Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Reverse (-)

18709409 .. 18714002

Gene Structure 4594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTGTCCATGCCACACAAGCGAGATGAAAGAACATGAGACTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGCAGGGAAGGAAGAGTACAGAATATTCGTGGGCGGGTTGTCGTGGGACGTCACGGAGCGTCAGATGGAAAGCGCTTTCCAACGTTTCGGCAAAGTTCTTGAAGCTCAGATCATGATGGAAAGAGATACAAACCGACCTCGAGGTTTTGGGTTTATTACATTTGGGGATCGGCGAGCAATGGAAGATGCAATCCGGGAGATGCATGGGCGGGAGCTTGGTGATCGCATAATCTCTGTGAACAAAGCTCAACCCAAAATGGGAGGGGGAGGAGCAGGAGAGGATTCTGACCATGGCTATAGAGGTGGTGGTTACTCGTCTGGTGGCAGGAGAAACTATGGGGGAGGAGATAGACCTGTTGGACAAGATGAATGCTTCAAGTGTGGGCGAACAGGACATTGGGCCCGAGATTGCCCTTCGGCAGGTGGTGGAAGAGGTGGTGGAGGTTCATTTTCATCACATTCTAGGTTTGGGGCTGGTGGCCGTGGGGATCGTTTTGGTGGAGACCGCGGTCGCTACATGGATGATCGTTATGATGGAGGGCGCTATGGAGACAGGGACCGTTTTGACAGCAGAGATGACAAATATGGGAGCCGTGATCGCTATGTTAGTGACAGGTACCCAGCTGGTGATCGTTTTGCAAGTGACAGGTACGGTGGTTCTGATCGTTACCCGCAGAATGGTTATGGCAAAGATAGAGGCTATGATAGGGACGGTGGCCCAAGAGGAGGCGACAGATATGCTAGTGGAGGGCCTGCGAGAGACGACAATTACAGAAGCAGGCCAGGTCCTTATGACCGCCCTAGCAGGGGAGGGCGCCCATCGTCATTTGACCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

305

Amino Acids

34.08

Weight (kDa)

9.01

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	485
AatII	GACGTC	1 cut(s)	126
AbsI	CCTCGAGG	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	485
Acc65I	GGTACC	1 cut(s)	690
AccB1I	GGYRCC	2 cut(s)	690, 888
AccII	CGCG	1 cut(s)	582
AciI	CCGC	6 cut(s)	108, 283, 580, 582, 746, 871
AclI	AACGTT	1 cut(s)	157
AclWI	GGATC	2 cut(s)	249, 570
AcoI	YGGCCR	1 cut(s)	553
AcyI	GRCGYC	2 cut(s)	123, 889
AfaI	GTAC	3 cut(s)	92, 692, 725
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	6 cut(s)	332, 494, 752, 800, 880, 881
AgsI	TTSAA	2 cut(s)	176, 451
AjnI	CCWGG	1 cut(s)	856
AjuI	GAANNNNNNNTTGG	2 cut(s)	454, 486
AluBI	AGCT	4 cut(s)	179, 289, 320, 698
AluI	AGCT	4 cut(s)	179, 289, 320, 698
Alw26I	GTCTC	4 cut(s)	32, 570, 618, 828
AlwI	GGATC	2 cut(s)	249, 570
Ama87I	CYCGRG	2 cut(s)	213, 477
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	5 cut(s)	474, 553, 790, 824, 854
ApaI	GGGCCC	1 cut(s)	478
Asp718I	GGTACC	1 cut(s)	690
AspLEI	GCGC	3 cut(s)	149, 618, 891
AspS9I	GGNCC	6 cut(s)	474, 475, 631, 791, 824, 860
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	305, 713
AvaI	CYCGRG	2 cut(s)	213, 477
AvaII	GGWCC	2 cut(s)	631, 860
BaeGI	GKGCMC	1 cut(s)	478
BaeI	ACNNNNGTAYC	2 cut(s)	715, 748
BanI	GGYRCC	2 cut(s)	690, 888
BanII	GRGCYC	1 cut(s)	478
BarI	GAAGNNNNNNTAC	2 cut(s)	74, 106
BccI	CCATC	5 cut(s)	67, 133, 184, 602, 901
BceAI	ACGGC	2 cut(s)	540, 651
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BciT130I	CCWGG	1 cut(s)	858
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	4 cut(s)	32, 570, 618, 828
BfaI	CTAG	4 cut(s)	42, 537, 816, 876
BfmI	CTRYAG	1 cut(s)	370
BfoI	RGCGCY	3 cut(s)	150, 619, 892
BfuAI	ACCTGC	1 cut(s)	485
Bme1390I	CCNGG	2 cut(s)	269, 858
Bme18I	GGWCC	2 cut(s)	631, 860
BmeT110I	CYCGRG	2 cut(s)	213, 477
BmgT120I	GGNCC	6 cut(s)	474, 475, 631, 791, 824, 860
BmiI	GGNNCC	5 cut(s)	476, 632, 665, 692, 890
BmrFI	CCNGG	2 cut(s)	269, 858
BmsI	GCATC	2 cut(s)	250, 264
BoxI	GACNNNNGTC	1 cut(s)	582
BpuMI	CCSGG	1 cut(s)	269
BsaHI	GRCGYC	2 cut(s)	123, 889
BsaI	GGTCTC	1 cut(s)	570
BsaJI	CCNNGG	3 cut(s)	364, 556, 580
Bsc4I	CCNNNNNNNGG	6 cut(s)	332, 494, 752, 800, 880, 881
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	858
BseDI	CCNNGG	3 cut(s)	364, 556, 580
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	6 cut(s)	332, 494, 752, 800, 880, 881
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	194
BseRI	GAGGAG	3 cut(s)	357, 432, 813
BseSI	GKGCMC	1 cut(s)	478
BseYI	CCCAGC	1 cut(s)	694
Bsh1236I	CGCG	1 cut(s)	582
Bsh1285I	CGRYCG	1 cut(s)	586
BshFI	GGCC	5 cut(s)	476, 555, 792, 826, 856
BshNI	GGYRCC	2 cut(s)	690, 888
BsiEI	CGRYCG	1 cut(s)	586
BsiHKCI	CYCGRG	2 cut(s)	213, 477
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	3 cut(s)	134, 644, 797
BslI	CCNNNNNNNGG	6 cut(s)	332, 494, 752, 800, 880, 881
BsmAI	GTCTC	4 cut(s)	32, 570, 618, 828
BsmBI	CGTCTC	1 cut(s)	828
BsmFI	GGGAC	3 cut(s)	134, 644, 797
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	5 cut(s)	476, 555, 792, 826, 856
Bso31I	GGTCTC	1 cut(s)	570
BsoBI	CYCGRG	2 cut(s)	213, 477
Bsp120I	GGGCCC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	8 cut(s)	183, 241, 295, 562, 598, 670, 703, 736
Bsp19I	CCATGG	1 cut(s)	364
BspACI	CCGC	6 cut(s)	108, 283, 580, 582, 746, 871
BspANI	GGCC	5 cut(s)	476, 555, 792, 826, 856
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	582
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	5 cut(s)	476, 632, 665, 692, 890
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	249, 570
BspT107I	GGYRCC	2 cut(s)	690, 888
BspTNI	GGTCTC	1 cut(s)	570
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	3 cut(s)	364, 556, 580
BssMI	GATC	8 cut(s)	183, 241, 295, 562, 598, 670, 703, 736
BssNI	GRCGYC	2 cut(s)	123, 889
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	4 cut(s)	635, 728, 788, 908
Bst6I	CTCTTC	2 cut(s)	81, 499
BstACI	GRCGYC	2 cut(s)	123, 889
BstC8I	GCNNGC	3 cut(s)	249, 828, 854
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	3 cut(s)	364, 556, 580
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	601
BstFNI	CGCG	1 cut(s)	582
BstH2I	RGCGCY	3 cut(s)	150, 619, 892
BstHHI	GCGC	3 cut(s)	149, 618, 891
BstKTI	GATC	8 cut(s)	186, 244, 298, 565, 601, 673, 706, 739
BstMAI	GTCTC	4 cut(s)	32, 570, 618, 828
BstMBI	GATC	8 cut(s)	183, 241, 295, 562, 598, 670, 703, 736
BstMCI	CGRYCG	1 cut(s)	586
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 672
BstNI	CCWGG	1 cut(s)	858
BstPAI	GACNNNNGTC	1 cut(s)	582
BstSCI	CCNGG	2 cut(s)	267, 856
BstSFI	CTRYAG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	478
BstUI	CGCG	1 cut(s)	582
BsuRI	GGCC	5 cut(s)	476, 555, 792, 826, 856
BtgI	CCRYGG	3 cut(s)	364, 556, 580
BtsCI	GGATG	1 cut(s)	601
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	3 cut(s)	249, 828, 854
CciI	TCATGA	1 cut(s)	186
CfoI	GCGC	3 cut(s)	149, 618, 891
Cfr13I	GGNCC	6 cut(s)	474, 475, 631, 791, 824, 860
Cfr42I	CCGCGG	1 cut(s)	583
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	91, 691, 724
CviAII	CATG	6 cut(s)	9, 35, 187, 278, 365, 592
CviQI	GTAC	3 cut(s)	91, 691, 724
DdeI	CTNAG	1 cut(s)	180
DinI	GGCGCC	1 cut(s)	890
DpnI	GATC	8 cut(s)	185, 243, 297, 564, 600, 672, 705, 738
DpnII	GATC	8 cut(s)	183, 241, 295, 562, 598, 670, 703, 736
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	2 cut(s)	81, 499
EarI	CTCTTC	2 cut(s)	81, 499
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	631, 860
Eco47III	AGCGCT	1 cut(s)	148
Eco88I	CYCGRG	2 cut(s)	213, 477
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoO109I	RGGNCCY	2 cut(s)	824, 860
EcoRII	CCWGG	1 cut(s)	856
EcoT14I	CCWWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	478
EgeI	GGCGCC	1 cut(s)	890
EheI	GGCGCC	1 cut(s)	890
ErhI	CCWWGG	1 cut(s)	364
Esp3I	CGTCTC	1 cut(s)	828
FaeI	CATG	6 cut(s)	12, 38, 190, 281, 368, 595
FaqI	GGGAC	3 cut(s)	134, 644, 797
FatI	CATG	6 cut(s)	8, 34, 186, 277, 364, 591
FauI	CCCGC	3 cut(s)	101, 276, 753
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	478
FspBI	CTAG	4 cut(s)	42, 537, 816, 876
GlaI	GCGC	3 cut(s)	148, 617, 890
GsaI	CCCAGC	1 cut(s)	698
HaeII	RGCGCY	3 cut(s)	150, 619, 892
HaeIII	GGCC	5 cut(s)	476, 555, 792, 826, 856
HapII	CCGG	1 cut(s)	268
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	3 cut(s)	149, 618, 891
Hin1I	GRCGYC	2 cut(s)	123, 889
Hin1II	CATG	6 cut(s)	12, 38, 190, 281, 368, 595
Hin6I	GCGC	3 cut(s)	147, 616, 889
HinP1I	GCGC	3 cut(s)	147, 616, 889
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	2 cut(s)	305, 713
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	4 cut(s)	138, 183, 361, 736
Hpy188III	TCNNGA	2 cut(s)	173, 187
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	76, 498
HpyCH4III	ACNGT	4 cut(s)	635, 728, 788, 908
HpyCH4IV	ACGT	2 cut(s)	123, 157
HpyCH4V	TGCA	3 cut(s)	263, 277, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 672
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	2 cut(s)	123, 157
Hsp92I	GRCGYC	2 cut(s)	123, 889
Hsp92II	CATG	6 cut(s)	12, 38, 190, 281, 368, 595
HspAI	GCGC	3 cut(s)	147, 616, 889
KasI	GGCGCC	1 cut(s)	888
KpnI	GGTACC	1 cut(s)	694
KspI	CCGCGG	1 cut(s)	583
Kzo9I	GATC	8 cut(s)	183, 241, 295, 562, 598, 670, 703, 736
LmnI	GCTCC	4 cut(s)	130, 286, 344, 663
LweI	GCATC	2 cut(s)	250, 264
MaeI	CTAG	4 cut(s)	42, 537, 816, 876
MaeII	ACGT	2 cut(s)	123, 157
MaeIII	GTNAC	6 cut(s)	124, 383, 683, 716, 740, 908
MalI	GATC	8 cut(s)	185, 243, 297, 564, 600, 672, 705, 738
MboI	GATC	8 cut(s)	183, 241, 295, 562, 598, 670, 703, 736
MboII	GAAGA	3 cut(s)	98, 269, 516
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	1 cut(s)	841
Mly113I	GGCGCC	1 cut(s)	889
MmeI	TCCRAC	2 cut(s)	178, 412
Mph1103I	ATGCAT	1 cut(s)	279
MspA1I	CMGCKG	2 cut(s)	582, 698
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	2 cut(s)	269, 858
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	858
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	2 cut(s)	18, 672
NarI	GGCGCC	1 cut(s)	889
NciI	CCSGG	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	364
NdeII	GATC	8 cut(s)	183, 241, 295, 562, 598, 670, 703, 736
NlaIII	CATG	6 cut(s)	12, 38, 190, 281, 368, 595
NlaIV	GGNNCC	5 cut(s)	476, 632, 665, 692, 890
NmuCI	GTSAC	3 cut(s)	124, 683, 716
NsiI	ATGCAT	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	213
PagI	TCATGA	1 cut(s)	186
PaqCI	CACCTGC	1 cut(s)	485
PctI	GAATGC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	267
PluTI	GGCGCC	1 cut(s)	892
PpuMI	RGGWCCY	1 cut(s)	860
PshAI	GACNNNNGTC	1 cut(s)	582
Psp1406I	AACGTT	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	856
PspFI	CCCAGC	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	856
PspN4I	GGNNCC	5 cut(s)	476, 632, 665, 692, 890
PspOMI	GGGCCC	1 cut(s)	474
PspPI	GGNCC	6 cut(s)	474, 475, 631, 791, 824, 860
PspPPI	RGGWCCY	1 cut(s)	860
PspXI	VCTCGAGB	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	3 cut(s)	92, 692, 725
RsaNI	GTAC	3 cut(s)	91, 691, 724
SacII	CCGCGG	1 cut(s)	583
Sau3AI	GATC	8 cut(s)	183, 241, 295, 562, 598, 670, 703, 736
Sau96I	GGNCC	6 cut(s)	474, 475, 631, 791, 824, 860
ScrFI	CCNGG	2 cut(s)	269, 858
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	2 cut(s)	250, 264
SfcI	CTRYAG	1 cut(s)	370
SfoI	GGCGCC	1 cut(s)	890
Sfr274I	CTCGAG	1 cut(s)	213
Sfr303I	CCGCGG	1 cut(s)	583
SgrBI	CCGCGG	1 cut(s)	583
SinI	GGWCC	2 cut(s)	631, 860
SlaI	CTCGAG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	841
SsiI	CCGC	6 cut(s)	108, 283, 580, 582, 746, 871
SspDI	GGCGCC	1 cut(s)	888
SspI	AATATT	1 cut(s)	99
SspMI	CTAG	4 cut(s)	42, 537, 816, 876
StyD4I	CCNGG	2 cut(s)	267, 856
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	4 cut(s)	635, 728, 788, 908
TaiI	ACGT	2 cut(s)	126, 160
TaqI	TCGA	1 cut(s)	214
TasI	AATT	1 cut(s)	841
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	356
TseFI	GTSAC	3 cut(s)	124, 683, 716
Tsp45I	GTSAC	3 cut(s)	124, 683, 716
TspDTI	ATGAA	4 cut(s)	41, 456, 510, 516
TspGWI	ACGGA	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	631, 860
XagI	CCTNNNNNAGG	1 cut(s)	492
XhoI	CTCGAG	1 cut(s)	213
XspI	CTAG	4 cut(s)	42, 537, 816, 876
ZraI	GACGTC	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.