Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002588

Physical Location & Seq

Genomic Coordinates Reverse (-)

22601338 .. 22601938

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G220200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTGATCTTGTTCATTGTTATGACCTGTGGTGACGGTGGGACATTAACCGCCGCCTACCCAACTCATAGCATAAGCATTTTTATATCTCTGGTAACCATCTGGAATTACCTTGGAAGAGTTACATCCGGCTTCTCTTCAGAAGTGCTTTTGAAAAAGTATAAGTTCCCTTGTCCCCTTCTGCTCACTCTTGTGCTTCTTTTATCATGCGTTGGCCATCTTCTAATCGCCTTCGGCATCCCCAACTGTCTCTACTTTGCTTCTGTGATTATTGGGTTCTGTTCTGGGGCACAATGGCCATTGTTTTTTGCCATTGTATCAGAAATCTTTGGCCTCAAATACTGTTCCACTTTGATCAATGTTGGTGGTGCTGCTAGCCCTATTGGGGCTTATCTTCTGAATGTCAAAATGGCTGATAATTTATATGATGCAGAGGCCTTGAAGCAGTTGGAAGCTTTGGGTAGGGTTAGGAAAGCAGGGGAGGACTTGACTTGTGAAGGAGTGAATTGTTACAAATTGGCCTTCATTATAATGGCTGCAGTGGCTTTGTTTGGAAGCCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Nodulin-like

Protein Analysis

189

Amino Acids

20.22

Weight (kDa)

7.51

Isoelectric Point (pI)

22.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39210
fragaria_vesca	FvH4_6g16630 FvH4_7g18510
malus_domestica	MD01G1101400.v1.1 MD04G1090400.v1.1 MD07G1168000.v1.1
prunus_persica	Prupe.2G206600_v2.0.a1 Prupe.6G220200_v2.0.a1 Prupe.7G127100_v2.0.a1
pyrus_communis	pycom07g16250 pycom12g10870
rosa_chinensis	RchiOBHm_Chr1g0334871 RchiOBHm_Chr1g0362291 RchiOBHm_Chr3g0470591
rosa_laevigata	RLG00000024257 RLG00000027655 RLG00000029413
rosa_multiflora	Rmu_co8175752.1_g000001 Rmu_sc0000574.1_g000047 Rmu_sc0002115.1_g000014 Rmu_sc0007125.1_g000010 Rmu_ssc0000009.1_g000029
rosa_roxburghii	Rroxscaffold_4G00294280 Rroxscaffold_6G00410710
rosa_rugosa	Rorug01G0117400 Rorug01G0297200 Rorug03G0110100.1
rosa_samantha	Rh1AG306000 Rh1BG108600 Rh1BG269500 Rh1CG287000 Rh1DG145500 Rh1DG299600 Rh3AG160300 Rh3BG184800 Rh3CG175300 Rh3DG189900
rosa_wichuraiana	Rw1G011680 Rw1G027150 Rw3G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AciI	CCGC	2 cut(s)	51, 54
AcoI	YGGCCR	2 cut(s)	214, 296
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	154, 442
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	1 cut(s)	455
AluI	AGCT	1 cut(s)	455
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	5 cut(s)	214, 296, 331, 435, 519
ApeKI	GCWGC	2 cut(s)	371, 536
AsuHPI	GGTGA	1 cut(s)	44
AsuNHI	GCTAGC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	292
BalI	TGGCCA	2 cut(s)	216, 298
BbvI	GCAGC	2 cut(s)	358, 523
BccI	CCATC	2 cut(s)	107, 225
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	537
BisI	GCNGC	3 cut(s)	54, 372, 537
BlsI	GCNGC	3 cut(s)	55, 373, 538
BmsI	GCATC	2 cut(s)	246, 418
BmtI	GCTAGC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	125, 237
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	358, 523
BshFI	GGCC	5 cut(s)	216, 298, 333, 437, 521
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	55, 159
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	55, 159
BsnI	GGCC	5 cut(s)	216, 298, 333, 437, 521
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	6, 354
BspACI	CCGC	2 cut(s)	51, 54
BspANI	GGCC	5 cut(s)	216, 298, 333, 437, 521
BspMAI	CTGCAG	1 cut(s)	541
BspOI	GCTAGC	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	2 cut(s)	6, 354
BssT1I	CCWWGG	1 cut(s)	112
Bst4CI	ACNGT	3 cut(s)	38, 248, 344
Bst6I	CTCTTC	2 cut(s)	112, 142
BstC8I	GCNNGC	1 cut(s)	376
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	125, 237
BstKTI	GATC	2 cut(s)	9, 357
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	6, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstPI	GGTNACC	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	358, 523
BsuRI	GGCC	5 cut(s)	216, 298, 333, 437, 521
BtsCI	GGATG	2 cut(s)	125, 237
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	376
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	1 cut(s)	207
DpnI	GATC	2 cut(s)	8, 356
DpnII	GATC	2 cut(s)	6, 354
EaeI	YGGCCR	2 cut(s)	214, 296
Eam1104I	CTCTTC	2 cut(s)	112, 142
EarI	CTCTTC	2 cut(s)	112, 142
Eco130I	CCWWGG	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	1 cut(s)	210
FaiI	YATR	9 cut(s)	23, 69, 74, 86, 162, 208, 424, 426, 530
FaqI	GGGAC	2 cut(s)	55, 159
FatI	CATG	1 cut(s)	206
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	54, 372, 537
FokI	GGATG	2 cut(s)	112, 224
Fsp4HI	GCNGC	3 cut(s)	54, 372, 537
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	3 cut(s)	54, 372, 537
HaeIII	GGCC	5 cut(s)	216, 298, 333, 437, 521
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	453
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	142, 322, 399
Hpy188III	TCNNGA	1 cut(s)	103
HpyAV	CCTTC	4 cut(s)	188, 241, 491, 532
HpyCH4III	ACNGT	3 cut(s)	38, 248, 344
HpyCH4V	TGCA	2 cut(s)	431, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
Hsp92II	CATG	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	2 cut(s)	6, 354
LpnPI	CCDG	6 cut(s)	40, 77, 88, 142, 270, 462
Lsp1109I	GCAGC	2 cut(s)	358, 523
LweI	GCATC	2 cut(s)	246, 418
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	4 cut(s)	32, 94, 121, 509
MalI	GATC	2 cut(s)	8, 356
MboI	GATC	2 cut(s)	6, 354
MboII	GAAGA	4 cut(s)	129, 129, 212, 386
MhlI	GDGCHC	1 cut(s)	292
MlsI	TGGCCA	2 cut(s)	216, 298
MluCI	AATT	4 cut(s)	106, 418, 505, 515
MluNI	TGGCCA	2 cut(s)	216, 298
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	3 cut(s)	344, 427, 475
Mox20I	TGGCCA	2 cut(s)	216, 298
MscI	TGGCCA	2 cut(s)	216, 298
MseI	TTAA	2 cut(s)	47, 565
MslI	CAYNNNNRTG	3 cut(s)	20, 191, 530
Msp20I	TGGCCA	2 cut(s)	216, 298
MspI	CCGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	542
NdeII	GATC	2 cut(s)	6, 354
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	32
OliI	CACNNNNGTG	1 cut(s)	191
PceI	AGGCCT	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	55, 373, 538
PsiI	TTATAA	1 cut(s)	530
PspEI	GGTNACC	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	541
RseI	CAYNNNNRTG	3 cut(s)	20, 191, 530
SaqAI	TTAA	2 cut(s)	47, 565
SatI	GCNGC	3 cut(s)	54, 372, 537
Sau3AI	GATC	2 cut(s)	6, 354
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	3 cut(s)	29, 114, 457
SfaNI	GCATC	2 cut(s)	246, 418
SfcI	CTRYAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	3 cut(s)	20, 191, 530
Sse9I	AATT	4 cut(s)	106, 418, 505, 515
SseBI	AGGCCT	1 cut(s)	437
SsiI	CCGC	2 cut(s)	51, 54
SspMI	CTAG	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	437
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	3 cut(s)	38, 248, 344
TasI	AATT	4 cut(s)	106, 418, 505, 515
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	47, 565
Tru9I	TTAA	2 cut(s)	47, 565
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	2 cut(s)	371, 536
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	4, 514
TspRI	CASTG	1 cut(s)	546
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.