Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Reverse (-)

21441229 .. 21445693

Gene Structure 4465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1101500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCAGGGAAGGAAGACTACCGTATATTCGTGGGAGGGTTGTCGTGGGACGTGACGGAGCGTCAGCTGGAGAGCGCTTTCCAACGCTTCGGCAAAGTTCTTGAAGCTCAGATCATGATGGAAAGAGATACAAACCGTCCCCGAGGTTTTGGGTTTATTACATTTGGAGATCGGCGAGCAATGGAAGATGCAATCCGGGAGATGCATGGGCGGGAGCTTAGTGATCGCATAATCTCTGTGAACAAAGCTCAACCCAAAATGGGAGTGGGAGGAGCTGGAGAGGATTCTGACCATGGCTACAGAGGAGGTGGCTACTCATCTGGTGGCAGGAGAAACTATGGGGGAGGAGATAGACCTGTAGGACAAGATGAATGCTTCAAGTGTGGTCGACCAGGACATTGGGCCCGAGATTGCCCTTCAGCGGGAGGCGGAAGAGGCGGTGGAGGTTCGTTCTCATCACATTCTAGGTTTGGGGCTGGTGGCCGTGGGGATCGCTTTGGTGGAGACCGTGACCGCTACATGGATGACCGTTATGATGGAGGGCGCTATGGAGAGAGGGACCGTTTTGACAGCAGAGATGACAAATATGGTAGCCGTGATCGCTATGCTAGCGACAGGTACCCAGCCGGTGATCGTTTTACAAGTGACAGGTACGGTGGTTCTGATCGTTATCCTCAAAATGGTTATGGCAAAGATAGAGGCTATGATAGGGATGGTGGCGCAAGAGGAGGAGACAGGTATGCAAGCGGAGGGCCAGCTAGAGGCGATAATTACAGAAGCAGGCCTGGTCCTTATGACCGCCCTAGCAGGGGAGGCCGCCCATCTTCCTTTGACCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

281

Amino Acids

31.03

Weight (kDa)

9.37

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	8 - 68	2.2e-07	RNA recognition motif
RRM_1	PF00076	9 - 78	1.1e-19	RNA recognition motif
zf-CCHC	PF00098	124 - 140	1.4e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	618
AccI	GTMKAC	1 cut(s)	388
AciI	CCGC	8 cut(s)	211, 422, 429, 438, 514, 747, 799, 817
AclWI	GGATC	1 cut(s)	498
AcoI	YGGCCR	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	2 cut(s)	620, 653
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	8 cut(s)	260, 421, 422, 520, 680, 761, 808, 809
AgsI	TTSAA	2 cut(s)	104, 379
AhdI	GACNNNNNGTC	1 cut(s)	60
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	391, 784
AluBI	AGCT	6 cut(s)	67, 107, 217, 248, 275, 758
AluI	AGCT	6 cut(s)	67, 107, 217, 248, 275, 758
Alw26I	GTCTC	2 cut(s)	498, 726
AlwI	GGATC	1 cut(s)	498
Ama87I	CYCGRG	2 cut(s)	141, 405
Aor51HI	AGCGCT	1 cut(s)	76
AoxI	GGCC	5 cut(s)	402, 481, 752, 782, 814
ApaI	GGGCCC	1 cut(s)	406
Asp718I	GGTACC	1 cut(s)	618
AspLEI	GCGC	3 cut(s)	77, 546, 722
AspS9I	GGNCC	5 cut(s)	402, 403, 559, 752, 788
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	641
AsuNHI	GCTAGC	1 cut(s)	608
AvaI	CYCGRG	2 cut(s)	141, 405
AvaII	GGWCC	2 cut(s)	559, 788
BaeGI	GKGCMC	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	643, 676
BanI	GGYRCC	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	21
BccI	CCATC	4 cut(s)	112, 530, 707, 829
BceAI	ACGGC	2 cut(s)	468, 579
BciT130I	CCWGG	2 cut(s)	393, 786
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	498, 726
BfaI	CTAG	4 cut(s)	465, 609, 759, 804
BfmI	CTRYAG	2 cut(s)	298, 357
BfoI	RGCGCY	2 cut(s)	78, 547
BisI	GCNGC	1 cut(s)	817
BlsI	GCNGC	1 cut(s)	818
Bme1390I	CCNGG	3 cut(s)	197, 393, 786
Bme18I	GGWCC	2 cut(s)	559, 788
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmeT110I	CYCGRG	2 cut(s)	141, 405
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	5 cut(s)	402, 403, 559, 752, 788
BmiI	GGNNCC	3 cut(s)	404, 560, 620
BmrFI	CCNGG	3 cut(s)	197, 393, 786
BmsI	GCATC	2 cut(s)	178, 192
BmtI	GCTAGC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	2 cut(s)	89, 297
BpuMI	CCSGG	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	142, 292, 484
Bsc4I	CCNNNNNNNGG	8 cut(s)	260, 421, 422, 520, 680, 761, 808, 809
Bse118I	RCCGGY	1 cut(s)	626
Bse3DI	GCAATG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	393, 786
BseDI	CCNNGG	3 cut(s)	142, 292, 484
BseGI	GGATG	2 cut(s)	529, 718
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	8 cut(s)	260, 421, 422, 520, 680, 761, 808, 809
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	5 cut(s)	285, 318, 360, 741, 744
BseSI	GKGCMC	1 cut(s)	406
BseYI	CCCAGC	1 cut(s)	622
BshFI	GGCC	5 cut(s)	404, 483, 754, 784, 816
BshNI	GGYRCC	1 cut(s)	618
BsiHKCI	CYCGRG	2 cut(s)	141, 405
BsiSI	CCGG	2 cut(s)	196, 627
BslFI	GGGAC	3 cut(s)	62, 123, 572
BslI	CCNNNNNNNGG	8 cut(s)	260, 421, 422, 520, 680, 761, 808, 809
BsmAI	GTCTC	2 cut(s)	498, 726
BsmFI	GGGAC	3 cut(s)	62, 123, 572
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	5 cut(s)	404, 483, 754, 784, 816
Bso31I	GGTCTC	1 cut(s)	498
BsoBI	CYCGRG	2 cut(s)	141, 405
Bsp120I	GGGCCC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	7 cut(s)	111, 169, 223, 490, 598, 631, 664
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	8 cut(s)	211, 422, 429, 438, 514, 747, 799, 817
BspANI	GGCC	5 cut(s)	404, 483, 754, 784, 816
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	404, 560, 620
BspOI	GCTAGC	1 cut(s)	612
BspPI	GGATC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	618
BspTNI	GGTCTC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	626
BssAI	RCCGGY	1 cut(s)	626
BssECI	CCNNGG	3 cut(s)	142, 292, 484
BssMI	GATC	7 cut(s)	111, 169, 223, 490, 598, 631, 664
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	393, 786
Bst4CI	ACNGT	7 cut(s)	23, 137, 509, 530, 563, 656, 836
Bst6I	CTCTTC	1 cut(s)	427
BstC8I	GCNNGC	5 cut(s)	177, 610, 745, 756, 782
BstDEI	CTNAG	2 cut(s)	108, 218
BstDSI	CCRYGG	2 cut(s)	292, 484
BstF5I	GGATG	2 cut(s)	529, 718
BstH2I	RGCGCY	2 cut(s)	78, 547
BstHHI	GCGC	3 cut(s)	77, 546, 722
BstKTI	GATC	7 cut(s)	114, 172, 226, 493, 601, 634, 667
BstMAI	GTCTC	2 cut(s)	498, 726
BstMBI	GATC	7 cut(s)	111, 169, 223, 490, 598, 631, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	435, 600, 609, 813
BstNI	CCWGG	2 cut(s)	393, 786
BstSCI	CCNGG	3 cut(s)	195, 391, 784
BstSFI	CTRYAG	2 cut(s)	298, 357
BstSLI	GKGCMC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	399
BsuRI	GGCC	5 cut(s)	404, 483, 754, 784, 816
BtgI	CCRYGG	2 cut(s)	292, 484
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	529, 718
Cac8I	GCNNGC	5 cut(s)	177, 610, 745, 756, 782
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	3 cut(s)	77, 546, 722
Cfr10I	RCCGGY	1 cut(s)	626
Cfr13I	GGNCC	5 cut(s)	402, 403, 559, 752, 788
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	619, 652
CviAII	CATG	4 cut(s)	115, 206, 293, 520
CviQI	GTAC	2 cut(s)	619, 652
DdeI	CTNAG	2 cut(s)	108, 218
DpnI	GATC	7 cut(s)	113, 171, 225, 492, 600, 633, 666
DpnII	GATC	7 cut(s)	111, 169, 223, 490, 598, 631, 664
DriI	GACNNNNNGTC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	427
Eam1105I	GACNNNNNGTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	427
EciI	GGCGGA	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	784
Eco24I	GRGCYC	1 cut(s)	406
Eco31I	GGTCTC	1 cut(s)	498
Eco47I	GGWCC	2 cut(s)	559, 788
Eco47III	AGCGCT	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	2 cut(s)	141, 405
EcoRII	CCWGG	2 cut(s)	391, 784
EcoT14I	CCWWGG	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	4 cut(s)	118, 209, 296, 523
FaqI	GGGAC	3 cut(s)	62, 123, 572
FatI	CATG	4 cut(s)	114, 205, 292, 519
FauI	CCCGC	2 cut(s)	204, 415
FblI	GTMKAC	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	817
FokI	GGATG	2 cut(s)	536, 725
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	1 cut(s)	817
FspBI	CTAG	4 cut(s)	465, 609, 759, 804
GlaI	GCGC	3 cut(s)	76, 545, 721
GluI	GCNGC	1 cut(s)	817
GsaI	CCCAGC	1 cut(s)	626
GsuI	CTGGAG	2 cut(s)	89, 297
HaeII	RGCGCY	2 cut(s)	78, 547
HaeIII	GGCC	5 cut(s)	404, 483, 754, 784, 816
HapII	CCGG	2 cut(s)	196, 627
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	3 cut(s)	77, 546, 722
Hin1II	CATG	4 cut(s)	118, 209, 296, 523
Hin6I	GCGC	3 cut(s)	75, 544, 720
HinP1I	GCGC	3 cut(s)	75, 544, 720
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	2 cut(s)	196, 627
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	2 cut(s)	241, 389
Hpy188I	TCNGA	3 cut(s)	111, 289, 664
Hpy188III	TCNNGA	2 cut(s)	101, 115
Hpy8I	GTNNAC	2 cut(s)	241, 389
HpyAV	CCTTC	2 cut(s)	4, 426
HpyCH4III	ACNGT	7 cut(s)	23, 137, 509, 530, 563, 656, 836
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	3 cut(s)	191, 205, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	435, 600, 609, 813
HpyF3I	CTNAG	2 cut(s)	108, 218
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	118, 209, 296, 523
HspAI	GCGC	3 cut(s)	75, 544, 720
KpnI	GGTACC	1 cut(s)	622
Kzo9I	GATC	7 cut(s)	111, 169, 223, 490, 598, 631, 664
LmnI	GCTCC	3 cut(s)	58, 214, 272
LweI	GCATC	2 cut(s)	178, 192
MaeI	CTAG	4 cut(s)	465, 609, 759, 804
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	4 cut(s)	52, 509, 644, 836
MalI	GATC	7 cut(s)	113, 171, 225, 492, 600, 633, 666
MboI	GATC	7 cut(s)	111, 169, 223, 490, 598, 631, 664
MboII	GAAGA	4 cut(s)	26, 197, 444, 816
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	1 cut(s)	769
MmeI	TCCRAC	1 cut(s)	106
Mph1103I	ATGCAT	1 cut(s)	207
MspA1I	CMGCKG	2 cut(s)	67, 422
MspI	CCGG	2 cut(s)	196, 627
MspR9I	CCNGG	3 cut(s)	197, 393, 786
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	2 cut(s)	393, 786
MwoI	GCNNNNNNNGC	4 cut(s)	435, 600, 609, 813
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	7 cut(s)	111, 169, 223, 490, 598, 631, 664
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	4 cut(s)	118, 209, 296, 523
NlaIV	GGNNCC	3 cut(s)	404, 560, 620
NmuCI	GTSAC	3 cut(s)	52, 509, 644
NsiI	ATGCAT	1 cut(s)	207
PagI	TCATGA	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	784
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	818
Psp6I	CCWGG	2 cut(s)	391, 784
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	2 cut(s)	391, 784
PspN4I	GGNNCC	3 cut(s)	404, 560, 620
PspOMI	GGGCCC	1 cut(s)	402
PspPI	GGNCC	5 cut(s)	402, 403, 559, 752, 788
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	620, 653
RsaNI	GTAC	2 cut(s)	619, 652
SalI	GTCGAC	1 cut(s)	387
SatI	GCNGC	1 cut(s)	817
Sau3AI	GATC	7 cut(s)	111, 169, 223, 490, 598, 631, 664
Sau96I	GGNCC	5 cut(s)	402, 403, 559, 752, 788
ScrFI	CCNGG	3 cut(s)	197, 393, 786
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	178, 192
SfcI	CTRYAG	2 cut(s)	298, 357
SinI	GGWCC	2 cut(s)	559, 788
Sse9I	AATT	1 cut(s)	769
SseBI	AGGCCT	1 cut(s)	784
SsiI	CCGC	8 cut(s)	211, 422, 429, 438, 514, 747, 799, 817
SspMI	CTAG	4 cut(s)	465, 609, 759, 804
StuI	AGGCCT	1 cut(s)	784
StyD4I	CCNGG	3 cut(s)	195, 391, 784
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	7 cut(s)	23, 137, 509, 530, 563, 656, 836
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	388
TasI	AATT	1 cut(s)	769
TauI	GCSGC	1 cut(s)	819
TfiI	GAWTC	1 cut(s)	284
TseFI	GTSAC	3 cut(s)	52, 509, 644
Tsp45I	GTSAC	3 cut(s)	52, 509, 644
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	71
VpaK11BI	GGWCC	2 cut(s)	559, 788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	388
XspI	CTAG	4 cut(s)	465, 609, 759, 804
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.