Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Forward (+)

22339809 .. 22342337

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAAAGATAGAGAAAACGATGGAAATCTTGAGAGCAGAATCTTCGTGGGAGGGTTATCGTGGGATGTCACAGAGAGACAGCTTGAGAGTACCTTTGACCGCTACGGGAAAATCACTGAGTGTCAGATTATGGTGGGGAGAGATACTGGGCGTCCACGTGGTTTTGGGTTTATTACATTCACTGATCGCAGAGGAGCTGATGATGCAATTAAGCACATGCATGGAAGGGAGTTGGGCAATAAGGTCATCTCCGTGAACAAAGCTGAGCCCAAAGTTGGTGGAGAAGATGTAGACCAATTAAAGAAAGGTGGAGGCTATTCATCTCGAGGGAAGGGAACCGAGGATGAGTGCTTTAAATGCAGACGCCCTGGTCATTGGGCTCGAGATTGCCCATCAACTGGTGACGATCGAGAACGGTTCAGAGTTCCCCTTGCGATGCGCTCTCGTATTGGAGACATAGATGGACACCGAGATCGCTATGGAGATCGTGATCTGGAGAGGGAGCGGGAGCGGGAGCGTGAGTTTGACCGCTACATGGATGGACGCCGTGACCGAGATGGGGGACGATATAGCTACAGGGACCGCTTCGACAGTGGAGACAAGTATGAGCCTCGTGATCACTATCCATTTGAGAGATACGCACCACCAGGAGACCGTTTTGTGAGTGATAGGTATGGGATGCCTGAACATCATCTTGAGAATGAATATCGCGGGAGAGAGAGAAGCTATGACAGGGACAGATACGCAAGGGATACAAGTGACAGATATGGAGATATGGGACCGATACGCGATGAGGGAAGACCCTACAGAAGCAGACCAGGTCCTTATGACCGTCCTAGCCGTCCTGGAGGCAGACCTTCATCATATGAACGTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

292

Amino Acids

34.4

Weight (kDa)

8.56

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	6 - 46	7.6e-10	RNA recognition motif
zf-CCHC	PF00098	79 - 95	2e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccBSI	CCGCTC	2 cut(s)	505, 511
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	2 cut(s)	711, 789
AciI	CCGC	6 cut(s)	100, 505, 511, 529, 583, 711
AclI	AACGTT	1 cut(s)	871
AcvI	CACGTG	1 cut(s)	158
AcyI	GRCGYC	3 cut(s)	151, 364, 544
AdeI	CACNNNGTG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	4 cut(s)	275, 398, 535, 559
AjnI	CCWGG	4 cut(s)	367, 646, 817, 844
AluBI	AGCT	5 cut(s)	82, 197, 263, 573, 726
AluI	AGCT	5 cut(s)	82, 197, 263, 573, 726
Alw26I	GTCTC	4 cut(s)	70, 447, 591, 645
Ama87I	CYCGRG	2 cut(s)	324, 381
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	580, 779, 821
AsuHPI	GGTGA	1 cut(s)	413
AvaI	CYCGRG	2 cut(s)	324, 381
AvaII	GGWCC	3 cut(s)	580, 779, 821
BanII	GRGCYC	2 cut(s)	270, 382
BauI	CACGAG	1 cut(s)	612
BbrPI	CACGTG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	805
BccI	CCATC	5 cut(s)	14, 400, 455, 533, 551
BceAI	ACGGC	2 cut(s)	531, 825
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	4 cut(s)	369, 648, 819, 846
BciVI	GTATCC	1 cut(s)	745
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	4 cut(s)	70, 447, 591, 645
BfaI	CTAG	1 cut(s)	837
BfmI	CTRYAG	2 cut(s)	574, 805
BfuI	GTATCC	1 cut(s)	745
BlpI	GCTNAGC	1 cut(s)	264
Bme1390I	CCNGG	4 cut(s)	369, 648, 819, 846
Bme18I	GGWCC	3 cut(s)	580, 779, 821
BmeT110I	CYCGRG	2 cut(s)	324, 381
BmgT120I	GGNCC	3 cut(s)	580, 779, 821
BmiI	GGNNCC	3 cut(s)	337, 581, 780
BmrFI	CCNGG	4 cut(s)	369, 648, 819, 846
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	3 cut(s)	193, 426, 669
BmuI	ACTGGG	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	805
BpmI	CTGGAG	2 cut(s)	515, 867
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	3 cut(s)	50, 104, 716
BsaAI	YACGTR	1 cut(s)	158
BsaBI	GATNNNNATC	3 cut(s)	24, 489, 621
BsaHI	GRCGYC	3 cut(s)	151, 364, 544
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	2 cut(s)	339, 367
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 506, 536
Bsc4I	CCNNNNNNNGG	4 cut(s)	275, 398, 535, 559
Bse1I	ACTGG	2 cut(s)	151, 403
Bse8I	GATNNNNATC	3 cut(s)	24, 489, 621
BseBI	CCWGG	4 cut(s)	369, 648, 819, 846
BseDI	CCNNGG	2 cut(s)	339, 367
BseGI	GGATG	4 cut(s)	70, 349, 544, 684
BseJI	GATNNNNATC	3 cut(s)	24, 489, 621
BseLI	CCNNNNNNNGG	4 cut(s)	275, 398, 535, 559
BseMII	CTCAG	2 cut(s)	108, 255
BseNI	ACTGG	2 cut(s)	151, 403
BseRI	GAGGAG	1 cut(s)	207
Bsh1236I	CGCG	2 cut(s)	711, 789
Bsh1285I	CGRYCG	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	409
BsiHKCI	CYCGRG	2 cut(s)	324, 381
BslFI	GGGAC	4 cut(s)	576, 593, 749, 792
BslI	CCNNNNNNNGG	4 cut(s)	275, 398, 535, 559
BsmAI	GTCTC	4 cut(s)	70, 447, 591, 645
BsmFI	GGGAC	4 cut(s)	576, 593, 749, 792
Bso31I	GGTCTC	1 cut(s)	645
BsoBI	CYCGRG	2 cut(s)	324, 381
Bsp1286I	GDGCHC	2 cut(s)	270, 382
Bsp143I	GATC	6 cut(s)	184, 406, 472, 484, 490, 616
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	6 cut(s)	100, 505, 511, 529, 583, 711
BspCNI	CTCAG	2 cut(s)	109, 256
BspFNI	CGCG	2 cut(s)	711, 789
BspLI	GGNNCC	3 cut(s)	337, 581, 780
BspTNI	GGTCTC	1 cut(s)	645
BsrBI	CCGCTC	2 cut(s)	505, 511
BsrI	ACTGG	2 cut(s)	151, 403
BssECI	CCNNGG	2 cut(s)	339, 367
BssMI	GATC	6 cut(s)	184, 406, 472, 484, 490, 616
BssNI	GRCGYC	3 cut(s)	151, 364, 544
BssSI	CACGAG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	4 cut(s)	369, 648, 819, 846
Bst4CI	ACNGT	4 cut(s)	417, 593, 656, 833
BstACI	GRCGYC	3 cut(s)	151, 364, 544
BstBAI	YACGTR	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	117, 264
BstF5I	GGATG	4 cut(s)	70, 349, 544, 684
BstFNI	CGCG	2 cut(s)	711, 789
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	6 cut(s)	187, 409, 475, 487, 493, 619
BstMAI	GTCTC	4 cut(s)	70, 447, 591, 645
BstMBI	GATC	6 cut(s)	184, 406, 472, 484, 490, 616
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 357
BstNI	CCWGG	4 cut(s)	369, 648, 819, 846
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	4 cut(s)	367, 646, 817, 844
BstSFI	CTRYAG	2 cut(s)	574, 805
BstUI	CGCG	2 cut(s)	711, 789
BstV2I	GAAGAC	1 cut(s)	805
BsuI	GTATCC	1 cut(s)	745
BtgZI	GCGATG	2 cut(s)	449, 804
BtsCI	GGATG	4 cut(s)	70, 349, 544, 684
BtsIMutI	CAGTG	3 cut(s)	114, 180, 598
CfoI	GCGC	1 cut(s)	441
Cfr13I	GGNCC	3 cut(s)	580, 779, 821
CseI	GACGC	3 cut(s)	140, 372, 552
CsiI	ACCWGGT	1 cut(s)	817
Csp6I	GTAC	1 cut(s)	90
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	3 cut(s)	217, 221, 535
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	117, 264
DpnI	GATC	6 cut(s)	186, 408, 474, 486, 492, 618
DpnII	GATC	6 cut(s)	184, 406, 472, 484, 490, 616
DraI	TTTAAA	1 cut(s)	355
DraIII	CACNNNGTG	1 cut(s)	120
DrdI	GACNNNNNNGTC	1 cut(s)	369
DseDI	GACNNNNNNGTC	1 cut(s)	369
Eco24I	GRGCYC	2 cut(s)	270, 382
Eco31I	GGTCTC	1 cut(s)	645
Eco47I	GGWCC	3 cut(s)	580, 779, 821
Eco72I	CACGTG	1 cut(s)	158
Eco88I	CYCGRG	2 cut(s)	324, 381
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	4 cut(s)	367, 646, 817, 844
EcoT22I	ATGCAT	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	270, 382
FaeI	CATG	3 cut(s)	220, 224, 538
FaqI	GGGAC	4 cut(s)	576, 593, 749, 792
FatI	CATG	3 cut(s)	216, 220, 534
FauI	CCCGC	3 cut(s)	498, 504, 704
FauNDI	CATATG	1 cut(s)	865
FbaI	TGATCA	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	291
FokI	GGATG	4 cut(s)	77, 356, 551, 691
FriOI	GRGCYC	2 cut(s)	270, 382
FspBI	CTAG	1 cut(s)	837
GlaI	GCGC	1 cut(s)	440
GsuI	CTGGAG	2 cut(s)	515, 867
HgaI	GACGC	3 cut(s)	140, 372, 552
HhaI	GCGC	1 cut(s)	441
Hin1I	GRCGYC	3 cut(s)	151, 364, 544
Hin1II	CATG	3 cut(s)	220, 224, 538
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HinfI	GANTC	1 cut(s)	39
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	3 cut(s)	155, 256, 292
Hpy188I	TCNGA	2 cut(s)	126, 422
Hpy188III	TCNNGA	8 cut(s)	29, 324, 383, 410, 488, 494, 614, 695
Hpy8I	GTNNAC	3 cut(s)	155, 256, 292
HpyAV	CCTTC	3 cut(s)	219, 325, 867
HpyCH4III	ACNGT	4 cut(s)	417, 593, 656, 833
HpyCH4IV	ACGT	2 cut(s)	157, 871
HpyCH4V	TGCA	3 cut(s)	206, 220, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 357
HpyF3I	CTNAG	2 cut(s)	117, 264
HpySE526I	ACGT	2 cut(s)	157, 871
Hsp92I	GRCGYC	3 cut(s)	151, 364, 544
Hsp92II	CATG	3 cut(s)	220, 224, 538
HspAI	GCGC	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	6 cut(s)	184, 406, 472, 484, 490, 616
LmnI	GCTCC	4 cut(s)	194, 502, 508, 514
LweI	GCATC	3 cut(s)	193, 426, 669
MabI	ACCWGGT	1 cut(s)	817
MaeI	CTAG	1 cut(s)	837
MaeII	ACGT	2 cut(s)	157, 871
MaeIII	GTNAC	4 cut(s)	67, 401, 548, 758
MalI	GATC	6 cut(s)	186, 408, 474, 486, 492, 618
MbiI	CCGCTC	2 cut(s)	505, 511
MboI	GATC	6 cut(s)	184, 406, 472, 484, 490, 616
MboII	GAAGA	3 cut(s)	34, 296, 810
MhlI	GDGCHC	2 cut(s)	270, 382
MluCI	AATT	2 cut(s)	207, 296
MnlI	CCTC	9 cut(s)	44, 185, 305, 320, 334, 492, 621, 787, 842
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	3 cut(s)	210, 299, 354
MslI	CAYNNNNRTG	2 cut(s)	219, 251
MspR9I	CCNGG	4 cut(s)	369, 648, 819, 846
MvaI	CCWGG	4 cut(s)	369, 648, 819, 846
MvnI	CGCG	2 cut(s)	711, 789
MwoI	GCNNNNNNNGC	2 cut(s)	203, 357
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	6 cut(s)	184, 406, 472, 484, 490, 616
NlaIII	CATG	3 cut(s)	220, 224, 538
NlaIV	GGNNCC	3 cut(s)	337, 581, 780
NmuCI	GTSAC	4 cut(s)	67, 401, 548, 758
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	1 cut(s)	220
PaeR7I	CTCGAG	2 cut(s)	324, 381
PcsI	WCGNNNNNNNCGW	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	819
PflMI	CCANNNNNTGG	1 cut(s)	398
PfoI	TCCNGGA	1 cut(s)	844
Ple19I	CGATCG	1 cut(s)	409
PmaCI	CACGTG	1 cut(s)	158
PmlI	CACGTG	1 cut(s)	158
Ppu21I	YACGTR	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	821
Psp1406I	AACGTT	1 cut(s)	871
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	4 cut(s)	367, 646, 817, 844
PspCI	CACGTG	1 cut(s)	158
PspGI	CCWGG	4 cut(s)	367, 646, 817, 844
PspN4I	GGNNCC	3 cut(s)	337, 581, 780
PspPI	GGNCC	3 cut(s)	580, 779, 821
PspPPI	RGGWCCY	1 cut(s)	821
PsyI	GACNNNGTC	1 cut(s)	819
PvuI	CGATCG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	2 cut(s)	219, 251
SaqAI	TTAA	3 cut(s)	210, 299, 354
Sau3AI	GATC	6 cut(s)	184, 406, 472, 484, 490, 616
Sau96I	GGNCC	3 cut(s)	580, 779, 821
ScrFI	CCNGG	4 cut(s)	369, 648, 819, 846
SduI	GDGCHC	2 cut(s)	270, 382
SexAI	ACCWGGT	1 cut(s)	817
SfaNI	GCATC	3 cut(s)	193, 426, 669
SfcI	CTRYAG	2 cut(s)	574, 805
Sfr274I	CTCGAG	2 cut(s)	324, 381
SinI	GGWCC	3 cut(s)	580, 779, 821
SlaI	CTCGAG	2 cut(s)	324, 381
SmiMI	CAYNNNNRTG	2 cut(s)	219, 251
SmlI	CTYRAG	5 cut(s)	29, 83, 324, 381, 695
SmoI	CTYRAG	5 cut(s)	29, 83, 324, 381, 695
Sse9I	AATT	2 cut(s)	207, 296
SsiI	CCGC	6 cut(s)	100, 505, 511, 529, 583, 711
SspMI	CTAG	1 cut(s)	837
StyD4I	CCNGG	4 cut(s)	367, 646, 817, 844
TaaI	ACNGT	4 cut(s)	417, 593, 656, 833
TaiI	ACGT	2 cut(s)	160, 874
TaqI	TCGA	4 cut(s)	325, 382, 409, 588
TaqII	GACCGA	2 cut(s)	567, 796
TasI	AATT	2 cut(s)	207, 296
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	3 cut(s)	210, 299, 354
Tru9I	TTAA	3 cut(s)	210, 299, 354
TscAI	CASTG	3 cut(s)	121, 187, 598
TseFI	GTSAC	4 cut(s)	67, 401, 548, 758
Tsp45I	GTSAC	4 cut(s)	67, 401, 548, 758
TspDTI	ATGAA	4 cut(s)	17, 309, 717, 849
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	3 cut(s)	121, 187, 598
Tth111I	GACNNNGTC	1 cut(s)	819
Van91I	CCANNNNNTGG	1 cut(s)	398
VpaK11BI	GGWCC	3 cut(s)	580, 779, 821
XceI	RCATGY	1 cut(s)	220
XhoI	CTCGAG	2 cut(s)	324, 381
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	837
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.