Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011711

Physical Location & Seq

Genomic Coordinates Reverse (-)

28093199 .. 28093690

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1227500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCGATCAATTTGATCCAAGGTTTCCATACCAAACACCAACCGAAGCACGCTGCTCCAATCGAATTGTATTCAGATGCCAAAGTACTTGGTTATTCGAATTCCAGAGCCTTGATCCTCGTCGCTCGTTGTTTGATCTTGGCTTTGTGCATCGTTTCACTCCCATGGTTGTGCTCACTCATCCCCACTGCAACCACTTCTCTGCATGACATAATTAGCTCATCTGACGTGGTTAATCTGGAGCTCAAGCCTTTGATCTTCAGGGACTTGGCTAACGAAGGCCTATACAAGAGAGGCACACATAAAGCTGTTTTTGTAAGCAGTAGGGACGAAGAAGCTACCAAAGCATCTCAGATCCTCGATAACGAAGATATTAACGAAATTGAGCTTATCAAATCTGACAAACAAAGATCAATCCCTGAAAACTCAATTGACTTTGCATTCGTCTCTGCCTTCACTGCCGCCTCAAAGTTCATCGAAATGACTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.06

Weight (kDa)

5.93

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58120
fragaria_vesca	FvH4_5g35560
malus_domestica	MD08G1195700.v1.1 MD09G1227400.v1.1 MD09G1227500.v1.1 MD15G1383600.v1.1
prunus_persica	Prupe.1G529700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0236941
rosa_laevigata	RLG00000001046
rosa_multiflora	Rmu_co8465559.1_g000001 Rmu_sc0007991.1_g000004 Rmu_sc0013124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224670
rosa_rugosa	Rorug07G0301100
rosa_samantha	Rh7AG456100 Rh7BG427400 Rh7CG475000 Rh7DG444000
rosa_wichuraiana	Rw7G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	3 cut(s)	10, 109, 349
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	244
AfaI	GTAC	1 cut(s)	87
AjiI	CACGTC	1 cut(s)	229
AluBI	AGCT	5 cut(s)	219, 244, 308, 338, 388
AluI	AGCT	5 cut(s)	219, 244, 308, 338, 388
Alw21I	GWGCWC	2 cut(s)	176, 246
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	3 cut(s)	10, 109, 349
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	100
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AsuII	TTCGAA	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	176, 246
BbvI	GCAGC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	451
BisI	GCNGC	2 cut(s)	54, 462
BlsI	GCNGC	2 cut(s)	55, 463
BmcAI	AGTACT	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	229
BmsI	GCATC	3 cut(s)	67, 159, 356
BpmI	CTGGAG	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	19, 164
BseDI	CCNNGG	2 cut(s)	19, 164
BseGI	GGATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	282
BsiHKAI	GWGCWC	2 cut(s)	176, 246
BslFI	GGGAC	2 cut(s)	278, 341
BsmAI	GTCTC	1 cut(s)	451
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	2 cut(s)	278, 341
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	176, 246
Bsp143I	GATC	7 cut(s)	6, 15, 114, 135, 255, 354, 410
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	364
BspPI	GGATC	3 cut(s)	10, 109, 349
BspT104I	TTCGAA	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	19, 164
BssMI	GATC	7 cut(s)	6, 15, 114, 135, 255, 354, 410
BssT1I	CCWWGG	2 cut(s)	19, 164
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	7 cut(s)	9, 18, 117, 138, 258, 357, 413
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	7 cut(s)	6, 15, 114, 135, 255, 354, 410
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 458
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	2 cut(s)	186, 456
BtsIMutI	CAGTG	2 cut(s)	186, 456
Cac8I	GCNNGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	2 cut(s)	165, 206
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	7 cut(s)	8, 17, 116, 137, 257, 356, 412
DpnII	GATC	7 cut(s)	6, 15, 114, 135, 255, 354, 410
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	2 cut(s)	19, 164
Eco147I	AGGCCT	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	19, 164
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	2 cut(s)	19, 164
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	2 cut(s)	168, 209
FaiI	YATR	6 cut(s)	30, 166, 207, 212, 286, 303
FaqI	GGGAC	2 cut(s)	278, 341
FatI	CATG	2 cut(s)	164, 205
Fnu4HI	GCNGC	2 cut(s)	54, 462
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	54, 462
GluI	GCNGC	2 cut(s)	54, 462
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	168, 209
HinfI	GANTC	1 cut(s)	484
Hpy188I	TCNGA	4 cut(s)	76, 226, 354, 400
Hpy188III	TCNNGA	2 cut(s)	105, 239
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	272, 463
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	150, 191, 205, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 458
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	168, 209
Kzo9I	GATC	7 cut(s)	6, 15, 114, 135, 255, 354, 410
LmnI	GCTCC	2 cut(s)	61, 241
LpnPI	CCDG	4 cut(s)	118, 224, 247, 432
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	3 cut(s)	67, 159, 356
MaeII	ACGT	1 cut(s)	228
MalI	GATC	7 cut(s)	8, 17, 116, 137, 257, 356, 412
MboI	GATC	7 cut(s)	6, 15, 114, 135, 255, 354, 410
MboII	GAAGA	3 cut(s)	250, 344, 380
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	1 cut(s)	354
MhlI	GDGCHC	2 cut(s)	176, 246
MluCI	AATT	6 cut(s)	10, 65, 100, 213, 381, 429
MlyI	GAGTC	1 cut(s)	478
MnlI	CCTC	4 cut(s)	128, 287, 368, 475
MseI	TTAA	3 cut(s)	234, 375, 490
MslI	CAYNNNNRTG	3 cut(s)	163, 169, 479
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	344, 458
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	7 cut(s)	6, 15, 114, 135, 255, 354, 410
NlaIII	CATG	2 cut(s)	168, 209
NspV	TTCGAA	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	282
PctI	GAATGC	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	55, 463
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp124BI	GAGCTC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	354
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	3 cut(s)	163, 169, 479
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	234, 375, 490
SatI	GCNGC	2 cut(s)	54, 462
Sau3AI	GATC	7 cut(s)	6, 15, 114, 135, 255, 354, 410
ScaI	AGTACT	1 cut(s)	87
SchI	GAGTC	1 cut(s)	478
SduI	GDGCHC	2 cut(s)	176, 246
SetI	ASST	7 cut(s)	25, 221, 231, 246, 310, 340, 390
SfaNI	GCATC	3 cut(s)	67, 159, 356
SfuI	TTCGAA	1 cut(s)	98
SmiMI	CAYNNNNRTG	3 cut(s)	163, 169, 479
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	6 cut(s)	10, 65, 100, 213, 381, 429
SseBI	AGGCCT	1 cut(s)	282
SsiI	CCGC	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	282
StyI	CCWWGG	2 cut(s)	19, 164
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	4 cut(s)	63, 98, 360, 477
TasI	AATT	6 cut(s)	10, 65, 100, 213, 381, 429
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	1 cut(s)	464
Tru1I	TTAA	3 cut(s)	234, 375, 490
Tru9I	TTAA	3 cut(s)	234, 375, 490
TscAI	CASTG	2 cut(s)	193, 463
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	463
TspRI	CASTG	2 cut(s)	193, 463
XapI	RAATTY	1 cut(s)	100
ZrmI	AGTACT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.