 219, 241
PvuII CAGCTG 1 cut(s) 723
RsaI GTAC 2 cut(s) 770, 1025
RsaNI GTAC 2 cut(s) 769, 1024
RseI CAYNNNNRTG 2 cut(s) 251, 452
SaqAI TTAA 1 cut(s) 1072
SatI GCNGC 1 cut(s) 566
Sau3AI GATC 5 cut(s) 12, 219, 241, 279, 789
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 4 cut(s) 343, 641, 739, 806
ScrFI CCNGG 2 cut(s) 380, 394
SduI GDGCHC 3 cut(s) 969, 992, 1059
SfaNI GCATC 1 cut(s) 897
Sfr274I CTCGAG 1 cut(s) 653
SinI GGWCC 1 cut(s) 382
SlaI CTCGAG 1 cut(s) 653
SmiMI CAYNNNNRTG 2 cut(s) 251, 452
SmlI CTYRAG 2 cut(s) 353, 653
SmoI CTYRAG 2 cut(s) 353, 653
Sse9I AATT 2 cut(s) 757, 982
SseBI AGGCCT 1 cut(s) 141
SsiI CCGC 5 cut(s) 60, 121, 327, 390, 708
SspMI CTAG 1 cut(s) 554
StuI AGGCCT 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 378, 392
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 2 cut(s) 583, 687
TasI AATT 2 cut(s) 757, 982
TatI WGTACW 1 cut(s) 768
TfiI GAWTC 3 cut(s) 69, 550, 811
Tru1I TTAA 1 cut(s) 1072
Tru9I TTAA 1 cut(s) 1072
TscAI CASTG 4 cut(s) 91, 177, 1016, 1059
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 1 cut(s) 565
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 9 cut(s) 210, 328, 347, 465, 576, 667, 890, 938, 1056
TspGWI ACGGA 5 cut(s) 10, 15, 241, 304, 1041
TspRI CASTG 4 cut(s) 91, 177, 1016, 1059
VneI GTGCAC 1 cut(s) 1055
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 1 cut(s) 757
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 406
XhoI CTCGAG 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 426
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.