Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Reverse (-)

40396563 .. 40401482

Gene Structure 4920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG269600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTGGAAAGAGATACACGGCGTCCTCGTGGTTTTGGGTTTATTACATTTGGAGATCGACGGGCAATGGAAGATGCAATCCGGGAGATGCATGGACAGGAATTGGGTGCCCGCACCATCTCCGTGAACAAAGCCCAACCCAGAATGGGAGGGGAAGATTTAGACCATGGCTATAGAGGAGGAGGAGGAGGGGGAGGATACTCTTCTGGTGGCAGGAGAAGCTACGGAGGAGGTGGTGATAGATCTGTGGGCCAAGATGAATGCTTCAAGTGTGGGCGTACAGGACATTGGGCTCGAGACTGCCCTTCGGCTGGTGGTGGAAGAGGTGGAGGGGGAGGTTCATTCTCTTCACATTCTAGGTTCGGGGCTGGTGGGCGTGGGGATCGCTTTGGTGGAGATCATGATCGCTACATGGATGACCGTTATGATGGAGGGCGCTATGGAGACAGGGATCGTTTTGACAGCAGGGAGGACAAATATGGGAGCCGTGATCGCTATGTCAGTGACAGGTACCCAGCTGGTGATCGTTTTGCTAGTGACAGATATGGAGGTTCTGATCGCTATCCTCAAAATGGCTATGGCAAAGACAGAGGCTATGATAGAGATGGTGGAGCAAGAGGTGGCAGTGATAGATATGGAAGGGGAGGTCCAGCAAGAGATGAGGGAGGTTACCGTAGCAGGGCTGGCCCTTACGACCGCCCTAGCAGGGGAGGGCGGCCATCTTCCTTTGACCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

246

Amino Acids

26.81

Weight (kDa)

9.55

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 40	1.1e-07	RNA recognition motif
zf-CCHC	PF00098	87 - 103	2.1e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	510
AccB1I	GGYRCC	2 cut(s)	107, 510
AciI	CCGC	3 cut(s)	112, 697, 715
AclWI	GGATC	2 cut(s)	390, 459
AcoI	YGGCCR	1 cut(s)	716
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	2 cut(s)	280, 512
AfiI	CCNNNNNNNGG	6 cut(s)	146, 311, 572, 679, 706, 707
AgsI	TTSAA	1 cut(s)	268
AluBI	AGCT	2 cut(s)	222, 518
AluI	AGCT	2 cut(s)	222, 518
Alw26I	GTCTC	2 cut(s)	291, 438
AlwI	GGATC	2 cut(s)	390, 459
Ama87I	CYCGRG	1 cut(s)	294
AoxI	GGCC	3 cut(s)	250, 685, 716
Asp718I	GGTACC	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	3 cut(s)	250, 647, 686
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	248, 533
AvaI	CYCGRG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	2 cut(s)	107, 510
BanII	GRGCYC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	27
BccI	CCATC	4 cut(s)	125, 422, 599, 727
BceAI	ACGGC	2 cut(s)	35, 471
BciVI	GTATCC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	291, 438
BfaI	CTAG	3 cut(s)	357, 534, 702
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	1 cut(s)	716
BlsI	GCNGC	1 cut(s)	717
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	647
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	3 cut(s)	250, 647, 686
BmiI	GGNNCC	3 cut(s)	109, 485, 512
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	64, 78
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	2 cut(s)	402, 561
BsaHI	GRCGYC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 311, 572, 679, 706, 707
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	2 cut(s)	402, 561
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	2 cut(s)	402, 561
BseLI	CCNNNNNNNGG	6 cut(s)	146, 311, 572, 679, 706, 707
BseMI	GCAATG	1 cut(s)	72
BseRI	GAGGAG	5 cut(s)	192, 195, 198, 201, 243
BseSI	GKGCMC	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	514
Bsh1285I	CGRYCG	1 cut(s)	697
BshFI	GGCC	3 cut(s)	252, 687, 718
BshNI	GGYRCC	2 cut(s)	107, 510
BsiEI	CGRYCG	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	6 cut(s)	146, 311, 572, 679, 706, 707
BsmAI	GTCTC	2 cut(s)	291, 438
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	252, 687, 718
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	112, 295
Bsp143I	GATC	9 cut(s)	55, 242, 382, 397, 403, 451, 490, 523, 556
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	3 cut(s)	112, 697, 715
BspANI	GGCC	3 cut(s)	252, 687, 718
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	109, 485, 512
BspPI	GGATC	2 cut(s)	390, 459
BspT107I	GGYRCC	2 cut(s)	107, 510
BsrDI	GCAATG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	9 cut(s)	55, 242, 382, 397, 403, 451, 490, 523, 556
BssNI	GRCGYC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	3 cut(s)	422, 674, 734
Bst6I	CTCTTC	3 cut(s)	208, 316, 352
BstACI	GRCGYC	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	112, 685
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	1 cut(s)	421
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	9 cut(s)	58, 245, 385, 400, 406, 454, 493, 526, 559
BstMAI	GTCTC	2 cut(s)	291, 438
BstMBI	GATC	9 cut(s)	55, 242, 382, 397, 403, 451, 490, 523, 556
BstMCI	CGRYCG	1 cut(s)	697
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 492, 684
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	3 cut(s)	252, 687, 718
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	2 cut(s)	508, 631
Cac8I	GCNNGC	2 cut(s)	112, 685
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	3 cut(s)	250, 647, 686
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	279, 511
CviAII	CATG	4 cut(s)	92, 167, 401, 412
CviQI	GTAC	2 cut(s)	279, 511
DpnI	GATC	9 cut(s)	57, 244, 384, 399, 405, 453, 492, 525, 558
DpnII	GATC	9 cut(s)	55, 242, 382, 397, 403, 451, 490, 523, 556
EaeI	YGGCCR	1 cut(s)	716
Eam1104I	CTCTTC	3 cut(s)	208, 316, 352
EarI	CTCTTC	3 cut(s)	208, 316, 352
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	294
Eco91I	GGTNACC	1 cut(s)	668
EcoO65I	GGTNACC	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	4 cut(s)	95, 170, 404, 415
FatI	CATG	4 cut(s)	91, 166, 400, 411
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	1 cut(s)	716
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	716
FspBI	CTAG	3 cut(s)	357, 534, 702
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	1 cut(s)	716
GsaI	CCCAGC	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	252, 687, 718
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	438
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	4 cut(s)	95, 170, 404, 415
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	248, 533
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	2 cut(s)	296, 401
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	315, 633
HpyCH4III	ACNGT	3 cut(s)	422, 674, 734
HpyCH4V	TGCA	2 cut(s)	77, 91
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 492, 684
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	95, 170, 404, 415
HspAI	GCGC	1 cut(s)	436
KpnI	GGTACC	1 cut(s)	514
Kzo9I	GATC	9 cut(s)	55, 242, 382, 397, 403, 451, 490, 523, 556
LmnI	GCTCC	2 cut(s)	483, 611
LweI	GCATC	2 cut(s)	64, 78
MaeI	CTAG	3 cut(s)	357, 534, 702
MaeIII	GTNAC	4 cut(s)	503, 536, 668, 734
MalI	GATC	9 cut(s)	57, 244, 384, 399, 405, 453, 492, 525, 558
MboI	GATC	9 cut(s)	55, 242, 382, 397, 403, 451, 490, 523, 556
MboII	GAAGA	6 cut(s)	83, 167, 195, 333, 339, 714
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	112, 295
MluCI	AATT	1 cut(s)	101
Mph1103I	ATGCAT	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	219, 492, 684
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	9 cut(s)	55, 242, 382, 397, 403, 451, 490, 523, 556
NlaIII	CATG	4 cut(s)	95, 170, 404, 415
NlaIV	GGNNCC	3 cut(s)	109, 485, 512
NmuCI	GTSAC	2 cut(s)	503, 536
NsiI	ATGCAT	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	294
PagI	TCATGA	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PctI	GAATGC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	717
PspEI	GGTNACC	1 cut(s)	668
PspFI	CCCAGC	1 cut(s)	514
PspN4I	GGNNCC	3 cut(s)	109, 485, 512
PspPI	GGNCC	3 cut(s)	250, 647, 686
PsuI	RGATCY	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	280, 512
RsaNI	GTAC	2 cut(s)	279, 511
RseI	CAYNNNNRTG	1 cut(s)	122
SatI	GCNGC	1 cut(s)	716
Sau3AI	GATC	9 cut(s)	55, 242, 382, 397, 403, 451, 490, 523, 556
Sau96I	GGNCC	3 cut(s)	250, 647, 686
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	112, 295
SfaNI	GCATC	2 cut(s)	64, 78
SfcI	CTRYAG	1 cut(s)	172
Sfr274I	CTCGAG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	647
SlaI	CTCGAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	3 cut(s)	112, 697, 715
SspMI	CTAG	3 cut(s)	357, 534, 702
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	3 cut(s)	422, 674, 734
TaqI	TCGA	2 cut(s)	58, 295
TasI	AATT	1 cut(s)	101
TauI	GCSGC	1 cut(s)	718
TscAI	CASTG	2 cut(s)	508, 631
TseFI	GTSAC	2 cut(s)	503, 536
Tsp45I	GTSAC	2 cut(s)	503, 536
TspDTI	ATGAA	2 cut(s)	273, 330
TspGWI	ACGGA	2 cut(s)	112, 240
TspRI	CASTG	2 cut(s)	508, 631
VpaK11BI	GGWCC	1 cut(s)	647
XhoI	CTCGAG	1 cut(s)	294
XspI	CTAG	3 cut(s)	357, 534, 702
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.