Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000174.1

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Reverse (-)

142938 .. 145463

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000174.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgggagcgtcgcttggtggtacgaaggtggattccaagggatccagatcggatcagggtgacccatgttggtttgagtcgtttggagtcaccttgtggagaggggtggcggcgatgcatgatggctggttagggttggtggagagaggggctgccggcctgaggttgcccaatgcgatggttgggttggctgccggtgggtggatgatggggctttgtcttgcggattggtgcgtatcacagatgctatatagatgcagaagttcagtccatgaatctcagatcatggtggaaagagatacatggcgtcttcgtggttttgtgttcattacatttggagatcgacgggcaatggaagatgcaatccgggagatgcacagaagggaattgggtgcccacatcatctccgtgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

138

Amino Acids

15.32

Weight (kDa)

7.74

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AciI	CCGC	2 cut(s)	110, 224
AclWI	GGATC	3 cut(s)	36, 49, 60
AcyI	GRCGYC	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	2 cut(s)	162, 201
AlwI	GGATC	3 cut(s)	36, 49, 60
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	152, 191
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	71, 82
AxyI	CCTNAGG	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BamHI	GGATCC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	139, 178
BccI	CCATC	3 cut(s)	116, 172, 202
BcnI	CCSGG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	111, 153, 192
BlsI	GCNGC	3 cut(s)	112, 154, 193
Bme1390I	CCNGG	1 cut(s)	368
BmiI	GGNNCC	2 cut(s)	43, 394
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	5 cut(s)	105, 234, 245, 349, 363
BpiI	GAAGAC	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 201
Bse118I	RCCGGY	2 cut(s)	155, 194
Bse21I	CCTNAGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	210
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	162, 201
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	2 cut(s)	152, 293
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	139, 178
BshFI	GGCC	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	156, 195, 367
BslI	CCNNNNNNNGG	2 cut(s)	162, 201
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	5 cut(s)	41, 47, 52, 282, 340
BspACI	CCGC	2 cut(s)	110, 224
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	2 cut(s)	153, 292
BspLI	GGNNCC	2 cut(s)	43, 394
BspPI	GGATC	3 cut(s)	36, 49, 60
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	2 cut(s)	155, 194
BssAI	RCCGGY	2 cut(s)	155, 194
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	41, 47, 52, 282, 340
BssNI	GRCGYC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	161, 279
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	5 cut(s)	44, 50, 55, 285, 343
BstMBI	GATC	5 cut(s)	41, 47, 52, 282, 340
BstPI	GGTNACC	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	2 cut(s)	139, 178
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	41
Bsu36I	CCTNAGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	159
BtgZI	GCGATG	2 cut(s)	128, 191
BtsCI	GGATG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	157
Cfr10I	RCCGGY	2 cut(s)	155, 194
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	5 cut(s)	66, 119, 272, 286, 303
CviJI	RGCY	5 cut(s)	126, 152, 159, 191, 214
CviKI_1	RGCY	5 cut(s)	126, 152, 159, 191, 214
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	161, 279
DpnI	GATC	5 cut(s)	43, 49, 54, 284, 342
DpnII	GATC	5 cut(s)	41, 47, 52, 282, 340
DraIII	CACNNNGTG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	161
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	5 cut(s)	69, 122, 275, 289, 306
FaiI	YATR	7 cut(s)	67, 120, 250, 252, 273, 287, 304
FatI	CATG	5 cut(s)	65, 118, 271, 285, 302
Fnu4HI	GCNGC	3 cut(s)	111, 153, 192
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	3 cut(s)	111, 153, 192
GluI	GCNGC	3 cut(s)	111, 153, 192
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	3 cut(s)	156, 195, 367
HgaI	GACGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	5 cut(s)	69, 122, 275, 289, 306
HinfI	GANTC	4 cut(s)	32, 77, 87, 275
HpaII	CCGG	3 cut(s)	156, 195, 367
HphI	GGTGA	2 cut(s)	71, 82
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	52, 282
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	2 cut(s)	13, 348
HpyAV	CCTTC	2 cut(s)	19, 375
HpyCH4V	TGCA	4 cut(s)	118, 258, 362, 376
HpyF3I	CTNAG	2 cut(s)	161, 279
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	5 cut(s)	69, 122, 275, 289, 306
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	41, 47, 52, 282, 340
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	7 cut(s)	41, 58, 112, 169, 173, 208, 380
Lsp1109I	GCAGC	2 cut(s)	139, 178
LweI	GCATC	5 cut(s)	105, 234, 245, 349, 363
MaeIII	GTNAC	2 cut(s)	59, 88
MalI	GATC	5 cut(s)	43, 49, 54, 284, 342
MboI	GATC	5 cut(s)	41, 47, 52, 282, 340
MboII	GAAGA	2 cut(s)	302, 368
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	1 cut(s)	386
MlyI	GAGTC	2 cut(s)	86, 96
MnlI	CCTC	3 cut(s)	95, 140, 156
Mph1103I	ATGCAT	1 cut(s)	120
MroNI	GCCGGC	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	407
MspI	CCGG	3 cut(s)	156, 195, 367
MspR9I	CCNGG	1 cut(s)	368
NaeI	GCCGGC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	5 cut(s)	41, 47, 52, 282, 340
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	69, 122, 275, 289, 306
NlaIV	GGNNCC	2 cut(s)	43, 394
NmuCI	GTSAC	2 cut(s)	59, 88
NsiI	ATGCAT	1 cut(s)	120
PdiI	GCCGGC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	32, 275
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	112, 154, 193
PleI	GAGTC	2 cut(s)	85, 95
PpsI	GAGTC	2 cut(s)	85, 95
PspEI	GGTNACC	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	43, 394
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	407
SatI	GCNGC	3 cut(s)	111, 153, 192
Sau3AI	GATC	5 cut(s)	41, 47, 52, 282, 340
SchI	GAGTC	2 cut(s)	86, 96
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	3 cut(s)	30, 95, 167
SfaNI	GCATC	5 cut(s)	105, 234, 245, 349, 363
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	2 cut(s)	110, 224
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	343
TasI	AATT	1 cut(s)	386
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	32, 275
TseFI	GTSAC	2 cut(s)	59, 88
TseI	GCWGC	2 cut(s)	152, 191
Tsp45I	GTSAC	2 cut(s)	59, 88
TspDTI	ATGAA	2 cut(s)	288, 316
TspGWI	ACGGA	1 cut(s)	397
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.