Rorug01G0297200

Glycine-rich RNA-binding

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
41205781 .. 41266912
61132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0297200.1

Sequence Viewer

Length: 1404 bp
ATGTCAAATGTAACGAAAAGAGATCCTGCAGCTCAGTTCCTTATTGTAATCAGAAGCAAGGATACCATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGATAAATAGAAGAATGGAATTTGTATTCGCAACTCACAGTTTGGTAGCCATGAATCCAAATCCATACCAACCTATGGCACCTCCACCTCCATGGCCTCGAATGTTGCCGCCTAACCCTCCAATGATGCCTCCCAACGCTCCTATGGTGCCCCCCAACCCTCCGGTCACGAGCACTTTCTGGGAGACCGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATCAGAGATGGTAAGGGGTCTGATGATGCTTCTGTCAGCGGGTTTTCTGAGTTTTTGAAAGATAGGAAGATTGATTTGGAGGCCCAAGTGTTACAATCAGTGGAAGCTGCAAACTCTTTAATGGCTAAACTACGAGTTGAGCTTGAACCGTTTAGAGTGATCACACACAAAATGTGTCCCTGGGAGGAAAAATCTGCGGCTGTTCAATTATCCAATAAGATATGCAAGTCCAAGAGGAATAAACGGTGGAGGAAAAGAAAGAGGAAGCGCATTGCAGAGATTATTGCAAAGGAACGTGAAGGGTTTGATGAAGCTGATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGACAGTATTGATTGTTGAGAAATTGCAAGAGTTGCGCTCCATCAGGATTGAAAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACGAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGATGAGCAATCGAGGAAAACAACCGAGAATTTCAGACCTGACTCTATTAATCAAAGCAGTGCTAAAGGCGAGAGTAAGGAAAGTAAAGGCCCGACAATTCCAAGCACTAATGAAGGCAACTCTACTGCAGTCACTAACAAGGAATCTGGAAAACAAGTTCTACAGGGAGAGGGTTACAGTGGAGCTTATGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTATTATCATGGCAGCAATACTGATATGGGCACCCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGCCAGATACCAGGACACTGGATGCAACCTCCACCTCCTGCAGATGATATCTGGGCCTCCTACCTTCTGCAACCTAAATGA

Protein Analysis

467

Amino Acids

53.02

Weight (kDa)

8.85

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD7 PF16021 391 - 463 1.3e-10 Programmed cell death protein 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 184, 253, 1271
AccB7I CCANNNNNTGG 1 cut(s) 181
AciI CCGC 4 cut(s) 215, 294, 420, 578
AclWI GGATC 1 cut(s) 17
AcsI RAATTY 6 cut(s) 125, 319, 923, 1045, 1219, 1232
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 1 cut(s) 939
AfiI CCNNNNNNNGG 3 cut(s) 181, 913, 1282
AgsI TTSAA 5 cut(s) 439, 527, 587, 878, 932
AjnI CCWGG 3 cut(s) 560, 1315, 1333
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AloI GAACNNNNNNTCC 2 cut(s) 1158, 1190
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 3 cut(s) 284, 802, 821
AlwI GGATC 1 cut(s) 17
AoxI GGCC 5 cut(s) 200, 462, 895, 1105, 1377
ApeKI GCWGC 7 cut(s) 29, 86, 488, 944, 980, 995, 1254
ApoI RAATTY 6 cut(s) 125, 319, 923, 1045, 1219, 1232
AseI ATTAAT 1 cut(s) 1065
AspLEI GCGC 2 cut(s) 651, 864
AspS9I GGNCC 3 cut(s) 463, 1106, 1377
AsuHPI GGTGA 1 cut(s) 1297
BaeGI GKGCMC 2 cut(s) 258, 1274
BanI GGYRCC 3 cut(s) 184, 253, 1271
BarI GAAGNNNNNNTAC 2 cut(s) 46, 78
BauI CACGAG 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 7 cut(s) 41, 73, 475, 931, 982, 992, 1266
BccI CCATC 3 cut(s) 383, 751, 875
BciT130I CCWGG 3 cut(s) 562, 1317, 1335
BciVI GTATCC 1 cut(s) 55
BclI TGATCA 3 cut(s) 307, 381, 540
BcoDI GTCTC 3 cut(s) 284, 802, 821
BfaI CTAG 3 cut(s) 723, 812, 999
BfmI CTRYAG 5 cut(s) 27, 945, 1143, 1178, 1362
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 9 cut(s) 30, 87, 215, 489, 579, 945, 981, 996, 1255
BlsI GCNGC 9 cut(s) 31, 88, 216, 490, 580, 946, 982, 997, 1256
Bme1390I CCNGG 3 cut(s) 562, 1317, 1335
BmgT120I GGNCC 3 cut(s) 463, 1106, 1377
BmiI GGNNCC 3 cut(s) 186, 255, 1273
BmrFI CCNGG 3 cut(s) 562, 1317, 1335
BmsI GCATC 9 cut(s) 222, 360, 397, 973, 982, 994, 1198, 1291, 1335
BpiI GAAGAC 1 cut(s) 768
BplI GAGNNNNNCTC 2 cut(s) 848, 880
BpuEI CTTGAG 2 cut(s) 386, 845
BsaBI GATNNNNATC 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 3 cut(s) 197, 560, 561
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 913, 1282
Bse1I ACTGG 1 cut(s) 1346
Bse3DI GCAATG 3 cut(s) 357, 651, 1008
Bse8I GATNNNNATC 1 cut(s) 380
BseBI CCWGG 3 cut(s) 562, 1317, 1335
BseDI CCNNGG 3 cut(s) 197, 560, 561
BseGI GGATG 5 cut(s) 922, 997, 1009, 1306, 1350
BseJI GATNNNNATC 1 cut(s) 380
BseLI CCNNNNNNNGG 3 cut(s) 181, 913, 1282
BseMI GCAATG 3 cut(s) 357, 651, 1008
BseMII CTCAG 2 cut(s) 47, 420
BseNI ACTGG 1 cut(s) 1346
BseRI GAGGAG 3 cut(s) 968, 971, 974
BseSI GKGCMC 2 cut(s) 258, 1274
BseXI GCAGC 7 cut(s) 41, 73, 475, 931, 982, 992, 1266
BshFI GGCC 5 cut(s) 202, 464, 897, 1107, 1379
BshNI GGYRCC 3 cut(s) 184, 253, 1271
BsiHKAI GWGCWC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 3 cut(s) 181, 913, 1282
BsmAI GTCTC 3 cut(s) 284, 802, 821
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 5 cut(s) 202, 464, 897, 1107, 1379
Bso31I GGTCTC 1 cut(s) 284
Bsp1286I GDGCHC 3 cut(s) 258, 281, 1274
Bsp143I GATC 6 cut(s) 22, 77, 307, 381, 540, 697
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 4 cut(s) 215, 294, 420, 578
BspANI GGCC 5 cut(s) 202, 464, 897, 1107, 1379
BspCNI CTCAG 2 cut(s) 46, 421
BspLI GGNNCC 3 cut(s) 186, 255, 1273
BspMAI CTGCAG 4 cut(s) 31, 949, 1147, 1366
BspPI GGATC 1 cut(s) 17
BspT107I GGYRCC 3 cut(s) 184, 253, 1271
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 3 cut(s) 357, 651, 1008
BsrI ACTGG 1 cut(s) 1346
BssECI CCNNGG 3 cut(s) 197, 560, 561
BssMI GATC 6 cut(s) 22, 77, 307, 381, 540, 697
BssSI CACGAG 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 197
Bst2BI CACGAG 1 cut(s) 274
Bst2UI CCWGG 3 cut(s) 562, 1317, 1335
Bst4CI ACNGT 5 cut(s) 146, 531, 627, 832, 1196
Bst6I CTCTTC 2 cut(s) 792, 906
BstAPI GCANNNNNTGC 1 cut(s) 859
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 2 cut(s) 33, 429
BstDSI CCRYGG 1 cut(s) 197
BstENI CCTNNNNNAGG 1 cut(s) 1280
BstF5I GGATG 5 cut(s) 922, 997, 1009, 1306, 1350
BstHHI GCGC 2 cut(s) 651, 864
BstKTI GATC 6 cut(s) 25, 80, 310, 384, 543, 700
BstMAI GTCTC 3 cut(s) 284, 802, 821
BstMBI GATC 6 cut(s) 22, 77, 307, 381, 540, 697
BstMWI GCNNNNNNNGC 7 cut(s) 310, 361, 370, 859, 977, 1004, 1208
BstNI CCWGG 3 cut(s) 562, 1317, 1335
BstSCI CCNGG 3 cut(s) 560, 1315, 1333
BstSFI CTRYAG 5 cut(s) 27, 945, 1143, 1178, 1362
BstSLI GKGCMC 2 cut(s) 258, 1274
BstV1I GCAGC 7 cut(s) 41, 73, 475, 931, 982, 992, 1266
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 1 cut(s) 22
BstXI CCANNNNNNTGG 2 cut(s) 198, 1341
BstYI RGATCY 1 cut(s) 22
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 5 cut(s) 202, 464, 897, 1107, 1379
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 5 cut(s) 922, 997, 1009, 1306, 1350
BtsI GCAGTG 1 cut(s) 1081
BtsIMutI CAGTG 4 cut(s) 486, 1081, 1201, 1339
Cac8I GCNNGC 1 cut(s) 781
CfoI GCGC 2 cut(s) 651, 864
Cfr13I GGNCC 3 cut(s) 463, 1106, 1377
Csp6I GTAC 1 cut(s) 938
CviAII CATG 6 cut(s) 157, 198, 766, 988, 1250, 1296
CviQI GTAC 1 cut(s) 938
DdeI CTNAG 2 cut(s) 33, 429
DpnI GATC 6 cut(s) 24, 79, 309, 383, 542, 699
DpnII GATC 6 cut(s) 22, 77, 307, 381, 540, 697
Eam1104I CTCTTC 2 cut(s) 792, 906
EarI CTCTTC 2 cut(s) 792, 906
Eco130I CCWWGG 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 284
Eco32I GATATC 1 cut(s) 1372
Eco57I CTGAAG 1 cut(s) 335
EcoNI CCTNNNNNAGG 1 cut(s) 1280
EcoRII CCWGG 3 cut(s) 560, 1315, 1333
EcoRV GATATC 1 cut(s) 1372
EcoT14I CCWWGG 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 6 cut(s) 160, 201, 769, 991, 1253, 1299
FaqI GGGAC 1 cut(s) 543
FatI CATG 6 cut(s) 156, 197, 765, 987, 1249, 1295
FauI CCCGC 1 cut(s) 413
FbaI TGATCA 3 cut(s) 307, 381, 540
Fnu4HI GCNGC 9 cut(s) 30, 87, 215, 489, 579, 945, 981, 996, 1255
FokI GGATG 5 cut(s) 929, 1004, 1016, 1313, 1357
Fsp4HI GCNGC 9 cut(s) 30, 87, 215, 489, 579, 945, 981, 996, 1255
FspBI CTAG 3 cut(s) 723, 812, 999
GlaI GCGC 2 cut(s) 650, 863
GluI GCNGC 9 cut(s) 30, 87, 215, 489, 579, 945, 981, 996, 1255
HaeIII GGCC 5 cut(s) 202, 464, 897, 1107, 1379
HapII CCGG 1 cut(s) 269
HhaI GCGC 2 cut(s) 651, 864
Hin1II CATG 6 cut(s) 160, 201, 769, 991, 1253, 1299
Hin6I GCGC 2 cut(s) 649, 862
HinP1I GCGC 2 cut(s) 649, 862
HinfI GANTC 4 cut(s) 160, 815, 1058, 1160
HpaII CCGG 1 cut(s) 269
HphI GGTGA 1 cut(s) 1297
Hpy188I TCNGA 6 cut(s) 53, 386, 403, 430, 820, 1052
Hpy188III TCNNGA 5 cut(s) 274, 701, 871, 929, 1164
HpyAV CCTTC 3 cut(s) 674, 1124, 1397
HpyCH4III ACNGT 5 cut(s) 146, 531, 627, 832, 1196
HpyCH4IV ACGT 1 cut(s) 676
HpyF10VI GCNNNNNNNGC 7 cut(s) 310, 361, 370, 859, 977, 1004, 1208
HpyF3I CTNAG 2 cut(s) 33, 429
HpySE526I ACGT 1 cut(s) 676
Hsp92II CATG 6 cut(s) 160, 201, 769, 991, 1253, 1299
HspAI GCGC 2 cut(s) 649, 862
Ksp22I TGATCA 3 cut(s) 307, 381, 540
Kzo9I GATC 6 cut(s) 22, 77, 307, 381, 540, 697
LmnI GCTCC 4 cut(s) 250, 869, 961, 1199
Lsp1109I GCAGC 7 cut(s) 41, 73, 475, 931, 982, 992, 1266
LweI GCATC 9 cut(s) 222, 360, 397, 973, 982, 994, 1198, 1291, 1335
MaeI CTAG 3 cut(s) 723, 812, 999
MaeII ACGT 1 cut(s) 676
MaeIII GTNAC 5 cut(s) 10, 271, 471, 1147, 1190
MalI GATC 6 cut(s) 24, 79, 309, 383, 542, 699
MboI GATC 6 cut(s) 22, 77, 307, 381, 540, 697
MboII GAAGA 9 cut(s) 129, 328, 460, 773, 781, 809, 898, 923, 1302
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 3 cut(s) 258, 281, 1274
MlyI GAGTC 1 cut(s) 1052
MseI TTAA 3 cut(s) 500, 786, 1065
MslI CAYNNNNRTG 1 cut(s) 196
MspA1I CMGCKG 3 cut(s) 313, 420, 983
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 3 cut(s) 562, 1317, 1335
MvaI CCWGG 3 cut(s) 562, 1317, 1335
MwoI GCNNNNNNNGC 7 cut(s) 310, 361, 370, 859, 977, 1004, 1208
NcoI CCATGG 1 cut(s) 197
NdeII GATC 6 cut(s) 22, 77, 307, 381, 540, 697
NlaIII CATG 6 cut(s) 160, 201, 769, 991, 1253, 1299
NlaIV GGNNCC 3 cut(s) 186, 255, 1273
NmuCI GTSAC 2 cut(s) 271, 1147
PasI CCCWGGG 1 cut(s) 561
PfeI GAWTC 3 cut(s) 160, 815, 1160
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 9 cut(s) 31, 88, 216, 490, 580, 946, 982, 997, 1256
PleI GAGTC 1 cut(s) 1052
PpsI GAGTC 1 cut(s) 1052
PshBI ATTAAT 1 cut(s) 1065
Psp6I CCWGG 3 cut(s) 560, 1315, 1333
PspGI CCWGG 3 cut(s) 560, 1315, 1333
PspN4I GGNNCC 3 cut(s) 186, 255, 1273
PspPI GGNCC 3 cut(s) 463, 1106, 1377
PstI CTGCAG 4 cut(s) 31, 949, 1147, 1366
PsuI RGATCY 1 cut(s) 22
PvuII CAGCTG 2 cut(s) 313, 983
RsaI GTAC 1 cut(s) 939
RsaNI GTAC 1 cut(s) 938
RseI CAYNNNNRTG 1 cut(s) 196
SaqAI TTAA 3 cut(s) 500, 786, 1065
SatI GCNGC 9 cut(s) 30, 87, 215, 489, 579, 945, 981, 996, 1255
Sau3AI GATC 6 cut(s) 22, 77, 307, 381, 540, 697
Sau96I GGNCC 3 cut(s) 463, 1106, 1377
SchI GAGTC 1 cut(s) 1052
ScrFI CCNGG 3 cut(s) 562, 1317, 1335
SduI GDGCHC 3 cut(s) 258, 281, 1274
SfaNI GCATC 9 cut(s) 222, 360, 397, 973, 982, 994, 1198, 1291, 1335
SfcI CTRYAG 5 cut(s) 27, 945, 1143, 1178, 1362
SmiMI CAYNNNNRTG 1 cut(s) 196
SmlI CTYRAG 2 cut(s) 365, 824
SmoI CTYRAG 2 cut(s) 365, 824
SsiI CCGC 4 cut(s) 215, 294, 420, 578
SspMI CTAG 3 cut(s) 723, 812, 999
StyD4I CCNGG 3 cut(s) 560, 1315, 1333
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 5 cut(s) 146, 531, 627, 832, 1196
TaiI ACGT 1 cut(s) 679
TaqI TCGA 3 cut(s) 205, 700, 1028
TauI GCSGC 2 cut(s) 217, 581
TfiI GAWTC 3 cut(s) 160, 815, 1160
Tru1I TTAA 3 cut(s) 500, 786, 1065
Tru9I TTAA 3 cut(s) 500, 786, 1065
TscAI CASTG 4 cut(s) 486, 1081, 1201, 1346
TseFI GTSAC 2 cut(s) 271, 1147
TseI GCWGC 7 cut(s) 29, 86, 488, 944, 980, 995, 1254
Tsp45I GTSAC 2 cut(s) 271, 1147
TspDTI ATGAA 6 cut(s) 173, 705, 726, 782, 899, 1143
TspRI CASTG 4 cut(s) 486, 1081, 1201, 1346
Van91I CCANNNNNTGG 1 cut(s) 181
VspI ATTAAT 1 cut(s) 1065
XagI CCTNNNNNAGG 1 cut(s) 1280
XapI RAATTY 6 cut(s) 125, 319, 923, 1045, 1219, 1232
XcmI CCANNNNNNNNNTGG 2 cut(s) 247, 754
XspI CTAG 3 cut(s) 723, 812, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.