Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Reverse (-)

15444027 .. 15448667

Gene Structure 4641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18520.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCTGGAAAGAGATACAAAGCGTCCTCGTGGTTTTGGTTTTATCACATTTGGAGATCGACGAGCAATGGAAGATGCAATCCGGGAGATGCATGGACAGGAATTGGGTTCCCGCACTATCTCTGTGAACAAAGCCCAACCCAGGATGGGAGGTGAAGATTCTGATCATGGCTATAGAGGAGGAGGAGGAGGGGGAGGATACTCTTCTGGTGGCAGGAGAAGCTATGGAGGAGGTGGTGATAGATCTGTGGGCCAAGATGAATGCTTCAAGTGTGGGCGTACAGGACATTGGGCTCGAGACTGCCCATCTGCTGGTGGTGGAAGAGGTGGAGGGGGAGGTTCATTCTCTTCACATTCTAGGTTTGGGGGAGGTGGGCGTGTGGATCGCTTTGGTGGAGATCATGATCGCTACATGGATGACCGTTATGATGGAGGGCGCTATGGAGATAGGGATCGTTTTGACAGCAGGGAGGACAAATATGGGAGCCGTGATCGCTATGTCAGTGACAGGTACCCAGCTGGTGATCGTTTCGCTAGTGACAGATATGGTGGTTCTGATCGTTACCCCCAAAATGGCTATGGAAAAGACAGAGGCTATGACAGGGATGGTGGAGTGAGAGGTGGCAGTGATAGATATGGAAGAGGAGGTCCAGCAAGAGATGAGGGAGGTTACCGTAGCAGGGCTGGCCCTTACGACCGCCCTAGCAGGGGAGGCCGCCCATCTTCTTTTGACCGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

247

Amino Acids

26.85

Weight (kDa)

9.53

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	19 - 59	4.1e-09	RNA recognition motif
zf-CCHC	PF00098	106 - 122	2.3e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	510
AccB1I	GGYRCC	1 cut(s)	510
AccB7I	CCANNNNNTGG	1 cut(s)	311
AciI	CCGC	4 cut(s)	112, 697, 715, 733
AclWI	GGATC	2 cut(s)	390, 459
AfaI	GTAC	2 cut(s)	280, 512
AfiI	CCNNNNNNNGG	7 cut(s)	141, 146, 311, 572, 679, 706, 707
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	2 cut(s)	222, 518
AluI	AGCT	2 cut(s)	222, 518
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	390, 459
Ama87I	CYCGRG	1 cut(s)	294
AoxI	GGCC	3 cut(s)	250, 685, 712
Asp718I	GGTACC	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	3 cut(s)	250, 647, 686
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	3 cut(s)	164, 248, 533
AvaI	CYCGRG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	27
BccI	CCATC	5 cut(s)	139, 313, 422, 599, 727
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	142
BciVI	GTATCC	1 cut(s)	191
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	3 cut(s)	357, 534, 702
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	1 cut(s)	715
BlsI	GCNGC	1 cut(s)	716
Bme1390I	CCNGG	2 cut(s)	83, 142
Bme18I	GGWCC	1 cut(s)	647
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	3 cut(s)	250, 647, 686
BmiI	GGNNCC	3 cut(s)	109, 485, 512
BmrFI	CCNGG	2 cut(s)	83, 142
BmsI	GCATC	2 cut(s)	64, 78
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	3 cut(s)	162, 402, 450
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	7 cut(s)	141, 146, 311, 572, 679, 706, 707
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	3 cut(s)	162, 402, 450
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	3 cut(s)	150, 421, 610
BseJI	GATNNNNATC	3 cut(s)	162, 402, 450
BseLI	CCNNNNNNNGG	7 cut(s)	141, 146, 311, 572, 679, 706, 707
BseMI	GCAATG	1 cut(s)	72
BseRI	GAGGAG	6 cut(s)	192, 195, 198, 201, 243, 657
BseYI	CCCAGC	1 cut(s)	514
Bsh1285I	CGRYCG	1 cut(s)	697
BshFI	GGCC	3 cut(s)	252, 687, 714
BshNI	GGYRCC	1 cut(s)	510
BsiEI	CGRYCG	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	7 cut(s)	141, 146, 311, 572, 679, 706, 707
BsmAI	GTCTC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	252, 687, 714
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	295
BspACI	CCGC	4 cut(s)	112, 697, 715, 733
BspANI	GGCC	3 cut(s)	252, 687, 714
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	109, 485, 512
BspPI	GGATC	2 cut(s)	390, 459
BspT107I	GGYRCC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	140
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	422, 674
Bst6I	CTCTTC	4 cut(s)	208, 316, 352, 634
BstC8I	GCNNGC	1 cut(s)	685
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	3 cut(s)	150, 421, 610
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstMAI	GTCTC	1 cut(s)	291
BstMCI	CGRYCG	1 cut(s)	697
BstMWI	GCNNNNNNNGC	4 cut(s)	219, 492, 684, 711
BstNI	CCWGG	1 cut(s)	142
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	81, 140
BstSFI	CTRYAG	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	3 cut(s)	252, 687, 714
BtsCI	GGATG	3 cut(s)	150, 421, 610
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	2 cut(s)	508, 631
Cac8I	GCNNGC	1 cut(s)	685
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	3 cut(s)	250, 647, 686
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	279, 511
CviAII	CATG	4 cut(s)	92, 167, 401, 412
CviQI	GTAC	2 cut(s)	279, 511
Eam1104I	CTCTTC	4 cut(s)	208, 316, 352, 634
EarI	CTCTTC	4 cut(s)	208, 316, 352, 634
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	294
Eco91I	GGTNACC	1 cut(s)	668
EcoO65I	GGTNACC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	4 cut(s)	95, 170, 404, 415
FatI	CATG	4 cut(s)	91, 166, 400, 411
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	715
FokI	GGATG	3 cut(s)	157, 428, 617
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	715
FspBI	CTAG	3 cut(s)	357, 534, 702
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	1 cut(s)	715
GsaI	CCCAGC	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	252, 687, 714
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	4 cut(s)	95, 170, 404, 415
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	3 cut(s)	164, 248, 533
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	163, 556
Hpy188III	TCNNGA	2 cut(s)	296, 401
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	63
HpyCH4III	ACNGT	2 cut(s)	422, 674
HpyCH4V	TGCA	2 cut(s)	77, 91
HpyF10VI	GCNNNNNNNGC	4 cut(s)	219, 492, 684, 711
Hsp92II	CATG	4 cut(s)	95, 170, 404, 415
HspAI	GCGC	1 cut(s)	436
KpnI	GGTACC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	483
LweI	GCATC	2 cut(s)	64, 78
MaeI	CTAG	3 cut(s)	357, 534, 702
MaeIII	GTNAC	4 cut(s)	503, 536, 560, 668
MboII	GAAGA	7 cut(s)	83, 167, 195, 333, 339, 651, 714
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	1 cut(s)	101
Mph1103I	ATGCAT	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	83, 142
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	4 cut(s)	219, 492, 684, 711
NciI	CCSGG	1 cut(s)	83
NlaIII	CATG	4 cut(s)	95, 170, 404, 415
NlaIV	GGNNCC	3 cut(s)	109, 485, 512
NmuCI	GTSAC	2 cut(s)	503, 536
NsiI	ATGCAT	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	294
PagI	TCATGA	1 cut(s)	400
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	140
PspEI	GGTNACC	1 cut(s)	668
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	3 cut(s)	109, 485, 512
PspPI	GGNCC	3 cut(s)	250, 647, 686
PsuI	RGATCY	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	280, 512
RsaNI	GTAC	2 cut(s)	279, 511
SatI	GCNGC	1 cut(s)	715
Sau96I	GGNCC	3 cut(s)	250, 647, 686
ScrFI	CCNGG	2 cut(s)	83, 142
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	64, 78
SfcI	CTRYAG	1 cut(s)	172
Sfr274I	CTCGAG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	647
SlaI	CTCGAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	4 cut(s)	112, 697, 715, 733
SspMI	CTAG	3 cut(s)	357, 534, 702
StyD4I	CCNGG	2 cut(s)	81, 140
TaaI	ACNGT	2 cut(s)	422, 674
TaqI	TCGA	2 cut(s)	58, 295
TasI	AATT	1 cut(s)	101
TauI	GCSGC	1 cut(s)	717
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	2 cut(s)	508, 631
TseFI	GTSAC	2 cut(s)	503, 536
Tsp45I	GTSAC	2 cut(s)	503, 536
TspDTI	ATGAA	2 cut(s)	273, 330
TspRI	CASTG	2 cut(s)	508, 631
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	294
XspI	CTAG	3 cut(s)	357, 534, 702
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.