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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G58120 |
| fragaria_vesca | FvH4_5g35560 |
| malus_domestica | MD08G1195700.v1.1 MD09G1227400.v1.1 MD09G1227500.v1.1 MD15G1383600.v1.1 |
| prunus_persica | Prupe.1G529700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0236941 |
| rosa_laevigata | RLG00000001046 |
| rosa_multiflora | Rmu_co8465559.1_g000001 Rmu_sc0007991.1_g000004 Rmu_sc0013124.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00224670 |
| rosa_rugosa | Rorug07G0301100 |
| rosa_samantha | Rh7AG456100 Rh7BG427400 Rh7CG475000 Rh7DG444000 |
| rosa_wichuraiana | Rw7G037860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 113, 976 |
| AccB1I | GGYRCC | 1 cut(s) | 866 |
| AccI | GTMKAC | 1 cut(s) | 576 |
| AccII | CGCG | 3 cut(s) | 230, 267, 655 |
| AciI | CCGC | 9 cut(s) | 204, 228, 230, 265, 314, 477, 513, 540, 858 |
| AclWI | GGATC | 4 cut(s) | 94, 107, 358, 393 |
| AcoI | YGGCCR | 2 cut(s) | 273, 606 |
| AcsI | RAATTY | 1 cut(s) | 907 |
| AcuI | CTGAAG | 1 cut(s) | 950 |
| AcvI | CACGTG | 1 cut(s) | 731 |
| AcyI | GRCGYC | 2 cut(s) | 594, 661 |
| AfaI | GTAC | 3 cut(s) | 86, 920, 1175 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 171, 271, 820, 957, 1216 |
| AgeI | ACCGGT | 1 cut(s) | 971 |
| AgsI | TTSAA | 5 cut(s) | 178, 353, 636, 697, 763 |
| AjnI | CCWGG | 4 cut(s) | 18, 42, 528, 542 |
| AleI | CACNNNNGTG | 1 cut(s) | 602 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 607, 639 |
| AluBI | AGCT | 5 cut(s) | 247, 357, 873, 1090, 1183 |
| AluI | AGCT | 5 cut(s) | 247, 357, 873, 1090, 1183 |
| Alw21I | GWGCWC | 2 cut(s) | 1142, 1209 |
| Alw26I | GTCTC | 4 cut(s) | 166, 466, 789, 923 |
| Alw44I | GTGCAC | 1 cut(s) | 1205 |
| AlwI | GGATC | 4 cut(s) | 94, 107, 358, 393 |
| Ama87I | CYCGRG | 2 cut(s) | 111, 803 |
| AoxI | GGCC | 5 cut(s) | 273, 283, 606, 1029, 1035 |
| ApaLI | GTGCAC | 1 cut(s) | 1205 |
| ApeKI | GCWGC | 1 cut(s) | 715 |
| ApoI | RAATTY | 1 cut(s) | 907 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 434, 466 |
| AsiGI | ACCGGT | 1 cut(s) | 971 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 348 |
| AspLEI | GCGC | 2 cut(s) | 526, 657 |
| AspS9I | GGNCC | 3 cut(s) | 16, 232, 532 |
| AsuHPI | GGTGA | 1 cut(s) | 1081 |
| AvaI | CYCGRG | 2 cut(s) | 111, 803 |
| AvaII | GGWCC | 3 cut(s) | 16, 232, 532 |
| BaeGI | GKGCMC | 2 cut(s) | 1119, 1209 |
| BalI | TGGCCA | 2 cut(s) | 275, 608 |
| BamHI | GGATCC | 1 cut(s) | 99 |
| BanI | GGYRCC | 1 cut(s) | 866 |
| BbrPI | CACGTG | 1 cut(s) | 731 |
| BbsI | GAAGAC | 2 cut(s) | 448, 817 |
| Bbv12I | GWGCWC | 2 cut(s) | 1142, 1209 |
| BbvCI | CCTCAGC | 1 cut(s) | 672 |
| BbvI | GCAGC | 1 cut(s) | 702 |
| BccI | CCATC | 4 cut(s) | 68, 149, 565, 784 |
| BciT130I | CCWGG | 4 cut(s) | 20, 44, 530, 544 |
| BciVI | GTATCC | 1 cut(s) | 803 |
| BcoDI | GTCTC | 4 cut(s) | 166, 466, 789, 923 |
| BfuI | GTATCC | 1 cut(s) | 803 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1114 |
| BisI | GCNGC | 2 cut(s) | 514, 716 |
| BlsI | GCNGC | 2 cut(s) | 515, 717 |
| BmcAI | AGTACT | 1 cut(s) | 86 |
| Bme1390I | CCNGG | 4 cut(s) | 20, 44, 530, 544 |
| Bme18I | GGWCC | 3 cut(s) | 16, 232, 532 |
| BmeT110I | CYCGRG | 2 cut(s) | 111, 803 |
| BmgT120I | GGNCC | 3 cut(s) | 16, 232, 532 |
| BmiI | GGNNCC | 3 cut(s) | 101, 234, 868 |
| BmrFI | CCNGG | 4 cut(s) | 20, 44, 530, 544 |
| BmsI | GCATC | 1 cut(s) | 1047 |
| BpiI | GAAGAC | 2 cut(s) | 448, 817 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 786, 818 |
| BpmI | CTGGAG | 1 cut(s) | 512 |
| Bpu10I | CCTNAGC | 2 cut(s) | 672, 1184 |
| BpuEI | CTTGAG | 1 cut(s) | 488 |
| Bsa29I | ATCGAT | 2 cut(s) | 629, 1083 |
| BsaAI | YACGTR | 1 cut(s) | 731 |
| BsaHI | GRCGYC | 2 cut(s) | 594, 661 |
| BsaJI | CCNNGG | 6 cut(s) | 19, 170, 228, 600, 1032, 1111 |
| BsaWI | WCCGGW | 1 cut(s) | 971 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 998, 1028 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 171, 271, 820, 957, 1216 |
| Bse118I | RCCGGY | 1 cut(s) | 971 |
| Bse1I | ACTGG | 1 cut(s) | 1160 |
| Bse3DI | GCAATG | 1 cut(s) | 340 |
| BseBI | CCWGG | 4 cut(s) | 20, 44, 530, 544 |
| BseCI | ATCGAT | 2 cut(s) | 629, 1083 |
| BseDI | CCNNGG | 6 cut(s) | 19, 170, 228, 600, 1032, 1111 |
| BseGI | GGATG | 1 cut(s) | 1195 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 171, 271, 820, 957, 1216 |
| BseMI | GCAATG | 1 cut(s) | 340 |
| BseMII | CTCAG | 2 cut(s) | 663, 1198 |
| BseNI | ACTGG | 1 cut(s) | 1160 |
| BseRI | GAGGAG | 1 cut(s) | 689 |
| BseSI | GKGCMC | 2 cut(s) | 1119, 1209 |
| BseXI | GCAGC | 1 cut(s) | 702 |
| Bsh1236I | CGCG | 3 cut(s) | 230, 267, 655 |
| BshFI | GGCC | 5 cut(s) | 275, 285, 608, 1031, 1037 |
| BshNI | GGYRCC | 1 cut(s) | 866 |
| BshTI | ACCGGT | 1 cut(s) | 971 |
| BshVI | ATCGAT | 2 cut(s) | 629, 1083 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1142, 1209 |
| BsiHKCI | CYCGRG | 2 cut(s) | 111, 803 |
| BsiSI | CCGG | 2 cut(s) | 951, 972 |
| BslFI | GGGAC | 1 cut(s) | 455 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 171, 271, 820, 957, 1216 |
| BsmAI | GTCTC | 4 cut(s) | 166, 466, 789, 923 |
| BsmBI | CGTCTC | 2 cut(s) | 166, 466 |
| BsmFI | GGGAC | 1 cut(s) | 455 |
| BsmI | GAATGC | 1 cut(s) | 1106 |
| BsnI | GGCC | 5 cut(s) | 275, 285, 608, 1031, 1037 |
| BsoBI | CYCGRG | 2 cut(s) | 111, 803 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1119, 1142, 1209 |
| Bsp1407I | TGTACA | 1 cut(s) | 918 |
| Bsp143I | GATC | 7 cut(s) | 99, 156, 363, 385, 423, 939, 1080 |
| BspACI | CCGC | 9 cut(s) | 204, 228, 230, 265, 314, 477, 513, 540, 858 |
| BspANI | GGCC | 5 cut(s) | 275, 285, 608, 1031, 1037 |
| BspCNI | CTCAG | 2 cut(s) | 664, 1197 |
| BspDI | ATCGAT | 2 cut(s) | 629, 1083 |
| BspFNI | CGCG | 3 cut(s) | 230, 267, 655 |
| BspLI | GGNNCC | 3 cut(s) | 101, 234, 868 |
| BspPI | GGATC | 4 cut(s) | 94, 107, 358, 393 |
| BspT107I | GGYRCC | 1 cut(s) | 866 |
| BsrDI | GCAATG | 1 cut(s) | 340 |
| BsrFI | RCCGGY | 1 cut(s) | 971 |
| BsrGI | TGTACA | 1 cut(s) | 918 |
| BsrI | ACTGG | 1 cut(s) | 1160 |
| BssAI | RCCGGY | 1 cut(s) | 971 |
| BssECI | CCNNGG | 6 cut(s) | 19, 170, 228, 600, 1032, 1111 |
| BssMI | GATC | 7 cut(s) | 99, 156, 363, 385, 423, 939, 1080 |
| BssNI | GRCGYC | 2 cut(s) | 594, 661 |
| BssT1I | CCWWGG | 1 cut(s) | 1111 |
| Bst2UI | CCWGG | 4 cut(s) | 20, 44, 530, 544 |
| Bst4CI | ACNGT | 1 cut(s) | 601 |
| Bst6I | CTCTTC | 1 cut(s) | 1005 |
| BstACI | GRCGYC | 2 cut(s) | 594, 661 |
| BstAUI | TGTACA | 1 cut(s) | 918 |
| BstBAI | YACGTR | 1 cut(s) | 731 |
| BstC8I | GCNNGC | 2 cut(s) | 842, 1106 |
| BstDEI | CTNAG | 3 cut(s) | 88, 672, 1184 |
| BstDSI | CCRYGG | 3 cut(s) | 170, 228, 600 |
| BstF5I | GGATG | 1 cut(s) | 1195 |
| BstFNI | CGCG | 3 cut(s) | 230, 267, 655 |
| BstHHI | GCGC | 2 cut(s) | 526, 657 |
| BstKTI | GATC | 7 cut(s) | 102, 159, 366, 388, 426, 942, 1083 |
| BstMAI | GTCTC | 4 cut(s) | 166, 466, 789, 923 |
| BstMBI | GATC | 7 cut(s) | 99, 156, 363, 385, 423, 939, 1080 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 53, 677, 750, 864, 1114 |
| BstNI | CCWGG | 4 cut(s) | 20, 44, 530, 544 |
| BstNSI | RCATGY | 1 cut(s) | 556 |
| BstSCI | CCNGG | 4 cut(s) | 18, 42, 528, 542 |
| BstSLI | GKGCMC | 2 cut(s) | 1119, 1209 |
| BstUI | CGCG | 3 cut(s) | 230, 267, 655 |
| BstV1I | GCAGC | 1 cut(s) | 702 |
| BstV2I | GAAGAC | 2 cut(s) | 448, 817 |
| BstX2I | RGATCY | 3 cut(s) | 99, 363, 385 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 604 |
| BstYI | RGATCY | 3 cut(s) | 99, 363, 385 |
| Bsu15I | ATCGAT | 2 cut(s) | 629, 1083 |
| BsuI | GTATCC | 1 cut(s) | 803 |
| BsuRI | GGCC | 5 cut(s) | 275, 285, 608, 1031, 1037 |
| BsuTUI | ATCGAT | 2 cut(s) | 629, 1083 |
| BtgI | CCRYGG | 3 cut(s) | 170, 228, 600 |
| BtsCI | GGATG | 1 cut(s) | 1195 |
| BtsI | GCAGTG | 3 cut(s) | 334, 1166, 1209 |
| BtsIMutI | CAGTG | 3 cut(s) | 334, 1166, 1209 |
| Cac8I | GCNNGC | 2 cut(s) | 842, 1106 |
| CfoI | GCGC | 2 cut(s) | 526, 657 |
| Cfr10I | RCCGGY | 1 cut(s) | 971 |
| Cfr13I | GGNCC | 3 cut(s) | 16, 232, 532 |
| Cfr42I | CCGCGG | 1 cut(s) | 231 |
| ClaI | ATCGAT | 2 cut(s) | 629, 1083 |
| CseI | GACGC | 2 cut(s) | 602, 669 |
| Csp6I | GTAC | 3 cut(s) | 85, 919, 1174 |
| CspAI | ACCGGT | 1 cut(s) | 971 |
| CviAII | CATG | 5 cut(s) | 145, 302, 481, 553, 610 |
| CviQI | GTAC | 3 cut(s) | 85, 919, 1174 |
| DdeI | CTNAG | 3 cut(s) | 88, 672, 1184 |
| DpnI | GATC | 7 cut(s) | 101, 158, 365, 387, 425, 941, 1082 |
| DpnII | GATC | 7 cut(s) | 99, 156, 363, 385, 423, 939, 1080 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 113, 976 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 113, 976 |
| EaeI | YGGCCR | 2 cut(s) | 273, 606 |
| Eam1104I | CTCTTC | 1 cut(s) | 1005 |
| EarI | CTCTTC | 1 cut(s) | 1005 |
| EciI | GGCGGA | 2 cut(s) | 466, 529 |
| Eco130I | CCWWGG | 1 cut(s) | 1111 |
| Eco147I | AGGCCT | 1 cut(s) | 285 |
| Eco47I | GGWCC | 3 cut(s) | 16, 232, 532 |
| Eco57I | CTGAAG | 1 cut(s) | 950 |
| Eco72I | CACGTG | 1 cut(s) | 731 |
| Eco88I | CYCGRG | 2 cut(s) | 111, 803 |
| EcoO109I | RGGNCCY | 1 cut(s) | 532 |
| EcoRII | CCWGG | 4 cut(s) | 18, 42, 528, 542 |
| EcoT14I | CCWWGG | 1 cut(s) | 1111 |
| ErhI | CCWWGG | 1 cut(s) | 1111 |
| Esp3I | CGTCTC | 2 cut(s) | 166, 466 |
| FaeI | CATG | 5 cut(s) | 148, 305, 484, 556, 613 |
| FaiI | YATR | 8 cut(s) | 146, 290, 303, 482, 554, 611, 977, 1017 |
| FaqI | GGGAC | 1 cut(s) | 455 |
| FatI | CATG | 5 cut(s) | 144, 301, 480, 552, 609 |
| FauI | CCCGC | 1 cut(s) | 235 |
| FblI | GTMKAC | 1 cut(s) | 576 |
| Fnu4HI | GCNGC | 2 cut(s) | 514, 716 |
| FokI | GGATG | 1 cut(s) | 1202 |
| Fsp4HI | GCNGC | 2 cut(s) | 514, 716 |
| GlaI | GCGC | 2 cut(s) | 525, 656 |
| GluI | GCNGC | 2 cut(s) | 514, 716 |
| GsuI | CTGGAG | 1 cut(s) | 512 |
| HaeIII | GGCC | 5 cut(s) | 275, 285, 608, 1031, 1037 |
| HapII | CCGG | 2 cut(s) | 951, 972 |
| HgaI | GACGC | 2 cut(s) | 602, 669 |
| HhaI | GCGC | 2 cut(s) | 526, 657 |
| Hin1I | GRCGYC | 2 cut(s) | 594, 661 |
| Hin1II | CATG | 5 cut(s) | 148, 305, 484, 556, 613 |
| Hin6I | GCGC | 2 cut(s) | 524, 655 |
| HinP1I | GCGC | 2 cut(s) | 524, 655 |
| HincII | GTYRAC | 1 cut(s) | 442 |
| HindII | GTYRAC | 1 cut(s) | 442 |
| HinfI | GANTC | 9 cut(s) | 66, 107, 114, 213, 499, 700, 797, 895, 947 |
| HpaII | CCGG | 2 cut(s) | 951, 972 |
| HphI | GGTGA | 1 cut(s) | 1081 |
| Hpy166II | GTNNAC | 4 cut(s) | 400, 442, 577, 1207 |
| Hpy188I | TCNGA | 4 cut(s) | 29, 65, 584, 969 |
| Hpy188III | TCNNGA | 3 cut(s) | 111, 154, 704 |
| Hpy8I | GTNNAC | 4 cut(s) | 400, 442, 577, 1207 |
| Hpy99I | CGWCG | 6 cut(s) | 407, 470, 596, 663, 836, 947 |
| HpyAV | CCTTC | 9 cut(s) | 275, 304, 460, 483, 567, 679, 848, 1021, 1187 |
| HpyCH4III | ACNGT | 1 cut(s) | 601 |
| HpyCH4IV | ACGT | 2 cut(s) | 730, 834 |
| HpyCH4V | TGCA | 4 cut(s) | 1060, 1104, 1202, 1207 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 53, 677, 750, 864, 1114 |
| HpyF3I | CTNAG | 3 cut(s) | 88, 672, 1184 |
| HpySE526I | ACGT | 2 cut(s) | 730, 834 |
| Hsp92I | GRCGYC | 2 cut(s) | 594, 661 |
| Hsp92II | CATG | 5 cut(s) | 148, 305, 484, 556, 613 |
| HspAI | GCGC | 2 cut(s) | 524, 655 |
| KspI | CCGCGG | 1 cut(s) | 231 |
| Kzo9I | GATC | 7 cut(s) | 99, 156, 363, 385, 423, 939, 1080 |
| LmnI | GCTCC | 1 cut(s) | 531 |
| Lsp1109I | GCAGC | 1 cut(s) | 702 |
| LweI | GCATC | 1 cut(s) | 1047 |
| MaeII | ACGT | 2 cut(s) | 730, 834 |
| MaeIII | GTNAC | 1 cut(s) | 180 |
| MalI | GATC | 7 cut(s) | 101, 158, 365, 387, 425, 941, 1082 |
| MboI | GATC | 7 cut(s) | 99, 156, 363, 385, 423, 939, 1080 |
| MflI | RGATCY | 3 cut(s) | 99, 363, 385 |
| MhlI | GDGCHC | 3 cut(s) | 1119, 1142, 1209 |
| MlsI | TGGCCA | 2 cut(s) | 275, 608 |
| MluCI | AATT | 3 cut(s) | 10, 907, 1132 |
| MluNI | TGGCCA | 2 cut(s) | 275, 608 |
| MlyI | GAGTC | 6 cut(s) | 101, 123, 493, 791, 889, 956 |
| MmeI | TCCRAC | 1 cut(s) | 969 |
| Mox20I | TGGCCA | 2 cut(s) | 275, 608 |
| MroXI | GAANNNNTTC | 1 cut(s) | 348 |
| MscI | TGGCCA | 2 cut(s) | 275, 608 |
| MseI | TTAA | 2 cut(s) | 1002, 1222 |
| MslI | CAYNNNNRTG | 2 cut(s) | 395, 602 |
| Msp20I | TGGCCA | 2 cut(s) | 275, 608 |
| MspA1I | CMGCKG | 2 cut(s) | 230, 873 |
| MspI | CCGG | 2 cut(s) | 951, 972 |
| MspR9I | CCNGG | 4 cut(s) | 20, 44, 530, 544 |
| Mva1269I | GAATGC | 1 cut(s) | 1106 |
| MvaI | CCWGG | 4 cut(s) | 20, 44, 530, 544 |
| MvnI | CGCG | 3 cut(s) | 230, 267, 655 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 53, 677, 750, 864, 1114 |
| NdeII | GATC | 7 cut(s) | 99, 156, 363, 385, 423, 939, 1080 |
| NlaIII | CATG | 5 cut(s) | 148, 305, 484, 556, 613 |
| NlaIV | GGNNCC | 3 cut(s) | 101, 234, 868 |
| NmeAIII | GCCGAG | 1 cut(s) | 1057 |
| NmuCI | GTSAC | 1 cut(s) | 180 |
| NspI | RCATGY | 1 cut(s) | 556 |
| OliI | CACNNNNGTG | 1 cut(s) | 602 |
| PaeR7I | CTCGAG | 1 cut(s) | 803 |
| PceI | AGGCCT | 1 cut(s) | 285 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 465, 597, 746 |
| PctI | GAATGC | 1 cut(s) | 1106 |
| PdmI | GAANNNNTTC | 1 cut(s) | 348 |
| PfeI | GAWTC | 3 cut(s) | 66, 213, 700 |
| PfoI | TCCNGGA | 1 cut(s) | 528 |
| PinAI | ACCGGT | 1 cut(s) | 971 |
| PkrI | GCNGC | 2 cut(s) | 515, 717 |
| PleI | GAGTC | 6 cut(s) | 101, 122, 493, 791, 889, 955 |
| PmaCI | CACGTG | 1 cut(s) | 731 |
| PmlI | CACGTG | 1 cut(s) | 731 |
| PpsI | GAGTC | 6 cut(s) | 101, 122, 493, 791, 889, 955 |
| Ppu21I | YACGTR | 1 cut(s) | 731 |
| PpuMI | RGGWCCY | 1 cut(s) | 532 |
| Psp5II | RGGWCCY | 1 cut(s) | 532 |
| Psp6I | CCWGG | 4 cut(s) | 18, 42, 528, 542 |
| PspCI | CACGTG | 1 cut(s) | 731 |
| PspGI | CCWGG | 4 cut(s) | 18, 42, 528, 542 |
| PspN4I | GGNNCC | 3 cut(s) | 101, 234, 868 |
| PspPI | GGNCC | 3 cut(s) | 16, 232, 532 |
| PspPPI | RGGWCCY | 1 cut(s) | 532 |
| PspXI | VCTCGAGB | 1 cut(s) | 803 |
| PsuI | RGATCY | 3 cut(s) | 99, 363, 385 |
| PvuII | CAGCTG | 1 cut(s) | 873 |
| RsaI | GTAC | 3 cut(s) | 86, 920, 1175 |
| RsaNI | GTAC | 3 cut(s) | 85, 919, 1174 |
| RseI | CAYNNNNRTG | 2 cut(s) | 395, 602 |
| SacII | CCGCGG | 1 cut(s) | 231 |
| SaqAI | TTAA | 2 cut(s) | 1002, 1222 |
| SatI | GCNGC | 2 cut(s) | 514, 716 |
| Sau3AI | GATC | 7 cut(s) | 99, 156, 363, 385, 423, 939, 1080 |
| Sau96I | GGNCC | 3 cut(s) | 16, 232, 532 |
| ScaI | AGTACT | 1 cut(s) | 86 |
| SchI | GAGTC | 6 cut(s) | 101, 123, 493, 791, 889, 956 |
| ScrFI | CCNGG | 4 cut(s) | 20, 44, 530, 544 |
| SduI | GDGCHC | 3 cut(s) | 1119, 1142, 1209 |
| SfaNI | GCATC | 1 cut(s) | 1047 |
| Sfr274I | CTCGAG | 1 cut(s) | 803 |
| Sfr303I | CCGCGG | 1 cut(s) | 231 |
| SgrBI | CCGCGG | 1 cut(s) | 231 |
| SinI | GGWCC | 3 cut(s) | 16, 232, 532 |
| SlaI | CTCGAG | 1 cut(s) | 803 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 395, 602 |
| SmlI | CTYRAG | 2 cut(s) | 503, 803 |
| SmoI | CTYRAG | 2 cut(s) | 503, 803 |
| Sse9I | AATT | 3 cut(s) | 10, 907, 1132 |
| SseBI | AGGCCT | 1 cut(s) | 285 |
| SsiI | CCGC | 9 cut(s) | 204, 228, 230, 265, 314, 477, 513, 540, 858 |
| StuI | AGGCCT | 1 cut(s) | 285 |
| StyD4I | CCNGG | 4 cut(s) | 18, 42, 528, 542 |
| StyI | CCWWGG | 1 cut(s) | 1111 |
| TaaI | ACNGT | 1 cut(s) | 601 |
| TaiI | ACGT | 2 cut(s) | 733, 837 |
| TasI | AATT | 3 cut(s) | 10, 907, 1132 |
| TatI | WGTACW | 2 cut(s) | 84, 918 |
| TauI | GCSGC | 1 cut(s) | 516 |
| TfiI | GAWTC | 3 cut(s) | 66, 213, 700 |
| Tru1I | TTAA | 2 cut(s) | 1002, 1222 |
| Tru9I | TTAA | 2 cut(s) | 1002, 1222 |
| TscAI | CASTG | 3 cut(s) | 334, 1166, 1209 |
| TseFI | GTSAC | 1 cut(s) | 180 |
| TseI | GCWGC | 1 cut(s) | 715 |
| Tsp45I | GTSAC | 1 cut(s) | 180 |
| TspDTI | ATGAA | 9 cut(s) | 354, 478, 497, 615, 726, 817, 1040, 1088, 1206 |
| TspGWI | ACGGA | 5 cut(s) | 154, 159, 385, 454, 1191 |
| TspRI | CASTG | 3 cut(s) | 334, 1166, 1209 |
| VneI | GTGCAC | 1 cut(s) | 1205 |
| VpaK11BI | GGWCC | 3 cut(s) | 16, 232, 532 |
| XapI | RAATTY | 1 cut(s) | 907 |
| XceI | RCATGY | 1 cut(s) | 556 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 40, 1118 |
| XhoI | CTCGAG | 1 cut(s) | 803 |
| XmiI | GTMKAC | 1 cut(s) | 576 |
| XmnI | GAANNNNTTC | 1 cut(s) | 348 |
| ZrmI | AGTACT | 1 cut(s) | 86 |