Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Forward (+)

13572693 .. 13577388

Gene Structure 4696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCCGGAAAAGAAGAGTACCGAATCTTCGTCGGAGGTTTGGCCTGGGACGTCACAGAGCATCAGCTCGAGAGCGCTTTTGCTCGCTTTGGCAAAGTCCATGAATCTCAGATCATGGTGGAAAGAGATACACGGCGTCCTCGTGGTTTTGGGTTTATTACATTTGGAGATCGACGGGCAATGGAAGATGCAATCCGGGAGATGCATGGACAGGAATTGGGTGCCCGCACCATCTCCGTGAACAAAGCCCAACCCAGAATGGGAGGGGAAGATTTAGAACATGGCTATAGAGGAGGAGGAGGGGGAGGATACTCTTCTGGTGGCAGGAGAAGCTACGGAGGTGGTGGTGATAGATCTGTGGGCCAAGATGAATGCTTCAAGTGTGGGCGTACAGGACATTGGGCTCGAGACTGCCCTTCGGCTGGTGGTGGAAGAGGTGGAGGGGGAGGTTCATTCTCTTCACATTCTAGGTTCGGGGCTGGTGGGCGTGGGGATCGCTTTGGTGGAGATCATGATCGCTACATGGATGACCGTTATGATGGAGGGCGCTATGGAGACAGGGATCGTTTTGACAGCAGGGAGGACAAATATGGGAGCCGTGATCGCTATGTCAGTGACAGGTACCCAGCTGGTGATCGTTTTGCTAGTGACAGATATGGTGGTTCTGATCGCTATCCTCAAAATGGCTATGGCAAAGACAGAGGCTATGATAGGGATGGTGGAGCAAGAGGTGGCAGTGATAGATATGGAAGGGGAGGTCCAGCAAGAGATGAGGGAGGTTACCGTAGCAGGGCTGGCCCTTACGACCGCCCTAGCAGGGGAGGGCGGCCATCTTCCTTTGACCGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

284

Amino Acids

31.09

Weight (kDa)

9.29

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	8 - 70	2.5e-07	RNA recognition motif
RRM_1	PF00076	9 - 78	2.2e-19	RNA recognition motif
zf-CCHC	PF00098	124 - 140	2.5e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
Acc65I	GGTACC	1 cut(s)	621
AccB1I	GGYRCC	2 cut(s)	221, 621
AciI	CCGC	4 cut(s)	226, 808, 826, 844
AclWI	GGATC	2 cut(s)	501, 570
AcoI	YGGCCR	2 cut(s)	3, 827
AcyI	GRCGYC	2 cut(s)	51, 136
AfaI	GTAC	3 cut(s)	20, 391, 623
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	6 cut(s)	260, 422, 683, 790, 817, 818
AgsI	TTSAA	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	67, 333, 629
AluI	AGCT	3 cut(s)	67, 333, 629
Alw26I	GTCTC	2 cut(s)	402, 549
AlwI	GGATC	2 cut(s)	501, 570
Ama87I	CYCGRG	2 cut(s)	68, 405
Aor51HI	AGCGCT	1 cut(s)	76
AoxI	GGCC	5 cut(s)	3, 42, 361, 796, 827
Asp718I	GGTACC	1 cut(s)	621
AspLEI	GCGC	2 cut(s)	77, 549
AspS9I	GGNCC	3 cut(s)	361, 758, 797
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	359, 644
AvaI	CYCGRG	2 cut(s)	68, 405
AvaII	GGWCC	1 cut(s)	758
BaeGI	GKGCMC	1 cut(s)	226
BanI	GGYRCC	2 cut(s)	221, 621
BanII	GRGCYC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BauI	CACGAG	1 cut(s)	141
BccI	CCATC	4 cut(s)	239, 533, 710, 838
BceAI	ACGGC	2 cut(s)	149, 582
BciT130I	CCWGG	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	402, 549
BfaI	CTAG	3 cut(s)	468, 645, 813
BfmI	CTRYAG	1 cut(s)	286
BfoI	RGCGCY	2 cut(s)	78, 550
BfuI	GTATCC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	1 cut(s)	827
BlsI	GCNGC	1 cut(s)	828
Bme1390I	CCNGG	2 cut(s)	46, 197
Bme18I	GGWCC	1 cut(s)	758
BmeT110I	CYCGRG	2 cut(s)	68, 405
BmgT120I	GGNCC	3 cut(s)	361, 758, 797
BmiI	GGNNCC	3 cut(s)	223, 596, 623
BmrFI	CCNGG	2 cut(s)	46, 197
BmsI	GCATC	3 cut(s)	70, 178, 192
BpuMI	CCSGG	1 cut(s)	197
BsaBI	GATNNNNATC	2 cut(s)	513, 672
BsaHI	GRCGYC	2 cut(s)	51, 136
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	6 cut(s)	260, 422, 683, 790, 817, 818
Bse3DI	GCAATG	1 cut(s)	186
Bse8I	GATNNNNATC	2 cut(s)	513, 672
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	532, 721
BseJI	GATNNNNATC	2 cut(s)	513, 672
BseLI	CCNNNNNNNGG	6 cut(s)	260, 422, 683, 790, 817, 818
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	3 cut(s)	306, 309, 312
BseSI	GKGCMC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	625
Bsh1285I	CGRYCG	1 cut(s)	808
BshFI	GGCC	5 cut(s)	5, 44, 363, 798, 829
BshNI	GGYRCC	2 cut(s)	221, 621
BsiEI	CGRYCG	1 cut(s)	808
BsiHKCI	CYCGRG	2 cut(s)	68, 405
BsiSI	CCGG	2 cut(s)	6, 196
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	6 cut(s)	260, 422, 683, 790, 817, 818
BsmAI	GTCTC	2 cut(s)	402, 549
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	5 cut(s)	5, 44, 363, 798, 829
BsoBI	CYCGRG	2 cut(s)	68, 405
Bsp1286I	GDGCHC	2 cut(s)	226, 406
BspACI	CCGC	4 cut(s)	226, 808, 826, 844
BspANI	GGCC	5 cut(s)	5, 44, 363, 798, 829
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	3 cut(s)	223, 596, 623
BspPI	GGATC	2 cut(s)	501, 570
BspT107I	GGYRCC	2 cut(s)	221, 621
BsrDI	GCAATG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	45
BssNI	GRCGYC	2 cut(s)	51, 136
BssSI	CACGAG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	533, 785
Bst6I	CTCTTC	4 cut(s)	9, 319, 427, 463
BstACI	GRCGYC	2 cut(s)	51, 136
BstC8I	GCNNGC	3 cut(s)	85, 226, 796
BstDEI	CTNAG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	779
BstF5I	GGATG	2 cut(s)	532, 721
BstH2I	RGCGCY	2 cut(s)	78, 550
BstHHI	GCGC	2 cut(s)	77, 549
BstMAI	GTCTC	2 cut(s)	402, 549
BstMCI	CGRYCG	1 cut(s)	808
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 603, 795
BstNI	CCWGG	1 cut(s)	46
BstPI	GGTNACC	1 cut(s)	779
BstSCI	CCNGG	2 cut(s)	44, 195
BstSFI	CTRYAG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	5 cut(s)	5, 44, 363, 798, 829
BtsCI	GGATG	2 cut(s)	532, 721
BtsI	GCAGTG	1 cut(s)	742
BtsIMutI	CAGTG	2 cut(s)	619, 742
Cac8I	GCNNGC	3 cut(s)	85, 226, 796
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	2 cut(s)	77, 549
Cfr13I	GGNCC	3 cut(s)	361, 758, 797
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	19, 390, 622
CviAII	CATG	6 cut(s)	101, 115, 206, 281, 512, 523
CviQI	GTAC	3 cut(s)	19, 390, 622
DdeI	CTNAG	1 cut(s)	108
EaeI	YGGCCR	2 cut(s)	3, 827
Eam1104I	CTCTTC	4 cut(s)	9, 319, 427, 463
EarI	CTCTTC	4 cut(s)	9, 319, 427, 463
Eco24I	GRGCYC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	758
Eco47III	AGCGCT	1 cut(s)	76
Eco88I	CYCGRG	2 cut(s)	68, 405
Eco91I	GGTNACC	1 cut(s)	779
EcoO65I	GGTNACC	1 cut(s)	779
EcoRII	CCWGG	1 cut(s)	44
EcoT22I	ATGCAT	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	406
FaeI	CATG	6 cut(s)	104, 118, 209, 284, 515, 526
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	6 cut(s)	100, 114, 205, 280, 511, 522
FauI	CCCGC	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	827
FokI	GGATG	2 cut(s)	539, 728
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	1 cut(s)	827
FspBI	CTAG	3 cut(s)	468, 645, 813
GlaI	GCGC	2 cut(s)	76, 548
GluI	GCNGC	1 cut(s)	827
GsaI	CCCAGC	1 cut(s)	629
HaeII	RGCGCY	2 cut(s)	78, 550
HaeIII	GGCC	5 cut(s)	5, 44, 363, 798, 829
HapII	CCGG	2 cut(s)	6, 196
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	77, 549
Hin1I	GRCGYC	2 cut(s)	51, 136
Hin1II	CATG	6 cut(s)	104, 118, 209, 284, 515, 526
Hin6I	GCGC	2 cut(s)	75, 547
HinP1I	GCGC	2 cut(s)	75, 547
HinfI	GANTC	2 cut(s)	24, 104
HpaII	CCGG	2 cut(s)	6, 196
HphI	GGTGA	2 cut(s)	359, 644
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	35, 111, 667
Hpy188III	TCNNGA	3 cut(s)	70, 407, 512
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	2 cut(s)	35, 177
HpyAV	CCTTC	2 cut(s)	426, 744
HpyCH4III	ACNGT	2 cut(s)	533, 785
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	191, 205
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 603, 795
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	2 cut(s)	51, 136
Hsp92II	CATG	6 cut(s)	104, 118, 209, 284, 515, 526
HspAI	GCGC	2 cut(s)	75, 547
KpnI	GGTACC	1 cut(s)	625
LmnI	GCTCC	2 cut(s)	594, 722
LweI	GCATC	3 cut(s)	70, 178, 192
MaeI	CTAG	3 cut(s)	468, 645, 813
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	4 cut(s)	52, 614, 647, 779
MboII	GAAGA	8 cut(s)	19, 26, 197, 281, 306, 444, 450, 825
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	226, 406
MluCI	AATT	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	13
Mph1103I	ATGCAT	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	2 cut(s)	6, 196
MspR9I	CCNGG	2 cut(s)	46, 197
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	330, 603, 795
NciI	CCSGG	1 cut(s)	197
NlaIII	CATG	6 cut(s)	104, 118, 209, 284, 515, 526
NlaIV	GGNNCC	3 cut(s)	223, 596, 623
NmuCI	GTSAC	3 cut(s)	52, 614, 647
NsiI	ATGCAT	1 cut(s)	207
PaeR7I	CTCGAG	2 cut(s)	68, 405
PagI	TCATGA	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	24, 104
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	44
PspEI	GGTNACC	1 cut(s)	779
PspFI	CCCAGC	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	3 cut(s)	223, 596, 623
PspPI	GGNCC	3 cut(s)	361, 758, 797
PsuI	RGATCY	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	3 cut(s)	20, 391, 623
RsaNI	GTAC	3 cut(s)	19, 390, 622
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	1 cut(s)	827
Sau96I	GGNCC	3 cut(s)	361, 758, 797
ScrFI	CCNGG	2 cut(s)	46, 197
SduI	GDGCHC	2 cut(s)	226, 406
SfaNI	GCATC	3 cut(s)	70, 178, 192
SfcI	CTRYAG	1 cut(s)	286
Sfr274I	CTCGAG	2 cut(s)	68, 405
SinI	GGWCC	1 cut(s)	758
SlaI	CTCGAG	2 cut(s)	68, 405
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	68, 405
SmoI	CTYRAG	2 cut(s)	68, 405
Sse9I	AATT	1 cut(s)	215
SsiI	CCGC	4 cut(s)	226, 808, 826, 844
SspMI	CTAG	3 cut(s)	468, 645, 813
StyD4I	CCNGG	2 cut(s)	44, 195
TaaI	ACNGT	2 cut(s)	533, 785
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	3 cut(s)	69, 172, 406
TasI	AATT	1 cut(s)	215
TauI	GCSGC	1 cut(s)	829
TfiI	GAWTC	2 cut(s)	24, 104
TscAI	CASTG	2 cut(s)	619, 742
TseFI	GTSAC	3 cut(s)	52, 614, 647
Tsp45I	GTSAC	3 cut(s)	52, 614, 647
TspDTI	ATGAA	3 cut(s)	117, 384, 441
TspGWI	ACGGA	2 cut(s)	226, 351
TspRI	CASTG	2 cut(s)	619, 742
VpaK11BI	GGWCC	1 cut(s)	758
XhoI	CTCGAG	2 cut(s)	68, 405
XspI	CTAG	3 cut(s)	468, 645, 813
ZraI	GACGTC	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.