Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Forward (+)

14395913 .. 14400974

Gene Structure 5062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGTGGAAAGAGATACACGGCGTCCTCGTGGTTTTGGGTTTATTACATTTGGAGATCGACGGGCAATGGAAGATGCAATCCGGGAGATGCATGGACAGGAGTTGGGTGCCCGCACCATCTCCGTGAACAAAGCCCAACCCAGAATGGGAGGGGAAGATTTAGACCATGGCTATAGAGGAGGAGGAGGGGGAGGATACTCTTCTGGTGGCAGGAGAAGCTACGGAGGAGGTGGTGATAGATCTGTGGGCCAAGATGAATGCTTCAAGTGTGGGCGTACAGGACATTGGGCTCGAGACTGCCCTTCGGCTGGTGGTGGAAGAGGTGGAGGGGGAGGTTCATTCTCTTCACATTCTAGGTTCGGGGCTGGTGGGCGTGGGGATCGCTTTGGTGGAGATCATGATCGCTACATGGATGACCGTTATGATGGAGGGCGCTATGGAGACAGGGATCGTTTTGACAGCAGGGAGGACAAATATGGGAGCCGTGATCGCTATGTCAGTGACAGTACCCAGCTGGTGATCGTTTTGCTAGTGACAGATATGGTGGTTCTGATCGCTATCCTCAAAATGGCTATGGCAAAGACAGAGGCTATGATAGGGATGGTGGAGCAAGAGGTGGCAGTGATAGATATGGAAGGGGAGGTCCAGCAAGAGATGAGGGTGGTTACCGAAGCAGGGCTGGCCCTTACGACCGCCCGAGCAGGGGAGGGCGGCCATCTTCCTTTGACCGCTACTAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

247

Amino Acids

26.58

Weight (kDa)

6.1

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 40	1.1e-07	RNA recognition motif
zf-CCHC	PF00098	86 - 102	2.1e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	4 cut(s)	112, 693, 711, 729
AclWI	GGATC	2 cut(s)	387, 456
AcoI	YGGCCR	1 cut(s)	712
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	2 cut(s)	277, 508
AfiI	CCNNNNNNNGG	6 cut(s)	146, 308, 568, 675, 702, 703
AgsI	TTSAA	1 cut(s)	265
AhlI	ACTAGT	1 cut(s)	734
AluBI	AGCT	2 cut(s)	219, 514
AluI	AGCT	2 cut(s)	219, 514
Alw26I	GTCTC	2 cut(s)	288, 435
AlwI	GGATC	2 cut(s)	387, 456
Ama87I	CYCGRG	2 cut(s)	291, 696
AoxI	GGCC	3 cut(s)	247, 681, 712
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	3 cut(s)	247, 643, 682
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	245, 529
AvaI	CYCGRG	2 cut(s)	291, 696
AvaII	GGWCC	1 cut(s)	643
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	27
BccI	CCATC	4 cut(s)	125, 419, 595, 723
BceAI	ACGGC	2 cut(s)	35, 468
BciVI	GTATCC	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	288, 435
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	3 cut(s)	354, 530, 735
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	188
BglII	AGATCT	1 cut(s)	239
BisI	GCNGC	1 cut(s)	712
BlsI	GCNGC	1 cut(s)	713
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	643
BmeT110I	CYCGRG	2 cut(s)	291, 696
BmgT120I	GGNCC	3 cut(s)	247, 643, 682
BmiI	GGNNCC	2 cut(s)	109, 482
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	64, 78
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	2 cut(s)	399, 557
BsaHI	GRCGYC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 308, 568, 675, 702, 703
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	2 cut(s)	399, 557
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	418, 606
BseJI	GATNNNNATC	2 cut(s)	399, 557
BseLI	CCNNNNNNNGG	6 cut(s)	146, 308, 568, 675, 702, 703
BseMI	GCAATG	1 cut(s)	72
BseRI	GAGGAG	4 cut(s)	192, 195, 198, 240
BseSI	GKGCMC	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	510
Bsh1285I	CGRYCG	1 cut(s)	693
BshFI	GGCC	3 cut(s)	249, 683, 714
BshNI	GGYRCC	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	693
BsiHKCI	CYCGRG	2 cut(s)	291, 696
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	6 cut(s)	146, 308, 568, 675, 702, 703
BsmAI	GTCTC	2 cut(s)	288, 435
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	3 cut(s)	249, 683, 714
BsoBI	CYCGRG	2 cut(s)	291, 696
Bsp1286I	GDGCHC	2 cut(s)	112, 292
Bsp143I	GATC	9 cut(s)	55, 239, 379, 394, 400, 448, 487, 519, 552
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	4 cut(s)	112, 693, 711, 729
BspANI	GGCC	3 cut(s)	249, 683, 714
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	109, 482
BspPI	GGATC	2 cut(s)	387, 456
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	9 cut(s)	55, 239, 379, 394, 400, 448, 487, 519, 552
BssNI	GRCGYC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	419, 506
Bst6I	CTCTTC	3 cut(s)	205, 313, 349
BstACI	GRCGYC	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	112, 681
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	664
BstF5I	GGATG	2 cut(s)	418, 606
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	9 cut(s)	58, 242, 382, 397, 403, 451, 490, 522, 555
BstMAI	GTCTC	2 cut(s)	288, 435
BstMBI	GATC	9 cut(s)	55, 239, 379, 394, 400, 448, 487, 519, 552
BstMCI	CGRYCG	1 cut(s)	693
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 489, 680
BstPI	GGTNACC	1 cut(s)	664
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	3 cut(s)	249, 683, 714
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	418, 606
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	505, 627
Cac8I	GCNNGC	2 cut(s)	112, 681
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	3 cut(s)	247, 643, 682
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	276, 507
CviAII	CATG	4 cut(s)	92, 167, 398, 409
CviQI	GTAC	2 cut(s)	276, 507
DpnI	GATC	9 cut(s)	57, 241, 381, 396, 402, 450, 489, 521, 554
DpnII	GATC	9 cut(s)	55, 239, 379, 394, 400, 448, 487, 519, 552
EaeI	YGGCCR	1 cut(s)	712
Eam1104I	CTCTTC	3 cut(s)	205, 313, 349
EarI	CTCTTC	3 cut(s)	205, 313, 349
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	643
Eco88I	CYCGRG	2 cut(s)	291, 696
Eco91I	GGTNACC	1 cut(s)	664
EcoO65I	GGTNACC	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	4 cut(s)	95, 170, 401, 412
FatI	CATG	4 cut(s)	91, 166, 397, 408
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	1 cut(s)	712
FokI	GGATG	2 cut(s)	425, 613
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	712
FspBI	CTAG	3 cut(s)	354, 530, 735
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	1 cut(s)	712
GsaI	CCCAGC	1 cut(s)	514
HaeII	RGCGCY	1 cut(s)	436
HaeIII	GGCC	3 cut(s)	249, 683, 714
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	4 cut(s)	95, 170, 401, 412
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	245, 529
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	2 cut(s)	293, 398
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	312, 629
HpyCH4III	ACNGT	2 cut(s)	419, 506
HpyCH4V	TGCA	2 cut(s)	77, 91
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 489, 680
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	95, 170, 401, 412
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	9 cut(s)	55, 239, 379, 394, 400, 448, 487, 519, 552
LmnI	GCTCC	2 cut(s)	480, 607
LweI	GCATC	2 cut(s)	64, 78
MaeI	CTAG	3 cut(s)	354, 530, 735
MaeIII	GTNAC	3 cut(s)	500, 532, 664
MalI	GATC	9 cut(s)	57, 241, 381, 396, 402, 450, 489, 521, 554
MboI	GATC	9 cut(s)	55, 239, 379, 394, 400, 448, 487, 519, 552
MboII	GAAGA	6 cut(s)	83, 167, 192, 330, 336, 710
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	112, 292
Mph1103I	ATGCAT	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	514
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	216, 489, 680
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	9 cut(s)	55, 239, 379, 394, 400, 448, 487, 519, 552
NlaIII	CATG	4 cut(s)	95, 170, 401, 412
NlaIV	GGNNCC	2 cut(s)	109, 482
NmuCI	GTSAC	2 cut(s)	500, 532
NsiI	ATGCAT	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	291
PagI	TCATGA	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PctI	GAATGC	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	713
PspEI	GGTNACC	1 cut(s)	664
PspFI	CCCAGC	1 cut(s)	510
PspN4I	GGNNCC	2 cut(s)	109, 482
PspPI	GGNCC	3 cut(s)	247, 643, 682
PsuI	RGATCY	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	514
RsaI	GTAC	2 cut(s)	277, 508
RsaNI	GTAC	2 cut(s)	276, 507
RseI	CAYNNNNRTG	1 cut(s)	122
SatI	GCNGC	1 cut(s)	712
Sau3AI	GATC	9 cut(s)	55, 239, 379, 394, 400, 448, 487, 519, 552
Sau96I	GGNCC	3 cut(s)	247, 643, 682
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	112, 292
SetI	ASST	8 cut(s)	221, 232, 325, 337, 359, 516, 618, 645
SfaNI	GCATC	2 cut(s)	64, 78
SfcI	CTRYAG	1 cut(s)	172
Sfr274I	CTCGAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	643
SlaI	CTCGAG	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
SpeI	ACTAGT	1 cut(s)	734
SsiI	CCGC	4 cut(s)	112, 693, 711, 729
SspMI	CTAG	3 cut(s)	354, 530, 735
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	419, 506
TaqI	TCGA	2 cut(s)	58, 292
TauI	GCSGC	1 cut(s)	714
TscAI	CASTG	2 cut(s)	505, 627
TseFI	GTSAC	2 cut(s)	500, 532
Tsp45I	GTSAC	2 cut(s)	500, 532
TspDTI	ATGAA	2 cut(s)	270, 327
TspGWI	ACGGA	2 cut(s)	112, 237
TspRI	CASTG	2 cut(s)	505, 627
VpaK11BI	GGWCC	1 cut(s)	643
XhoI	CTCGAG	1 cut(s)	291
XspI	CTAG	3 cut(s)	354, 530, 735
Zsp2I	ATGCAT	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.