Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8090682.1

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Reverse (-)

284 .. 580

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8090682.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggtaggagaaaaagtactatacattagcacttatgctttactttttgcggttattctctccaggtacccagctggtgatcgttttgctagtgacagatatggaggttctgatcgctatcctcaaaatggctgtggcaaagacagaggctatgatagggatggtggagcaagaggtggcagtgatagatatggaaggggaggtccagcaagagatgagggaggttaccgtagcagggctggcccttacgaccgccctagcaggggagggcggccatcttcctttgaccgctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

98

Amino Acids

10.76

Weight (kDa)

9.71

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	66
AciI	CCGC	4 cut(s)	50, 253, 271, 289
AcoI	YGGCCR	1 cut(s)	272
AfaI	GTAC	2 cut(s)	18, 68
AfiI	CCNNNNNNNGG	4 cut(s)	128, 235, 262, 263
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AoxI	GGCC	2 cut(s)	241, 272
Asp718I	GGTACC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	203, 242
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	66
BccI	CCATC	2 cut(s)	155, 283
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	2 cut(s)	90, 258
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	203, 242
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	117
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 235, 262, 263
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	4 cut(s)	128, 235, 262, 263
BseYI	CCCAGC	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	243, 274
BshNI	GGYRCC	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	253
BslI	CCNNNNNNNGG	4 cut(s)	128, 235, 262, 263
BsnI	GGCC	2 cut(s)	243, 274
Bsp143I	GATC	2 cut(s)	79, 112
BspACI	CCGC	4 cut(s)	50, 253, 271, 289
BspANI	GGCC	2 cut(s)	243, 274
BspLI	GGNNCC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	66
BssMI	GATC	2 cut(s)	79, 112
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	241
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	82, 115
BstMBI	GATC	2 cut(s)	79, 112
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstNI	CCWGG	1 cut(s)	64
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	243, 274
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	203, 242
Csp6I	GTAC	2 cut(s)	17, 67
CviJI	RGCY	6 cut(s)	74, 132, 150, 239, 243, 274
CviKI_1	RGCY	6 cut(s)	74, 132, 150, 239, 243, 274
CviQI	GTAC	2 cut(s)	17, 67
DpnI	GATC	2 cut(s)	81, 114
DpnII	GATC	2 cut(s)	79, 112
EaeI	YGGCCR	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	62
FaiI	YATR	5 cut(s)	22, 36, 102, 153, 192
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	2 cut(s)	90, 258
GluI	GCNGC	1 cut(s)	272
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	243, 274
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
KpnI	GGTACC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	79, 112
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	8 cut(s)	49, 60, 76, 84, 219, 220, 225, 247
MaeI	CTAG	2 cut(s)	90, 258
MaeIII	GTNAC	2 cut(s)	92, 224
MalI	GATC	2 cut(s)	81, 114
MboI	GATC	2 cut(s)	79, 112
MboII	GAAGA	1 cut(s)	270
MnlI	CCTC	8 cut(s)	98, 132, 140, 167, 194, 211, 215, 260
MspA1I	CMGCKG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	240
NdeII	GATC	2 cut(s)	79, 112
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	2 cut(s)	203, 242
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	18, 68
RsaNI	GTAC	2 cut(s)	17, 67
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	2 cut(s)	79, 112
Sau96I	GGNCC	2 cut(s)	203, 242
ScaI	AGTACT	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	6 cut(s)	68, 76, 109, 178, 205, 226
SinI	GGWCC	1 cut(s)	203
SsiI	CCGC	4 cut(s)	50, 253, 271, 289
SspMI	CTAG	2 cut(s)	90, 258
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	1 cut(s)	274
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	203
XspI	CTAG	2 cut(s)	90, 258
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.