Rh4DG247600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003597
Physical Location & Seq
Reverse (-)
46008322 .. 46008558
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG247600.1

Sequence Viewer

Length: 237 bp
ATGGGAGCGTCGCTTGGTGGTACGAAGGTGGATTCCAAGGGATCCAGATCGGATCAGGGTGACCCATGTTGGTTTGAGTCGTTTGGAGTCACCTTGTGGAGAGGGGTGGCGGCGATGCATGATGGCTGGTTAGGGTTGGCAGAAAGAGAGGCTGCCGGCCTGAGGTTGCCCAATGCGATGGTTGGGTTGGCTGCCGGTGGGTGGATGATGGGGCTTTGTCTTGCGGATTGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.27

Weight (kDa)

5.04

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 224
AclWI GGATC 3 cut(s) 36, 49, 60
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 162, 201
AlwI GGATC 3 cut(s) 36, 49, 60
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 152, 191
AsuHPI GGTGA 2 cut(s) 71, 82
AxyI CCTNAGG 1 cut(s) 161
BaeI ACNNNNGTAYC 2 cut(s) 12, 45
BamHI GGATCC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 139, 178
BccI CCATC 3 cut(s) 116, 172, 202
BisI GCNGC 3 cut(s) 111, 153, 192
BlsI GCNGC 3 cut(s) 112, 154, 193
BmiI GGNNCC 1 cut(s) 43
BmsI GCATC 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 201
Bse118I RCCGGY 2 cut(s) 155, 194
Bse21I CCTNAGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 162, 201
BseMII CTCAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 139, 178
BshFI GGCC 1 cut(s) 159
BsiSI CCGG 2 cut(s) 156, 195
BslI CCNNNNNNNGG 2 cut(s) 162, 201
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 41, 47, 52
BspACI CCGC 2 cut(s) 110, 224
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 43
BspPI GGATC 3 cut(s) 36, 49, 60
BsrFI RCCGGY 2 cut(s) 155, 194
BssAI RCCGGY 2 cut(s) 155, 194
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 3 cut(s) 41, 47, 52
BssT1I CCWWGG 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 161
BstEII GGTNACC 1 cut(s) 59
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 3 cut(s) 44, 50, 55
BstMBI GATC 3 cut(s) 41, 47, 52
BstPI GGTNACC 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 139, 178
BstX2I RGATCY 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 41
Bsu36I CCTNAGG 1 cut(s) 161
BsuRI GGCC 1 cut(s) 159
BtgZI GCGATG 2 cut(s) 128, 191
BtsCI GGATG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 157
Cfr10I RCCGGY 2 cut(s) 155, 194
Csp6I GTAC 1 cut(s) 21
CviAII CATG 2 cut(s) 66, 119
CviJI RGCY 5 cut(s) 126, 152, 159, 191, 214
CviKI_1 RGCY 5 cut(s) 126, 152, 159, 191, 214
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 1 cut(s) 161
DpnI GATC 3 cut(s) 43, 49, 54
DpnII GATC 3 cut(s) 41, 47, 52
DraIII CACNNNGTG 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 161
Eco91I GGTNACC 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 2 cut(s) 69, 122
FaiI YATR 2 cut(s) 67, 120
FatI CATG 2 cut(s) 65, 118
Fnu4HI GCNGC 3 cut(s) 111, 153, 192
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 3 cut(s) 111, 153, 192
GluI GCNGC 3 cut(s) 111, 153, 192
HaeIII GGCC 1 cut(s) 159
HapII CCGG 2 cut(s) 156, 195
Hin1II CATG 2 cut(s) 69, 122
HinfI GANTC 3 cut(s) 32, 77, 87
HpaII CCGG 2 cut(s) 156, 195
HphI GGTGA 2 cut(s) 71, 82
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 118
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 2 cut(s) 69, 122
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 3 cut(s) 41, 47, 52
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 6 cut(s) 41, 58, 112, 169, 173, 208
Lsp1109I GCAGC 2 cut(s) 139, 178
LweI GCATC 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 59, 88
MalI GATC 3 cut(s) 43, 49, 54
MboI GATC 3 cut(s) 41, 47, 52
MflI RGATCY 1 cut(s) 41
MlyI GAGTC 2 cut(s) 86, 96
MnlI CCTC 3 cut(s) 95, 142, 156
Mph1103I ATGCAT 1 cut(s) 120
MroNI GCCGGC 1 cut(s) 155
MspI CCGG 2 cut(s) 156, 195
NaeI GCCGGC 1 cut(s) 157
NdeII GATC 3 cut(s) 41, 47, 52
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 2 cut(s) 69, 122
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 2 cut(s) 59, 88
NsiI ATGCAT 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 3 cut(s) 112, 154, 193
PleI GAGTC 2 cut(s) 85, 95
PpsI GAGTC 2 cut(s) 85, 95
PspEI GGTNACC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 41
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SatI GCNGC 3 cut(s) 111, 153, 192
Sau3AI GATC 3 cut(s) 41, 47, 52
SchI GAGTC 2 cut(s) 86, 96
SetI ASST 3 cut(s) 30, 95, 167
SfaNI GCATC 1 cut(s) 105
SsiI CCGC 2 cut(s) 110, 224
StyI CCWWGG 1 cut(s) 36
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 32
TseFI GTSAC 2 cut(s) 59, 88
TseI GCWGC 2 cut(s) 152, 191
Tsp45I GTSAC 2 cut(s) 59, 88
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.