Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Reverse (-)

24276281 .. 24280923

Gene Structure 4643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1168200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCAGGGAAGGAAGAGTACCGAATATTCGTGGGCGGGTTGTCGTGGGACGTCACGGAGCGTCAGATGGAGAGCGCTTTCCAACGTTTCGGCAAAGTTCTTGAAGCTCAGATCATGATGGAAAGAGATACAAACCGACCCCGAGGTTTTGGTTTTATTACATTTGGGGATCGGCGAGCAATGGAAGATGCAATCCGGGAGATGCATGGGCGGGAGCTTGGTGATCGCATAATCTCTGTGAACAAAGCTCAACCCAAAATGGGAGGGGGAGGAGCAGGAGAGGATTCTGACCATGGCTATAGAGCCGGTGGTTACTCGTCTGGTGACAGGAGAAACTATGGGGGAGGGGATAGACCTGTTGGACAAGATGAATGCTTCAAGTGTGGGCGACCAGGACATTGGGCCCGAGATTGCCCTTCGGCAGGTGGTGGAAGAGGTGGTGGGGGTTCATTTTCATCACATTCTAGGTTTGGGGCTGGTGGCCGTGGGGATCGTTTTGGTGGAGACCGAGGTCGCTACATGGATGATCGTTATGATGGAGGGCGCTATGGAGACAGGGACCGTTTTGACAGCAGAGATGACAAATATGGGAGCCGTGATCGCTATGTTAGTGACAGGTACCCAGCTGGTGATCGTTTTGCAAGTGACAGGTACGGTAGTTCTGATCGTTACCCTCAGAATGGTTATGGCAAAGATAGAGGCTATGATAGGGACGGTGGCCCAAGAGGAGGCGACAGATATGCTAGTGGAGGGCCTGCGAGAGACGACAATTACAGAAGCAGGCCAGGTCCTTATGACCGCCCTAGCAGGGGAGGGCGCCCATCGTCCTTTGACCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

281

Amino Acids

31.1

Weight (kDa)

9.28

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	8 - 68	3.5e-07	RNA recognition motif
RRM_1	PF00076	9 - 78	2.3e-19	RNA recognition motif
zf-CCHC	PF00098	124 - 140	1.4e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	413
AatII	GACGTC	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	413
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	2 cut(s)	618, 816
AciI	CCGC	3 cut(s)	36, 211, 799
AclI	AACGTT	1 cut(s)	85
AclWI	GGATC	2 cut(s)	177, 498
AcoI	YGGCCR	1 cut(s)	481
AcyI	GRCGYC	2 cut(s)	51, 817
AfaI	GTAC	3 cut(s)	20, 620, 653
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	6 cut(s)	260, 422, 680, 728, 808, 809
AgsI	TTSAA	2 cut(s)	104, 379
AjnI	CCWGG	2 cut(s)	391, 784
AluBI	AGCT	4 cut(s)	107, 217, 248, 626
AluI	AGCT	4 cut(s)	107, 217, 248, 626
Alw26I	GTCTC	3 cut(s)	498, 546, 756
AlwI	GGATC	2 cut(s)	177, 498
Ama87I	CYCGRG	2 cut(s)	141, 405
Aor51HI	AGCGCT	1 cut(s)	76
AoxI	GGCC	5 cut(s)	402, 481, 718, 752, 782
ApaI	GGGCCC	1 cut(s)	406
Asp718I	GGTACC	1 cut(s)	618
AspLEI	GCGC	3 cut(s)	77, 546, 819
AspS9I	GGNCC	6 cut(s)	402, 403, 559, 719, 752, 788
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	233, 335, 641
AvaI	CYCGRG	2 cut(s)	141, 405
AvaII	GGWCC	2 cut(s)	559, 788
BaeGI	GKGCMC	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	643, 676
BanI	GGYRCC	2 cut(s)	618, 816
BanII	GRGCYC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BccI	CCATC	4 cut(s)	61, 112, 530, 829
BceAI	ACGGC	2 cut(s)	468, 579
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	2 cut(s)	393, 786
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	3 cut(s)	498, 546, 756
BfaI	CTAG	3 cut(s)	465, 744, 804
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	3 cut(s)	78, 547, 820
BfuAI	ACCTGC	1 cut(s)	413
Bme1390I	CCNGG	3 cut(s)	197, 393, 786
Bme18I	GGWCC	2 cut(s)	559, 788
BmeT110I	CYCGRG	2 cut(s)	141, 405
BmgT120I	GGNCC	6 cut(s)	402, 403, 559, 719, 752, 788
BmiI	GGNNCC	5 cut(s)	404, 560, 593, 620, 818
BmrFI	CCNGG	3 cut(s)	197, 393, 786
BmsI	GCATC	2 cut(s)	178, 192
BoxI	GACNNNNGTC	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	197
BsaHI	GRCGYC	2 cut(s)	51, 817
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	4 cut(s)	142, 292, 484, 508
Bsc4I	CCNNNNNNNGG	6 cut(s)	260, 422, 680, 728, 808, 809
Bse118I	RCCGGY	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	393, 786
BseDI	CCNNGG	4 cut(s)	142, 292, 484, 508
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	6 cut(s)	260, 422, 680, 728, 808, 809
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	122, 689
BseRI	GAGGAG	2 cut(s)	285, 741
BseSI	GKGCMC	1 cut(s)	406
BseYI	CCCAGC	1 cut(s)	622
BshFI	GGCC	5 cut(s)	404, 483, 720, 754, 784
BshNI	GGYRCC	2 cut(s)	618, 816
BsiHKCI	CYCGRG	2 cut(s)	141, 405
BsiSI	CCGG	2 cut(s)	196, 306
BslFI	GGGAC	3 cut(s)	62, 572, 725
BslI	CCNNNNNNNGG	6 cut(s)	260, 422, 680, 728, 808, 809
BsmAI	GTCTC	3 cut(s)	498, 546, 756
BsmBI	CGTCTC	1 cut(s)	756
BsmFI	GGGAC	3 cut(s)	62, 572, 725
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	5 cut(s)	404, 483, 720, 754, 784
Bso31I	GGTCTC	1 cut(s)	498
BsoBI	CYCGRG	2 cut(s)	141, 405
Bsp120I	GGGCCC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	8 cut(s)	111, 169, 223, 490, 526, 598, 631, 664
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	3 cut(s)	36, 211, 799
BspANI	GGCC	5 cut(s)	404, 483, 720, 754, 784
BspCNI	CTCAG	2 cut(s)	121, 688
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	5 cut(s)	404, 560, 593, 620, 818
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	2 cut(s)	177, 498
BspT107I	GGYRCC	2 cut(s)	618, 816
BspTNI	GGTCTC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	4 cut(s)	142, 292, 484, 508
BssMI	GATC	8 cut(s)	111, 169, 223, 490, 526, 598, 631, 664
BssNI	GRCGYC	2 cut(s)	51, 817
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	393, 786
Bst4CI	ACNGT	4 cut(s)	563, 656, 716, 836
Bst6I	CTCTTC	2 cut(s)	9, 427
BstACI	GRCGYC	2 cut(s)	51, 817
BstC8I	GCNNGC	3 cut(s)	177, 756, 782
BstDEI	CTNAG	2 cut(s)	108, 675
BstDSI	CCRYGG	2 cut(s)	292, 484
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	529
BstH2I	RGCGCY	3 cut(s)	78, 547, 820
BstHHI	GCGC	3 cut(s)	77, 546, 819
BstKTI	GATC	8 cut(s)	114, 172, 226, 493, 529, 601, 634, 667
BstMAI	GTCTC	3 cut(s)	498, 546, 756
BstMBI	GATC	8 cut(s)	111, 169, 223, 490, 526, 598, 631, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	600
BstNI	CCWGG	2 cut(s)	393, 786
BstPAI	GACNNNNGTC	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	195, 391, 784
BstSFI	CTRYAG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	399
BsuRI	GGCC	5 cut(s)	404, 483, 720, 754, 784
BtgI	CCRYGG	2 cut(s)	292, 484
BtsCI	GGATG	1 cut(s)	529
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	3 cut(s)	177, 756, 782
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	3 cut(s)	77, 546, 819
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	6 cut(s)	402, 403, 559, 719, 752, 788
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	3 cut(s)	19, 619, 652
CviAII	CATG	4 cut(s)	115, 206, 293, 520
CviQI	GTAC	3 cut(s)	19, 619, 652
DdeI	CTNAG	2 cut(s)	108, 675
DinI	GGCGCC	1 cut(s)	818
DpnI	GATC	8 cut(s)	113, 171, 225, 492, 528, 600, 633, 666
DpnII	GATC	8 cut(s)	111, 169, 223, 490, 526, 598, 631, 664
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	2 cut(s)	9, 427
EarI	CTCTTC	2 cut(s)	9, 427
Eco130I	CCWWGG	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	406
Eco31I	GGTCTC	1 cut(s)	498
Eco47I	GGWCC	2 cut(s)	559, 788
Eco47III	AGCGCT	1 cut(s)	76
Eco88I	CYCGRG	2 cut(s)	141, 405
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoO109I	RGGNCCY	2 cut(s)	752, 788
EcoRII	CCWGG	2 cut(s)	391, 784
EcoT14I	CCWWGG	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	406
EgeI	GGCGCC	1 cut(s)	818
EheI	GGCGCC	1 cut(s)	818
ErhI	CCWWGG	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	4 cut(s)	118, 209, 296, 523
FaqI	GGGAC	3 cut(s)	62, 572, 725
FatI	CATG	4 cut(s)	114, 205, 292, 519
FauI	CCCGC	2 cut(s)	29, 204
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	406
FspBI	CTAG	3 cut(s)	465, 744, 804
GlaI	GCGC	3 cut(s)	76, 545, 818
GsaI	CCCAGC	1 cut(s)	626
HaeII	RGCGCY	3 cut(s)	78, 547, 820
HaeIII	GGCC	5 cut(s)	404, 483, 720, 754, 784
HapII	CCGG	2 cut(s)	196, 306
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	3 cut(s)	77, 546, 819
Hin1I	GRCGYC	2 cut(s)	51, 817
Hin1II	CATG	4 cut(s)	118, 209, 296, 523
Hin6I	GCGC	3 cut(s)	75, 544, 817
HinP1I	GCGC	3 cut(s)	75, 544, 817
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	2 cut(s)	196, 306
HphI	GGTGA	3 cut(s)	233, 335, 641
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	5 cut(s)	66, 111, 289, 664, 678
Hpy188III	TCNNGA	2 cut(s)	101, 115
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	4, 426
HpyCH4III	ACNGT	4 cut(s)	563, 656, 716, 836
HpyCH4IV	ACGT	2 cut(s)	51, 85
HpyCH4V	TGCA	3 cut(s)	191, 205, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	600
HpyF3I	CTNAG	2 cut(s)	108, 675
HpySE526I	ACGT	2 cut(s)	51, 85
Hsp92I	GRCGYC	2 cut(s)	51, 817
Hsp92II	CATG	4 cut(s)	118, 209, 296, 523
HspAI	GCGC	3 cut(s)	75, 544, 817
KasI	GGCGCC	1 cut(s)	816
KpnI	GGTACC	1 cut(s)	622
Kzo9I	GATC	8 cut(s)	111, 169, 223, 490, 526, 598, 631, 664
LmnI	GCTCC	4 cut(s)	58, 214, 272, 591
LweI	GCATC	2 cut(s)	178, 192
MaeI	CTAG	3 cut(s)	465, 744, 804
MaeII	ACGT	2 cut(s)	51, 85
MaeIII	GTNAC	7 cut(s)	52, 311, 323, 611, 644, 668, 836
MalI	GATC	8 cut(s)	113, 171, 225, 492, 528, 600, 633, 666
MboI	GATC	8 cut(s)	111, 169, 223, 490, 526, 598, 631, 664
MboII	GAAGA	3 cut(s)	26, 197, 444
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	1 cut(s)	769
Mly113I	GGCGCC	1 cut(s)	817
MmeI	TCCRAC	2 cut(s)	106, 340
Mph1103I	ATGCAT	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	2 cut(s)	196, 306
MspR9I	CCNGG	3 cut(s)	197, 393, 786
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	2 cut(s)	393, 786
MwoI	GCNNNNNNNGC	1 cut(s)	600
NarI	GGCGCC	1 cut(s)	817
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	8 cut(s)	111, 169, 223, 490, 526, 598, 631, 664
NlaIII	CATG	4 cut(s)	118, 209, 296, 523
NlaIV	GGNNCC	5 cut(s)	404, 560, 593, 620, 818
NmuCI	GTSAC	4 cut(s)	52, 323, 611, 644
NsiI	ATGCAT	1 cut(s)	207
PagI	TCATGA	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	413
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	195
PluTI	GGCGCC	1 cut(s)	820
PpuMI	RGGWCCY	1 cut(s)	788
PshAI	GACNNNNGTC	1 cut(s)	510
Psp1406I	AACGTT	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	788
Psp6I	CCWGG	2 cut(s)	391, 784
PspFI	CCCAGC	1 cut(s)	622
PspGI	CCWGG	2 cut(s)	391, 784
PspN4I	GGNNCC	5 cut(s)	404, 560, 593, 620, 818
PspOMI	GGGCCC	1 cut(s)	402
PspPI	GGNCC	6 cut(s)	402, 403, 559, 719, 752, 788
PspPPI	RGGWCCY	1 cut(s)	788
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	3 cut(s)	20, 620, 653
RsaNI	GTAC	3 cut(s)	19, 619, 652
Sau3AI	GATC	8 cut(s)	111, 169, 223, 490, 526, 598, 631, 664
Sau96I	GGNCC	6 cut(s)	402, 403, 559, 719, 752, 788
ScrFI	CCNGG	3 cut(s)	197, 393, 786
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	178, 192
SfcI	CTRYAG	1 cut(s)	298
SfoI	GGCGCC	1 cut(s)	818
SinI	GGWCC	2 cut(s)	559, 788
Sse9I	AATT	1 cut(s)	769
SsiI	CCGC	3 cut(s)	36, 211, 799
SspDI	GGCGCC	1 cut(s)	816
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	3 cut(s)	465, 744, 804
StyD4I	CCNGG	3 cut(s)	195, 391, 784
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	4 cut(s)	563, 656, 716, 836
TaiI	ACGT	2 cut(s)	54, 88
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	1 cut(s)	769
TfiI	GAWTC	1 cut(s)	284
TseFI	GTSAC	4 cut(s)	52, 323, 611, 644
Tsp45I	GTSAC	4 cut(s)	52, 323, 611, 644
TspDTI	ATGAA	3 cut(s)	384, 438, 444
TspGWI	ACGGA	1 cut(s)	71
VpaK11BI	GGWCC	2 cut(s)	559, 788
XagI	CCTNNNNNAGG	1 cut(s)	420
XspI	CTAG	3 cut(s)	465, 744, 804
ZraI	GACGTC	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.