Rmu_co8175752.1_g000001

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8175752.1
OG0002588
Physical Location & Seq
Reverse (-)
2 .. 679
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8175752.1_g000001.1.cds

Sequence Viewer

Length: 678 bp
gaacggtgacgtcaaaatagtcactgaaaagcccatccctgctgccgtctcaaccgataaacaattagtggatgaagctcctgagtccaccgcggaacctacccaatcttgttggaaaacttgttttcagccaccaaatagaggggaggactacacaattctccaagctctattcagcattgacatgctcatactattcatggcgtgcatatgtggtgttgggggcacattgaccgcaattgacaatttgggtcagattgggacttcgttgggatatgccacccgcagcaggagcactttcgtgtccctagtcagcatatggaattatctcggtcgagttgttgccggattctactctgaattcttactaaaacgatacaaattccctcgtcctctcattctaaccctaaccctcttgctctcttgcgttggtcatctcctcattgccttcaatgttaaaaatggcctctacctggcctcggtcataatagggttttgcttcggcgcgcaatggcctttgctcttcgccataatctccgagctcttcgggctcaagtactactcaaccttgtacaatttcggttcagccgcgagccccgtcggcttgtacctgctcaacgtgaaactcaccggtcatgtgtacgataaggaggcgaggaagcaattggcggcttcagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Nodulin-like

Protein Analysis

226

Amino Acids

24.73

Weight (kDa)

8.5

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 619
AccII CGCG 3 cut(s) 93, 507, 591
AciI CCGC 6 cut(s) 91, 93, 235, 284, 589, 669
AcsI RAATTY 2 cut(s) 360, 381
AcuI CTGAAG 1 cut(s) 658
AcyI GRCGYC 1 cut(s) 10
AfaI GTAC 4 cut(s) 558, 573, 609, 642
AfiI CCNNNNNNNGG 4 cut(s) 141, 289, 473, 479
AgeI ACCGGT 1 cut(s) 630
AgsI TTSAA 1 cut(s) 452
AjnI CCWGG 1 cut(s) 472
AleI CACNNNNGTG 1 cut(s) 300
AluBI AGCT 3 cut(s) 78, 168, 542
AluI AGCT 3 cut(s) 78, 168, 542
Alw21I GWGCWC 2 cut(s) 297, 544
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 3 cut(s) 464, 475, 513
ApeKI GCWGC 2 cut(s) 42, 286
ApoI RAATTY 2 cut(s) 360, 381
AsiGI ACCGGT 1 cut(s) 630
AspLEI GCGC 2 cut(s) 507, 509
AsuHPI GGTGA 2 cut(s) 18, 620
BaeGI GKGCMC 1 cut(s) 228
BanII GRGCYC 3 cut(s) 544, 553, 597
Bbv12I GWGCWC 2 cut(s) 297, 544
BbvI GCAGC 2 cut(s) 29, 298
BccI CCATC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 619
BglI GCCNNNNNGGC 1 cut(s) 601
BisI GCNGC 4 cut(s) 43, 287, 589, 670
BlsI GCNGC 4 cut(s) 44, 288, 590, 671
BmcAI AGTACT 1 cut(s) 558
Bme1390I CCNGG 1 cut(s) 474
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 91, 478
BsaWI WCCGGW 1 cut(s) 630
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 289, 473, 479
Bse118I RCCGGY 1 cut(s) 630
Bse3DI GCAATG 2 cut(s) 442, 516
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 91, 478
BseGI GGATG 2 cut(s) 34, 77
BseLI CCNNNNNNNGG 4 cut(s) 141, 289, 473, 479
BseMI GCAATG 2 cut(s) 442, 516
BseMII CTCAG 1 cut(s) 73
BsePI GCGCGC 1 cut(s) 505
BseRI GAGGAG 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 2 cut(s) 29, 298
Bsh1236I CGCG 3 cut(s) 93, 507, 591
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 3 cut(s) 466, 477, 515
BshTI ACCGGT 1 cut(s) 630
BsiEI CGRYCG 1 cut(s) 335
BsiHKAI GWGCWC 2 cut(s) 297, 544
BsiSI CCGG 2 cut(s) 346, 631
BslFI GGGAC 2 cut(s) 275, 290
BslI CCNNNNNNNGG 4 cut(s) 141, 289, 473, 479
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 275, 290
BsnI GGCC 3 cut(s) 466, 477, 515
Bsp1286I GDGCHC 5 cut(s) 228, 297, 544, 553, 597
Bsp1407I TGTACA 1 cut(s) 571
BspACI CCGC 6 cut(s) 91, 93, 235, 284, 589, 669
BspANI GGCC 3 cut(s) 466, 477, 515
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 3 cut(s) 93, 507, 591
BspLI GGNNCC 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 619
BspQI GCTCTTC 2 cut(s) 528, 549
BsrDI GCAATG 2 cut(s) 442, 516
BsrFI RCCGGY 1 cut(s) 630
BsrGI TGTACA 1 cut(s) 571
BssAI RCCGGY 1 cut(s) 630
BssECI CCNNGG 2 cut(s) 91, 478
BssHII GCGCGC 1 cut(s) 505
BssNI GRCGYC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 6
Bst6I CTCTTC 2 cut(s) 528, 549
BstACI GRCGYC 1 cut(s) 10
BstAUI TGTACA 1 cut(s) 571
BstC8I GCNNGC 3 cut(s) 206, 507, 593
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 34, 77
BstFNI CGCG 3 cut(s) 93, 507, 591
BstHHI GCGC 2 cut(s) 507, 509
BstMAI GTCTC 1 cut(s) 53
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 3 cut(s) 292, 548, 601
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 472
BstSLI GKGCMC 1 cut(s) 228
BstUI CGCG 3 cut(s) 93, 507, 591
BstV1I GCAGC 2 cut(s) 29, 298
BsuRI GGCC 3 cut(s) 466, 477, 515
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 34, 77
BtsIMutI CAGTG 1 cut(s) 22
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 3 cut(s) 206, 507, 593
CfoI GCGC 2 cut(s) 507, 509
Cfr10I RCCGGY 1 cut(s) 630
Cfr42I CCGCGG 1 cut(s) 94
Csp6I GTAC 4 cut(s) 557, 572, 608, 641
CspAI ACCGGT 1 cut(s) 630
CviAII CATG 3 cut(s) 185, 200, 636
CviQI GTAC 4 cut(s) 557, 572, 608, 641
DdeI CTNAG 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 528, 549
EarI CTCTTC 2 cut(s) 528, 549
Ecl136II GAGCTC 1 cut(s) 542
Eco24I GRGCYC 3 cut(s) 544, 553, 597
Eco53kI GAGCTC 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 658
EcoICRI GAGCTC 1 cut(s) 542
EcoRI GAATTC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 472
EcoT38I GRGCYC 3 cut(s) 544, 553, 597
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 3 cut(s) 188, 203, 639
FaqI GGGAC 2 cut(s) 275, 290
FatI CATG 3 cut(s) 184, 199, 635
FauI CCCGC 1 cut(s) 291
FauNDI CATATG 2 cut(s) 210, 318
Fnu4HI GCNGC 4 cut(s) 43, 287, 589, 670
FokI GGATG 2 cut(s) 21, 84
FriOI GRGCYC 3 cut(s) 544, 553, 597
Fsp4HI GCNGC 4 cut(s) 43, 287, 589, 670
FspBI CTAG 1 cut(s) 309
GlaI GCGC 2 cut(s) 506, 508
GluI GCNGC 4 cut(s) 43, 287, 589, 670
HaeIII GGCC 3 cut(s) 466, 477, 515
HapII CCGG 2 cut(s) 346, 631
HhaI GCGC 2 cut(s) 507, 509
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 3 cut(s) 188, 203, 639
Hin6I GCGC 2 cut(s) 505, 507
HinP1I GCGC 2 cut(s) 505, 507
HinfI GANTC 2 cut(s) 84, 349
HpaII CCGG 2 cut(s) 346, 631
HphI GGTGA 2 cut(s) 18, 620
Hpy166II GTNNAC 2 cut(s) 88, 641
Hpy188I TCNGA 3 cut(s) 256, 359, 539
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 88, 641
Hpy99I CGWCG 1 cut(s) 603
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 1 cut(s) 6
HpyCH4IV ACGT 2 cut(s) 10, 619
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 292, 548, 601
HpyF3I CTNAG 1 cut(s) 82
HpySE526I ACGT 2 cut(s) 10, 619
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 3 cut(s) 188, 203, 639
HspAI GCGC 2 cut(s) 505, 507
KspI CCGCGG 1 cut(s) 94
LguI GCTCTTC 2 cut(s) 528, 549
LmnI GCTCC 2 cut(s) 83, 292
LpnPI CCDG 9 cut(s) 52, 94, 275, 359, 459, 486, 624, 644, 661
Lsp1109I GCAGC 2 cut(s) 29, 298
MaeI CTAG 1 cut(s) 309
MaeII ACGT 2 cut(s) 10, 619
MaeIII GTNAC 2 cut(s) 6, 20
MboII GAAGA 2 cut(s) 515, 536
MfeI CAATTG 2 cut(s) 238, 663
MhlI GDGCHC 5 cut(s) 228, 297, 544, 553, 597
MluCI AATT 9 cut(s) 63, 157, 238, 245, 323, 360, 381, 575, 663
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 1 cut(s) 93
MseI TTAA 1 cut(s) 457
MslI CAYNNNNRTG 2 cut(s) 183, 300
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 2 cut(s) 346, 631
MspR9I CCNGG 1 cut(s) 474
MunI CAATTG 2 cut(s) 238, 663
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 3 cut(s) 93, 507, 591
MwoI GCNNNNNNNGC 3 cut(s) 292, 548, 601
NdeI CATATG 2 cut(s) 210, 318
NlaIII CATG 3 cut(s) 188, 203, 639
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 6, 20
NspI RCATGY 1 cut(s) 188
OliI CACNNNNGTG 1 cut(s) 300
PauI GCGCGC 1 cut(s) 505
PciSI GCTCTTC 2 cut(s) 528, 549
PfeI GAWTC 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 630
PkrI GCNGC 4 cut(s) 44, 288, 590, 671
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 97
PteI GCGCGC 1 cut(s) 505
RsaI GTAC 4 cut(s) 558, 573, 609, 642
RsaNI GTAC 4 cut(s) 557, 572, 608, 641
RseI CAYNNNNRTG 2 cut(s) 183, 300
SacI GAGCTC 1 cut(s) 544
SacII CCGCGG 1 cut(s) 94
SapI GCTCTTC 2 cut(s) 528, 549
SaqAI TTAA 1 cut(s) 457
SatI GCNGC 4 cut(s) 43, 287, 589, 670
ScaI AGTACT 1 cut(s) 558
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 5 cut(s) 228, 297, 544, 553, 597
SetI ASST 9 cut(s) 13, 80, 101, 170, 475, 544, 570, 613, 622
Sfr303I CCGCGG 1 cut(s) 94
SgrBI CCGCGG 1 cut(s) 94
SmiMI CAYNNNNRTG 2 cut(s) 183, 300
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
Sse9I AATT 9 cut(s) 63, 157, 238, 245, 323, 360, 381, 575, 663
SsiI CCGC 6 cut(s) 91, 93, 235, 284, 589, 669
SspMI CTAG 1 cut(s) 309
SstI GAGCTC 1 cut(s) 544
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 1 cut(s) 6
TaiI ACGT 2 cut(s) 13, 622
TaqI TCGA 1 cut(s) 335
TaqII GACCGA 2 cut(s) 321, 470
TasI AATT 9 cut(s) 63, 157, 238, 245, 323, 360, 381, 575, 663
TatI WGTACW 2 cut(s) 556, 571
TauI GCSGC 2 cut(s) 591, 672
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 457
Tru9I TTAA 1 cut(s) 457
TscAI CASTG 1 cut(s) 29
TseFI GTSAC 2 cut(s) 6, 20
TseI GCWGC 2 cut(s) 42, 286
Tsp45I GTSAC 2 cut(s) 6, 20
TspDTI ATGAA 2 cut(s) 88, 188
TspRI CASTG 1 cut(s) 29
XapI RAATTY 2 cut(s) 360, 381
XceI RCATGY 1 cut(s) 188
XspI CTAG 1 cut(s) 309
ZraI GACGTC 1 cut(s) 11
ZrmI AGTACT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.