RchiOBHm_Chr3g0470591

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
16515780 .. 16517879
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43637

Sequence Viewer

Length: 1803 bp
ATGGTGGCGGCAGAGTTTAGTTCTGGTGCTTTTGGCTCCACGGAAATGAGAAGCTTTGGGTTGCAAGTACTCCGTGGACGATGGTTCATGTTGTTTGCTTCAATGCTAATCCTCTCCGTGGCCGGAGCAACCTACATGTTTGCTCTCTACTCCAATGAAGTCAAAATCTCTTTGGGCTATGACCAAACAACACTCAATCTCCTAAGCTTCTTCAAGGACTTGGGAGGCAATGTCGGAATCATAGCTGGTCTAGTTAACGAAGTCACAGCTCCATGGGTGGTGCTTTTAATCGGTTCAGTCATGAACTTTTTCGGTTACTTCATGATCTGGCTAGCTGTCACTGGTCGAACCTCGAAACCACGCGTGTGGCAGATGTGTTTGTACATTTGCTTAGGTGCAAATTCTCAGACTTTCTCAAACACAGGAGCTGTGGTGAGCTGTGTGAAGAACTTTCCTTCTAGTAGAGGAAGTGTTTTGGGGCTTTTGAAGGGACTTGTTGGTTTGAGTGGTGCTATTATCACGCAGCTCTACCGTGCTTTCTATGGAGATCACTCCAAGGCTTTGATTTTACTAATTGCTTGGCTTCCGGCTGCTGTTTCGATTGTGTTTCTTCCCATCATTCGTTTGATCAAGATCGTTAGACAGCCAAATGAGCTCAGGATTTTCTACAATCTTCTTTACTGTACTCTCGGACTAGCTGGATTTCTCATGGCTTTGATTATCATGCAGCACAAGCTGAATTTTTCTAGAATTTGTTACATTGGAGGTGCTTCAGTTGTGCTTATACTACTCTTTCTTCCAATCGCGGTTGTTATAATCGAAGAATTCAAGCTCTGGAAGACGAAAATCAAAGCCGTGAATGAGCCAATTCAGCTCAAAGTAGTAGCTGAAAATCCAGCTCCTGCTGAATTAGTACCTGTTGCAACTCCACAAACCCAGCAGAAGCATAAATCTTGCTTGCAAACCGTCTTCAAGCCGCCCGTTAGAGGTGAGGATTACTCGATTTTGCAAGCACTTTTTAGCATTGACATGTTGATCTTGATCATTGTTACAATCTGTGGTGTTGGAGGTACCTTAACCGCAATTGATAATCTCGGTCAGATTGGGAGCTCATTAGGCTACCCAACTGACAGCATTAGCACTTTCATATCTCTGGTAAGCATATGGAACTACCTTGGAAGAGTTACTTCTGGCTTTTCTTCAGAAGCCCTTTTGAAGAAGTACAAATTCCCAAGACCACTTATGCTCACTCTAGTGCTTCTCTTATCATGTGTTGGCCATCTCCTAATAGCGTTCGGGGTCCCCAACTCTCTCTACTTTTCTTCTGTGATTATTGGGTTCTGTTTTGGAGCTCAATGGCCATTGATTTTTGCCATCATTTCTGAACTCTTTGGCCTCAAGTACTATGCCACCTTAATCAATTTTGGTGGTGCTGCTAGCCCTATTGGGGCTTATATCCTCAATGTGAAAGTGGCTGGAAACTTGTATGATGCAGCGGCTTTGAAGCAACTACAGGCTTTGGGGAAGACTAGGAAAGAAGGACAAGACTTAACTTGTGTAGGAGTGGAATGTTACAAATTGGCTTTCATCATAATTGCTGCTGTGGCATTGTTTGGGAGCCTTGTTTCATTTATTTTGGTGATCAGAACAAGAAAATTCTACCAAAGTGATATTTACAAGAAGTTCAGAGAGGAAGCTGAGGCAGCGGAAGCAGATTTCACTCGAGGTGTTGTTGGTGCCGGTACTTCAAGCTCATCAAAAGCAGCACAAGGACCAGAGGCAGACTTGGATTCAAAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

600

Amino Acids

65.28

Weight (kDa)

9.25

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 27 - 272 1.2e-87 Nodulin-like
NFD4_C PF23262 339 - 554 1.7e-17 NFD4, C-terminal domain
MFS_1 PF07690 349 - 551 2.6e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 815
Acc65I GGTACC 1 cut(s) 1070
AccB1I GGYRCC 2 cut(s) 1070, 1736
AccII CGCG 2 cut(s) 363, 806
AciI CCGC 6 cut(s) 8, 806, 977, 1080, 1496, 1706
AcoI YGGCCR 3 cut(s) 120, 1276, 1358
AcsI RAATTY 6 cut(s) 400, 739, 750, 824, 1226, 1655
AcuI CTGAAG 2 cut(s) 756, 1185
AfaI GTAC 8 cut(s) 69, 383, 685, 915, 1072, 1223, 1403, 1744
AfiI CCNNNNNNNGG 3 cut(s) 118, 986, 1447
AflIII ACRYGT 3 cut(s) 135, 361, 1029
AgsI TTSAA 9 cut(s) 102, 214, 487, 829, 973, 1216, 1504, 1749, 1794
AleI CACNNNNGTG 2 cut(s) 364, 1253
Alw21I GWGCWC 3 cut(s) 657, 1112, 1354
AlwNI CAGNNNCTG 2 cut(s) 428, 902
Ama87I CYCGRG 1 cut(s) 1722
AoxI GGCC 4 cut(s) 120, 1276, 1358, 1393
ApeKI GCWGC 8 cut(s) 523, 590, 727, 1433, 1493, 1598, 1703, 1763
ApoI RAATTY 6 cut(s) 400, 739, 750, 824, 1226, 1655
Asp700I GAANNNNTTC 1 cut(s) 308
Asp718I GGTACC 1 cut(s) 1070
AspS9I GGNCC 2 cut(s) 1300, 1772
AsuHPI GGTGA 3 cut(s) 445, 1001, 1651
AsuNHI GCTAGC 2 cut(s) 331, 1436
AvaI CYCGRG 1 cut(s) 1722
AvaII GGWCC 2 cut(s) 1300, 1772
BalI TGGCCA 2 cut(s) 1278, 1360
BanI GGYRCC 2 cut(s) 1070, 1736
BanII GRGCYC 3 cut(s) 657, 1112, 1354
BbsI GAAGAC 3 cut(s) 845, 961, 1532
Bbv12I GWGCWC 3 cut(s) 657, 1112, 1354
BbvCI CCTCAGC 1 cut(s) 1698
BbvI GCAGC 8 cut(s) 535, 577, 739, 1420, 1505, 1585, 1715, 1775
BccI CCATC 4 cut(s) 75, 623, 1287, 1382
BceAI ACGGC 1 cut(s) 839
BclI TGATCA 3 cut(s) 627, 1041, 1641
BfaI CTAG 8 cut(s) 251, 332, 459, 695, 747, 1253, 1437, 1530
BfmI CTRYAG 1 cut(s) 1511
BmcAI AGTACT 2 cut(s) 69, 1403
Bme18I GGWCC 2 cut(s) 1300, 1772
BmeT110I CYCGRG 1 cut(s) 1722
BmgT120I GGNCC 2 cut(s) 1300, 1772
BmiI GGNNCC 6 cut(s) 37, 1072, 1301, 1302, 1619, 1738
BmsI GCATC 1 cut(s) 1480
BmtI GCTAGC 2 cut(s) 335, 1440
BpiI GAAGAC 3 cut(s) 845, 961, 1532
BplI GAGNNNNNCTC 2 cut(s) 983, 1015
Bpu10I CCTNAGC 4 cut(s) 203, 391, 656, 1698
BpuEI CTTGAG 1 cut(s) 1382
BsaBI GATNNNNATC 2 cut(s) 632, 1040
BsaJI CCNNGG 6 cut(s) 39, 73, 117, 272, 555, 1174
BsaXI ACNNNNNCTCC 6 cut(s) 183, 213, 216, 246, 417, 447
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 986, 1447
Bse118I RCCGGY 1 cut(s) 1739
Bse1I ACTGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 235
Bse8I GATNNNNATC 2 cut(s) 632, 1040
BseDI CCNNGG 6 cut(s) 39, 73, 117, 272, 555, 1174
BseJI GATNNNNATC 2 cut(s) 632, 1040
BseLI CCNNNNNNNGG 3 cut(s) 118, 986, 1447
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 3 cut(s) 419, 670, 1689
BseNI ACTGG 1 cut(s) 346
BseXI GCAGC 8 cut(s) 535, 577, 739, 1420, 1505, 1585, 1715, 1775
BseYI CCCAGC 1 cut(s) 936
Bsh1236I CGCG 2 cut(s) 363, 806
BshFI GGCC 4 cut(s) 122, 1278, 1360, 1395
BshNI GGYRCC 2 cut(s) 1070, 1736
BsiHKAI GWGCWC 3 cut(s) 657, 1112, 1354
BsiHKCI CYCGRG 1 cut(s) 1722
BsiSI CCGG 3 cut(s) 123, 587, 1740
BslFI GGGAC 2 cut(s) 504, 1286
BslI CCNNNNNNNGG 3 cut(s) 118, 986, 1447
BsmFI GGGAC 2 cut(s) 504, 1286
BsnI GGCC 4 cut(s) 122, 1278, 1360, 1395
BsoBI CYCGRG 1 cut(s) 1722
Bsp1286I GDGCHC 3 cut(s) 657, 1112, 1354
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 7 cut(s) 324, 547, 627, 633, 1035, 1041, 1641
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 6 cut(s) 8, 806, 977, 1080, 1496, 1706
BspANI GGCC 4 cut(s) 122, 1278, 1360, 1395
BspCNI CTCAG 3 cut(s) 418, 669, 1690
BspFNI CGCG 2 cut(s) 363, 806
BspHI TCATGA 2 cut(s) 300, 321
BspLI GGNNCC 6 cut(s) 37, 1072, 1301, 1302, 1619, 1738
BspOI GCTAGC 2 cut(s) 335, 1440
BspT107I GGYRCC 2 cut(s) 1070, 1736
BsrDI GCAATG 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 1739
BsrGI TGTACA 1 cut(s) 381
BsrI ACTGG 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 1739
BssECI CCNNGG 6 cut(s) 39, 73, 117, 272, 555, 1174
BssMI GATC 7 cut(s) 324, 547, 627, 633, 1035, 1041, 1641
BssT1I CCWWGG 3 cut(s) 272, 555, 1174
Bst4CI ACNGT 3 cut(s) 533, 683, 967
Bst6I CTCTTC 1 cut(s) 1174
BstAUI TGTACA 1 cut(s) 381
BstC8I GCNNGC 4 cut(s) 333, 959, 1011, 1438
BstDEI CTNAG 5 cut(s) 203, 391, 405, 656, 1698
BstDSI CCRYGG 4 cut(s) 39, 73, 117, 272
BstFNI CGCG 2 cut(s) 363, 806
BstKTI GATC 7 cut(s) 327, 550, 630, 636, 1038, 1044, 1644
BstMBI GATC 7 cut(s) 324, 547, 627, 633, 1035, 1041, 1641
BstMWI GCNNNNNNNGC 7 cut(s) 652, 733, 871, 1116, 1604, 1703, 1709
BstNSI RCATGY 2 cut(s) 139, 1033
BstSFI CTRYAG 1 cut(s) 1511
BstUI CGCG 2 cut(s) 363, 806
BstV1I GCAGC 8 cut(s) 535, 577, 739, 1420, 1505, 1585, 1715, 1775
BstV2I GAAGAC 3 cut(s) 845, 961, 1532
BstXI CCANNNNNNTGG 1 cut(s) 366
BsuRI GGCC 4 cut(s) 122, 1278, 1360, 1395
BtgI CCRYGG 4 cut(s) 39, 73, 117, 272
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 4 cut(s) 333, 959, 1011, 1438
CaiI CAGNNNCTG 2 cut(s) 428, 902
CciI TCATGA 2 cut(s) 300, 321
Cfr10I RCCGGY 1 cut(s) 1739
Cfr13I GGNCC 2 cut(s) 1300, 1772
Csp6I GTAC 8 cut(s) 68, 382, 684, 914, 1071, 1222, 1402, 1743
CspCI CAANNNNNGTGG 2 cut(s) 1408, 1443
CviAII CATG 9 cut(s) 88, 136, 273, 301, 322, 709, 724, 1030, 1269
CviQI GTAC 8 cut(s) 68, 382, 684, 914, 1071, 1222, 1402, 1743
DdeI CTNAG 5 cut(s) 203, 391, 405, 656, 1698
DpnI GATC 7 cut(s) 326, 549, 629, 635, 1037, 1043, 1643
DpnII GATC 7 cut(s) 324, 547, 627, 633, 1035, 1041, 1641
EaeI YGGCCR 3 cut(s) 120, 1276, 1358
Eam1104I CTCTTC 1 cut(s) 1174
EarI CTCTTC 1 cut(s) 1174
Ecl136II GAGCTC 3 cut(s) 655, 1110, 1352
Eco130I CCWWGG 3 cut(s) 272, 555, 1174
Eco24I GRGCYC 3 cut(s) 657, 1112, 1354
Eco47I GGWCC 2 cut(s) 1300, 1772
Eco53kI GAGCTC 3 cut(s) 655, 1110, 1352
Eco57I CTGAAG 2 cut(s) 756, 1185
Eco88I CYCGRG 1 cut(s) 1722
EcoICRI GAGCTC 3 cut(s) 655, 1110, 1352
EcoO109I RGGNCCY 1 cut(s) 1300
EcoRI GAATTC 1 cut(s) 824
EcoT14I CCWWGG 3 cut(s) 272, 555, 1174
EcoT38I GRGCYC 3 cut(s) 657, 1112, 1354
ErhI CCWWGG 3 cut(s) 272, 555, 1174
FaeI CATG 9 cut(s) 91, 139, 276, 304, 325, 712, 727, 1033, 1272
FalI AAGNNNNNCTT 2 cut(s) 1171, 1203
FaqI GGGAC 2 cut(s) 504, 1286
FatI CATG 9 cut(s) 87, 135, 272, 300, 321, 708, 723, 1029, 1268
FauNDI CATATG 1 cut(s) 1163
FbaI TGATCA 3 cut(s) 627, 1041, 1641
FriOI GRGCYC 3 cut(s) 657, 1112, 1354
FspBI CTAG 8 cut(s) 251, 332, 459, 695, 747, 1253, 1437, 1530
GsaI CCCAGC 1 cut(s) 940
HaeIII GGCC 4 cut(s) 122, 1278, 1360, 1395
HapII CCGG 3 cut(s) 123, 587, 1740
Hin1II CATG 9 cut(s) 91, 139, 276, 304, 325, 712, 727, 1033, 1272
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 2 cut(s) 52, 205
HinfI GANTC 2 cut(s) 237, 1790
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 3 cut(s) 123, 587, 1740
HphI GGTGA 3 cut(s) 445, 1001, 1651
Hpy166II GTNNAC 2 cut(s) 77, 256
Hpy188I TCNGA 8 cut(s) 236, 408, 692, 1101, 1204, 1384, 1646, 1688
Hpy188III TCNNGA 7 cut(s) 301, 322, 631, 658, 747, 835, 1039
Hpy8I GTNNAC 2 cut(s) 77, 256
HpyAV CCTTC 3 cut(s) 465, 481, 1532
HpyCH4III ACNGT 3 cut(s) 533, 683, 967
HpyCH4V TGCA 7 cut(s) 64, 398, 727, 923, 961, 1009, 1493
HpyF10VI GCNNNNNNNGC 7 cut(s) 652, 733, 871, 1116, 1604, 1703, 1709
HpyF3I CTNAG 5 cut(s) 203, 391, 405, 656, 1698
Hsp92II CATG 9 cut(s) 91, 139, 276, 304, 325, 712, 727, 1033, 1272
KflI GGGWCCC 1 cut(s) 1300
KpnI GGTACC 1 cut(s) 1074
Ksp22I TGATCA 3 cut(s) 627, 1041, 1641
KspAI GTTAAC 1 cut(s) 256
Kzo9I GATC 7 cut(s) 324, 547, 627, 633, 1035, 1041, 1641
LmnI GCTCC 8 cut(s) 41, 125, 274, 425, 904, 1107, 1349, 1617
Lsp1109I GCAGC 8 cut(s) 535, 577, 739, 1420, 1505, 1585, 1715, 1775
LweI GCATC 1 cut(s) 1480
MaeI CTAG 8 cut(s) 251, 332, 459, 695, 747, 1253, 1437, 1530
MaeIII GTNAC 7 cut(s) 262, 314, 337, 755, 1048, 1183, 1571
MalI GATC 7 cut(s) 326, 549, 629, 635, 1037, 1043, 1643
MboI GATC 7 cut(s) 324, 547, 627, 633, 1035, 1041, 1641
MfeI CAATTG 1 cut(s) 1083
MhlI GDGCHC 3 cut(s) 657, 1112, 1354
MlsI TGGCCA 2 cut(s) 1278, 1360
MluI ACGCGT 1 cut(s) 361
MluNI TGGCCA 2 cut(s) 1278, 1360
MmeI TCCRAC 2 cut(s) 214, 1045
Mox20I TGGCCA 2 cut(s) 1278, 1360
MroXI GAANNNNTTC 1 cut(s) 308
MscI TGGCCA 2 cut(s) 1278, 1360
MseI TTAA 5 cut(s) 255, 287, 1076, 1415, 1550
MslI CAYNNNNRTG 4 cut(s) 44, 364, 1028, 1253
Msp20I TGGCCA 2 cut(s) 1278, 1360
MspA1I CMGCKG 2 cut(s) 1496, 1706
MspI CCGG 3 cut(s) 123, 587, 1740
MunI CAATTG 1 cut(s) 1083
MvnI CGCG 2 cut(s) 363, 806
MwoI GCNNNNNNNGC 7 cut(s) 652, 733, 871, 1116, 1604, 1703, 1709
NcoI CCATGG 1 cut(s) 272
NdeI CATATG 1 cut(s) 1163
NdeII GATC 7 cut(s) 324, 547, 627, 633, 1035, 1041, 1641
NheI GCTAGC 2 cut(s) 331, 1436
NlaIII CATG 9 cut(s) 91, 139, 276, 304, 325, 712, 727, 1033, 1272
NlaIV GGNNCC 6 cut(s) 37, 1072, 1301, 1302, 1619, 1738
NmuCI GTSAC 2 cut(s) 262, 337
NspI RCATGY 2 cut(s) 139, 1033
OliI CACNNNNGTG 2 cut(s) 364, 1253
PaeR7I CTCGAG 1 cut(s) 1722
PagI TCATGA 2 cut(s) 300, 321
PciI ACATGT 2 cut(s) 135, 1029
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 237, 1790
PpuMI RGGWCCY 1 cut(s) 1300
PscI ACATGT 2 cut(s) 135, 1029
PsiI TTATAA 1 cut(s) 815
Psp124BI GAGCTC 3 cut(s) 657, 1112, 1354
Psp5II RGGWCCY 1 cut(s) 1300
PspFI CCCAGC 1 cut(s) 936
PspN4I GGNNCC 6 cut(s) 37, 1072, 1301, 1302, 1619, 1738
PspPI GGNCC 2 cut(s) 1300, 1772
PspPPI RGGWCCY 1 cut(s) 1300
PspXI VCTCGAGB 1 cut(s) 1722
PstNI CAGNNNCTG 2 cut(s) 428, 902
RsaI GTAC 8 cut(s) 69, 383, 685, 915, 1072, 1223, 1403, 1744
RsaNI GTAC 8 cut(s) 68, 382, 684, 914, 1071, 1222, 1402, 1743
RseI CAYNNNNRTG 4 cut(s) 44, 364, 1028, 1253
SacI GAGCTC 3 cut(s) 657, 1112, 1354
SaqAI TTAA 5 cut(s) 255, 287, 1076, 1415, 1550
Sau3AI GATC 7 cut(s) 324, 547, 627, 633, 1035, 1041, 1641
Sau96I GGNCC 2 cut(s) 1300, 1772
ScaI AGTACT 2 cut(s) 69, 1403
SduI GDGCHC 3 cut(s) 657, 1112, 1354
SfaNI GCATC 1 cut(s) 1480
SfcI CTRYAG 1 cut(s) 1511
Sfr274I CTCGAG 1 cut(s) 1722
SinI GGWCC 2 cut(s) 1300, 1772
SlaI CTCGAG 1 cut(s) 1722
SmiMI CAYNNNNRTG 4 cut(s) 44, 364, 1028, 1253
SmlI CTYRAG 2 cut(s) 1397, 1722
SmoI CTYRAG 2 cut(s) 1397, 1722
SsiI CCGC 6 cut(s) 8, 806, 977, 1080, 1496, 1706
SspMI CTAG 8 cut(s) 251, 332, 459, 695, 747, 1253, 1437, 1530
SstI GAGCTC 3 cut(s) 657, 1112, 1354
StyI CCWWGG 3 cut(s) 272, 555, 1174
TaaI ACNGT 3 cut(s) 533, 683, 967
TaqI TCGA 6 cut(s) 346, 353, 599, 819, 1001, 1723
TaqII GACCGA 1 cut(s) 1085
TatI WGTACW 5 cut(s) 67, 381, 683, 1221, 1401
TauI GCSGC 3 cut(s) 11, 979, 1499
TfiI GAWTC 2 cut(s) 237, 1790
Tru1I TTAA 5 cut(s) 255, 287, 1076, 1415, 1550
Tru9I TTAA 5 cut(s) 255, 287, 1076, 1415, 1550
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 2 cut(s) 262, 337
TseI GCWGC 8 cut(s) 523, 590, 727, 1433, 1493, 1598, 1703, 1763
Tsp45I GTSAC 2 cut(s) 262, 337
TspDTI ATGAA 7 cut(s) 76, 171, 310, 317, 1135, 1576, 1617
TspGWI ACGGA 3 cut(s) 56, 62, 106
TspRI CASTG 1 cut(s) 346
VpaK11BI GGWCC 2 cut(s) 1300, 1772
XapI RAATTY 6 cut(s) 400, 739, 750, 824, 1226, 1655
XbaI TCTAGA 1 cut(s) 746
XceI RCATGY 2 cut(s) 139, 1033
XhoI CTCGAG 1 cut(s) 1722
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 8 cut(s) 251, 332, 459, 695, 747, 1253, 1437, 1530
ZrmI AGTACT 2 cut(s) 69, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.