FvH4_6g16630

Nodulin-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
10540186 .. 10542442
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16630.t1

Sequence Viewer

Length: 1803 bp
ATGGTGGTGGCAGAGTTTAGTTCTGGTGCTTTTGGCTCCAAGGAAATGAGAAGCTTTGGTTTGCAAGTACTCCATGGACGATGGTTCATGCTGTTTGCTTCCATGCTAATCCTCTCTGTGGCTGGAGCAACTTACATATTTGGTCTCTACTCCAATGTCATAAAAACCTCACTAGGTTATGACCAAACGACACTCAATCTCCTAAGCTTCTTCAAGGACTTGGGAGGCAATGTTGGAATCATAGCCGGTCTAGTTAACGAAGTCACAGGTCCATGGGTGGTGCTCTTAATCGGTTCAGTCATGAACTTCTTCGGATACTTCATGATCTGGTTAGCTGTCACAGGTCGAACCTCGAAACCACGCGTGTGGCAGATGTGTTTGTACATTTGCGTAGGTGCAAATTCTCAGACGTTCTCAAACACAGGAGCTGTAGTGAGCTGTGTGAAGAACTTTCCTTCTAGTAGAGGAAGTGTTTTGGGGCTTTTGAAGGGACTTGTTGGTTTGAGTGGTGCTATCATCACACAGCTCTACAATGCTTTCTATGGTAAAGATTCTAAGGCTTTGATTTTACTGATTGCTTGGCTTCCAGCTGCTGTTTCCATTGTGTTTCTTCCGATCGTTCGTTTGATCAAGACCGTCAGACAGCCGAATGAGCTCAGGATTTTCTACAATCTTCTCTACGTTACTCTTGGCCTAGCTGGGTTCCTCATGGCTTTGATTATCATGCAGCACAATCTGAAGTTTTCTAGAATGTGTTACATCGGAAGTGCTTCAGTCGTGCTTATGCTCCTCTTTCTTCCAATCGTGGTTGTTATAATCGAAGAGTTCAAGCTCTGGAAGACAAAAATCAAAGCAGTGAATGAGCCAATTCAGCTCAAAGTAGTAGCTGAAAATCCAGCTCCTGCTGAATTAGTACCTGTTGCAACTCCACAAACCCAGCAGAAGCATAATTCTTGCTTCCAAACTGTCTTCAAGCCGCCCGTTAGAGGTGAGGATTATACAATCTTGCAAGCACTTTTTAGCATTGACATGTTGATCTTGTTCATTGCTACAATCTGTGGTGTTGGAGGCACTTTAACCGCGATCGATAATCTCGGTCAGATTGGAAACTCATTAGGCTACCCAACTGATAGCATTAGCACCTTCATATCTCTGGTTAGCATATGGAACTACCTTGGAAGAGTCACTTCTGGCTTTTCTTCAGAAGTCCTTTTGAAGAAGTACAAATTCCCAAGACCACTTATGCTCACTCTAGTGCTTCTCTTAGCATGTGTTGGCCATCTCCTAATCGCGTTCGGTGTCCCCAACTCTCTCTACTTTTCTTCTGTGATTATTGGGTTCTGTTTTGGAGCTCAATGGCCATTGATATTCGCCATCATTTCCGAACTCTTTGGCCTCAAGTACTATGCCACTTTGATCAATTTTGGTGGTGCTGCTAGTCCTCTGGGGGCTTACATCCTCAATGTGAAAGTGGCTGGGAACCTGTATGATGCAGCGGCTTTGAAGCAACTAAAGGCTTTAGGGAAGACTAGAGAAGCAGGAATGGACCTGACATGTCAAGGAGTGGAGTGTTACAGATTGGCTTTCATTATAATTGCTGCAGTGGCATTGTTTGGGAGCCTTGTTTCATTTATTTTGGTTATCAGAACAAGAAAATTCTACCAAAGTGATATTTACAAGAAGTACAGTGAGGAAGCTGAGGCAGCCGAAGAGGATTTCACTATAGGTACTGTTGCTGCCGATACTTCAAGCTCATCTAAAGCAGCACAAGGACCAGAGGCAGACTCGGATTCAAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

601

Amino Acids

65.36

Weight (kDa)

9.12

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 27 - 272 6.5e-89 Nodulin-like
NFD4_C PF23262 339 - 554 4e-18 NFD4, C-terminal domain
MFS_1 PF07690 366 - 550 3.3e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 815, 1592
AccII CGCG 3 cut(s) 363, 1082, 1292
AciI CCGC 3 cut(s) 977, 1080, 1496
AcoI YGGCCR 2 cut(s) 1276, 1358
AcsI RAATTY 3 cut(s) 400, 1226, 1655
AcuI CTGAAG 3 cut(s) 756, 758, 1185
AfaI GTAC 7 cut(s) 69, 383, 915, 1223, 1403, 1685, 1729
AfiI CCNNNNNNNGG 2 cut(s) 118, 986
AflIII ACRYGT 3 cut(s) 361, 1029, 1553
AgsI TTSAA 8 cut(s) 214, 487, 829, 973, 1216, 1504, 1749, 1794
AleI CACNNNNGTG 2 cut(s) 364, 1253
Alw21I GWGCWC 3 cut(s) 285, 657, 1354
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 3 cut(s) 428, 593, 902
AoxI GGCC 4 cut(s) 691, 1276, 1358, 1393
ApeKI GCWGC 8 cut(s) 590, 727, 1433, 1493, 1598, 1703, 1736, 1763
ApoI RAATTY 3 cut(s) 400, 1226, 1655
Asp700I GAANNNNTTC 2 cut(s) 308, 769
AspS9I GGNCC 3 cut(s) 269, 1546, 1772
AsuHPI GGTGA 1 cut(s) 1001
AvaII GGWCC 3 cut(s) 269, 1546, 1772
BalI TGGCCA 2 cut(s) 1278, 1360
BanII GRGCYC 2 cut(s) 657, 1354
BbsI GAAGAC 3 cut(s) 845, 961, 1532
Bbv12I GWGCWC 3 cut(s) 285, 657, 1354
BbvCI CCTCAGC 1 cut(s) 1698
BbvI GCAGC 8 cut(s) 577, 739, 1420, 1505, 1585, 1715, 1723, 1775
BccI CCATC 3 cut(s) 75, 1287, 1382
BciVI GTATCC 1 cut(s) 308
BclI TGATCA 2 cut(s) 627, 1416
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 8 cut(s) 173, 251, 459, 695, 747, 1253, 1437, 1530
BfmI CTRYAG 3 cut(s) 429, 1599, 1722
BfuI GTATCC 1 cut(s) 308
BmcAI AGTACT 2 cut(s) 69, 1403
Bme18I GGWCC 3 cut(s) 269, 1546, 1772
BmgT120I GGNCC 3 cut(s) 269, 1546, 1772
BmiI GGNNCC 4 cut(s) 37, 704, 1481, 1619
BmsI GCATC 1 cut(s) 1480
BpiI GAAGAC 3 cut(s) 845, 961, 1532
BplI GAGNNNNNCTC 2 cut(s) 1769, 1801
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 3 cut(s) 203, 656, 1698
BpuEI CTTGAG 1 cut(s) 1382
Bsa29I ATCGAT 1 cut(s) 1086
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 4 cut(s) 39, 73, 272, 1174
BsaXI ACNNNNNCTCC 6 cut(s) 183, 213, 216, 246, 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 986
Bse118I RCCGGY 1 cut(s) 245
Bse3DI GCAATG 2 cut(s) 235, 1044
BseCI ATCGAT 1 cut(s) 1086
BseDI CCNNGG 4 cut(s) 39, 73, 272, 1174
BseGI GGATG 1 cut(s) 1455
BseLI CCNNNNNNNGG 2 cut(s) 118, 986
BseMI GCAATG 2 cut(s) 235, 1044
BseMII CTCAG 3 cut(s) 419, 670, 1689
BseRI GAGGAG 1 cut(s) 779
BseXI GCAGC 8 cut(s) 577, 739, 1420, 1505, 1585, 1715, 1723, 1775
BseYI CCCAGC 3 cut(s) 698, 936, 1475
Bsh1236I CGCG 3 cut(s) 363, 1082, 1292
Bsh1285I CGRYCG 2 cut(s) 618, 1086
BshFI GGCC 4 cut(s) 693, 1278, 1360, 1395
BshVI ATCGAT 1 cut(s) 1086
BsiEI CGRYCG 2 cut(s) 618, 1086
BsiHKAI GWGCWC 3 cut(s) 285, 657, 1354
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 2 cut(s) 504, 1286
BslI CCNNNNNNNGG 2 cut(s) 118, 986
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 2 cut(s) 504, 1286
BsnI GGCC 4 cut(s) 693, 1278, 1360, 1395
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 3 cut(s) 285, 657, 1354
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 6 cut(s) 324, 615, 627, 1035, 1083, 1416
Bsp19I CCATGG 2 cut(s) 73, 272
BspACI CCGC 3 cut(s) 977, 1080, 1496
BspANI GGCC 4 cut(s) 693, 1278, 1360, 1395
BspCNI CTCAG 3 cut(s) 418, 669, 1690
BspDI ATCGAT 1 cut(s) 1086
BspFNI CGCG 3 cut(s) 363, 1082, 1292
BspHI TCATGA 2 cut(s) 300, 321
BspLI GGNNCC 4 cut(s) 37, 704, 1481, 1619
BspMAI CTGCAG 1 cut(s) 1603
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 235, 1044
BsrFI RCCGGY 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 39, 73, 272, 1174
BssMI GATC 6 cut(s) 324, 615, 627, 1035, 1083, 1416
BssT1I CCWWGG 4 cut(s) 39, 73, 272, 1174
Bst4CI ACNGT 4 cut(s) 637, 967, 1688, 1732
Bst6I CTCTTC 3 cut(s) 816, 1174, 1704
BstAUI TGTACA 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 1011
BstDEI CTNAG 6 cut(s) 203, 405, 555, 656, 1264, 1698
BstDSI CCRYGG 2 cut(s) 73, 272
BstF5I GGATG 1 cut(s) 1455
BstFNI CGCG 3 cut(s) 363, 1082, 1292
BstKTI GATC 6 cut(s) 327, 618, 630, 1038, 1086, 1419
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 6 cut(s) 324, 615, 627, 1035, 1083, 1416
BstMCI CGRYCG 2 cut(s) 618, 1086
BstMWI GCNNNNNNNGC 4 cut(s) 652, 871, 1604, 1703
BstNSI RCATGY 3 cut(s) 1033, 1272, 1557
BstSFI CTRYAG 3 cut(s) 429, 1599, 1722
BstUI CGCG 3 cut(s) 363, 1082, 1292
BstV1I GCAGC 8 cut(s) 577, 739, 1420, 1505, 1585, 1715, 1723, 1775
BstV2I GAAGAC 3 cut(s) 845, 961, 1532
BstXI CCANNNNNNTGG 1 cut(s) 366
Bsu15I ATCGAT 1 cut(s) 1086
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 4 cut(s) 693, 1278, 1360, 1395
BsuTUI ATCGAT 1 cut(s) 1086
BtgI CCRYGG 2 cut(s) 73, 272
BtsCI GGATG 1 cut(s) 1455
BtsI GCAGTG 2 cut(s) 861, 1608
BtsIMutI CAGTG 3 cut(s) 861, 1608, 1693
Cac8I GCNNGC 1 cut(s) 1011
CaiI CAGNNNCTG 3 cut(s) 428, 593, 902
CciI TCATGA 2 cut(s) 300, 321
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 3 cut(s) 269, 1546, 1772
ClaI ATCGAT 1 cut(s) 1086
Csp6I GTAC 7 cut(s) 68, 382, 914, 1222, 1402, 1684, 1728
CspCI CAANNNNNGTGG 2 cut(s) 1408, 1443
CviQI GTAC 7 cut(s) 68, 382, 914, 1222, 1402, 1684, 1728
DdeI CTNAG 6 cut(s) 203, 405, 555, 656, 1264, 1698
DpnI GATC 6 cut(s) 326, 617, 629, 1037, 1085, 1418
DpnII GATC 6 cut(s) 324, 615, 627, 1035, 1083, 1416
EaeI YGGCCR 2 cut(s) 1276, 1358
Eam1104I CTCTTC 3 cut(s) 816, 1174, 1704
EarI CTCTTC 3 cut(s) 816, 1174, 1704
Ecl136II GAGCTC 2 cut(s) 655, 1352
Eco130I CCWWGG 4 cut(s) 39, 73, 272, 1174
Eco24I GRGCYC 2 cut(s) 657, 1354
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 3 cut(s) 269, 1546, 1772
Eco53kI GAGCTC 2 cut(s) 655, 1352
Eco57I CTGAAG 3 cut(s) 756, 758, 1185
EcoICRI GAGCTC 2 cut(s) 655, 1352
EcoT14I CCWWGG 4 cut(s) 39, 73, 272, 1174
EcoT38I GRGCYC 2 cut(s) 657, 1354
ErhI CCWWGG 4 cut(s) 39, 73, 272, 1174
FalI AAGNNNNNCTT 2 cut(s) 1171, 1203
FaqI GGGAC 2 cut(s) 504, 1286
FauNDI CATATG 1 cut(s) 1163
FbaI TGATCA 2 cut(s) 627, 1416
FokI GGATG 1 cut(s) 1442
FriOI GRGCYC 2 cut(s) 657, 1354
FspBI CTAG 8 cut(s) 173, 251, 459, 695, 747, 1253, 1437, 1530
GsaI CCCAGC 3 cut(s) 702, 940, 1479
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 4 cut(s) 693, 1278, 1360, 1395
HapII CCGG 1 cut(s) 246
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 2 cut(s) 52, 205
HinfI GANTC 5 cut(s) 237, 551, 1182, 1784, 1790
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 1 cut(s) 246
HphI GGTGA 1 cut(s) 1001
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 6 cut(s) 301, 322, 631, 658, 747, 835
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 3 cut(s) 465, 481, 1153
HpyCH4III ACNGT 4 cut(s) 637, 967, 1688, 1732
HpyCH4IV ACGT 2 cut(s) 410, 681
HpyCH4V TGCA 7 cut(s) 64, 398, 727, 923, 1009, 1493, 1601
HpyF10VI GCNNNNNNNGC 4 cut(s) 652, 871, 1604, 1703
HpyF3I CTNAG 6 cut(s) 203, 405, 555, 656, 1264, 1698
HpySE526I ACGT 2 cut(s) 410, 681
Ksp22I TGATCA 2 cut(s) 627, 1416
KspAI GTTAAC 1 cut(s) 256
Kzo9I GATC 6 cut(s) 324, 615, 627, 1035, 1083, 1416
LmnI GCTCC 7 cut(s) 41, 125, 425, 792, 904, 1349, 1617
Lsp1109I GCAGC 8 cut(s) 577, 739, 1420, 1505, 1585, 1715, 1723, 1775
LweI GCATC 1 cut(s) 1480
MaeI CTAG 8 cut(s) 173, 251, 459, 695, 747, 1253, 1437, 1530
MaeII ACGT 2 cut(s) 410, 681
MaeIII GTNAC 6 cut(s) 262, 337, 682, 755, 1183, 1571
MalI GATC 6 cut(s) 326, 617, 629, 1037, 1085, 1418
MboI GATC 6 cut(s) 324, 615, 627, 1035, 1083, 1416
MhlI GDGCHC 3 cut(s) 285, 657, 1354
MlsI TGGCCA 2 cut(s) 1278, 1360
MluCI AATT 8 cut(s) 400, 867, 908, 949, 1226, 1420, 1593, 1655
MluI ACGCGT 1 cut(s) 361
MluNI TGGCCA 2 cut(s) 1278, 1360
MlyI GAGTC 2 cut(s) 1191, 1778
MmeI TCCRAC 2 cut(s) 214, 1045
Mox20I TGGCCA 2 cut(s) 1278, 1360
MroXI GAANNNNTTC 2 cut(s) 308, 769
MscI TGGCCA 2 cut(s) 1278, 1360
MseI TTAA 3 cut(s) 255, 287, 1076
MslI CAYNNNNRTG 3 cut(s) 364, 1028, 1253
Msp20I TGGCCA 2 cut(s) 1278, 1360
MspA1I CMGCKG 2 cut(s) 590, 1496
MspI CCGG 1 cut(s) 246
MvnI CGCG 3 cut(s) 363, 1082, 1292
MwoI GCNNNNNNNGC 4 cut(s) 652, 871, 1604, 1703
NcoI CCATGG 2 cut(s) 73, 272
NdeI CATATG 1 cut(s) 1163
NdeII GATC 6 cut(s) 324, 615, 627, 1035, 1083, 1416
NlaIV GGNNCC 4 cut(s) 37, 704, 1481, 1619
NmuCI GTSAC 3 cut(s) 262, 337, 1183
NspI RCATGY 3 cut(s) 1033, 1272, 1557
OliI CACNNNNGTG 2 cut(s) 364, 1253
PagI TCATGA 2 cut(s) 300, 321
PciI ACATGT 2 cut(s) 1029, 1553
PdmI GAANNNNTTC 2 cut(s) 308, 769
PfeI GAWTC 3 cut(s) 237, 551, 1790
Ple19I CGATCG 2 cut(s) 618, 1086
PleI GAGTC 2 cut(s) 1190, 1778
PpsI GAGTC 2 cut(s) 1190, 1778
PscI ACATGT 2 cut(s) 1029, 1553
PsiI TTATAA 2 cut(s) 815, 1592
Psp124BI GAGCTC 2 cut(s) 657, 1354
PspFI CCCAGC 3 cut(s) 698, 936, 1475
PspN4I GGNNCC 4 cut(s) 37, 704, 1481, 1619
PspPI GGNCC 3 cut(s) 269, 1546, 1772
PstI CTGCAG 1 cut(s) 1603
PstNI CAGNNNCTG 3 cut(s) 428, 593, 902
PvuI CGATCG 2 cut(s) 618, 1086
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 7 cut(s) 69, 383, 915, 1223, 1403, 1685, 1729
RsaNI GTAC 7 cut(s) 68, 382, 914, 1222, 1402, 1684, 1728
RseI CAYNNNNRTG 3 cut(s) 364, 1028, 1253
SacI GAGCTC 2 cut(s) 657, 1354
SaqAI TTAA 3 cut(s) 255, 287, 1076
Sau3AI GATC 6 cut(s) 324, 615, 627, 1035, 1083, 1416
Sau96I GGNCC 3 cut(s) 269, 1546, 1772
ScaI AGTACT 2 cut(s) 69, 1403
SchI GAGTC 2 cut(s) 1191, 1778
SduI GDGCHC 3 cut(s) 285, 657, 1354
SfaNI GCATC 1 cut(s) 1480
SfcI CTRYAG 3 cut(s) 429, 1599, 1722
SinI GGWCC 3 cut(s) 269, 1546, 1772
SmiMI CAYNNNNRTG 3 cut(s) 364, 1028, 1253
SmlI CTYRAG 1 cut(s) 1397
SmoI CTYRAG 1 cut(s) 1397
Sse9I AATT 8 cut(s) 400, 867, 908, 949, 1226, 1420, 1593, 1655
SsiI CCGC 3 cut(s) 977, 1080, 1496
SspMI CTAG 8 cut(s) 173, 251, 459, 695, 747, 1253, 1437, 1530
SstI GAGCTC 2 cut(s) 657, 1354
StyI CCWWGG 4 cut(s) 39, 73, 272, 1174
TaaI ACNGT 4 cut(s) 637, 967, 1688, 1732
TaiI ACGT 2 cut(s) 413, 684
TaqI TCGA 4 cut(s) 346, 353, 819, 1086
TaqII GACCGA 1 cut(s) 1085
TasI AATT 8 cut(s) 400, 867, 908, 949, 1226, 1420, 1593, 1655
TatI WGTACW 5 cut(s) 67, 381, 1221, 1401, 1683
TauI GCSGC 2 cut(s) 979, 1499
TfiI GAWTC 3 cut(s) 237, 551, 1790
Tru1I TTAA 3 cut(s) 255, 287, 1076
Tru9I TTAA 3 cut(s) 255, 287, 1076
TscAI CASTG 3 cut(s) 861, 1608, 1693
TseFI GTSAC 3 cut(s) 262, 337, 1183
TseI GCWGC 8 cut(s) 590, 727, 1433, 1493, 1598, 1703, 1736, 1763
Tsp45I GTSAC 3 cut(s) 262, 337, 1183
TspDTI ATGAA 7 cut(s) 76, 310, 317, 1033, 1135, 1576, 1617
TspRI CASTG 3 cut(s) 861, 1608, 1693
VpaK11BI GGWCC 3 cut(s) 269, 1546, 1772
XapI RAATTY 3 cut(s) 400, 1226, 1655
XbaI TCTAGA 1 cut(s) 746
XceI RCATGY 3 cut(s) 1033, 1272, 1557
XmnI GAANNNNTTC 2 cut(s) 308, 769
XspI CTAG 8 cut(s) 173, 251, 459, 695, 747, 1253, 1437, 1530
ZrmI AGTACT 2 cut(s) 69, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.