Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003597

Physical Location & Seq

Genomic Coordinates Reverse (-)

24087963 .. 24092793

Gene Structure 4831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G206800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCAGGGAAGGAAGATTTCCGCATATTCGTGGGAGGTTTGTCGTGGGACGTCACAGAGCGTCAGCTGGAGAGTGCTTTCCAGCGTTTCGGCAAAGTCCACGAAGCTCAGATCATGATGGAAAGAGATACAAATCGTCCTCGGGGTTTTGGGTTTATTACATTTGGAGATCGGCGAGCAATGGAAGATGCAATCCGGGAGATGCATGGGCGGGAGCTTGGTGATCGCATCATCTCTGTGAACAAAGCTCAACCCAAAATGGGAGGGGGAGGGGAGGATTTAGACCATGGCTATAGAGGAGGCTACTCAACTGGTGGCAGGAGAAACTATGGGGGAGGAGATAGACCTGTAGGGCAAGATGAATGCTTCAAGTGTGGGCGACCAGGACATTGGGCCCGAGATTGCCCTTCAGCTGGTGGTGGAAGAGGTGGAGGTTCATTCTCATCCCATTCTAGGTTTGGGGCTGGTGGCCGTGGGGATCGCTTTGGTGGAGACCGTGATCGCTATGTGGATGACCGTTATGATGGAGGGCGTTATGGAGAGAGGGACCGTTTTGACAGCAGGGAGGACAAGTATGGGAGCCGTGATCGCTATGTTAGTGACAGGTATCCAGCTGGTGATCGCTTTGCAAGTGATAGATATGGTGGTTCTGATCGTTATCCGCAAAATGGTTATGGCAAAGATAGAGGCTATGATAGGGATGCAAGGGGTGGAAGCGACAGATATGGGAGTGGAGGGCCAGCAAGAGATGAGGGCGGAAATTACAGAAGCAGGGCAGGTCCTTACGATCGCCCCAGCAGGGGAGGGCGCCCATCTTCCTTTGACCGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

278

Amino Acids

30.86

Weight (kDa)

9.29

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60650 AT1G60650 AT1G60650 AT1G60650 AT5G04280 AT5G04280 AT5G04280 AT5G04280 AT5G04280
fragaria_vesca	FvH4_7g18520 FvH4_7g18520 FvH4_7g18520
malus_domestica	MD01G1101500.v1.1 MD07G1168200.v1.1
prunus_persica	Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1 Prupe.2G206800_v2.0.a1
pyrus_communis	pycom01g12820 pycom07g16260
rosa_chinensis	RchiOBHm_Chr1g0362301
rosa_laevigata	RLG00000027653
rosa_multiflora	Rmu_co8090682.1_g000002 Rmu_ssc0000174.1_g000024
rosa_roxburghii	Rroxscaffold_4G00294270
rosa_rugosa	Rorug01G0297200 Rorug01G0297200 Rorug01G0297200 Rorug01G0297200
rosa_samantha	Rh1AG306100 Rh1BG269600 Rh1CG287100 Rh1DG299800 Rh4DG247600
rosa_wichuraiana	Rw1G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	767
AccB1I	GGYRCC	1 cut(s)	807
AciI	CCGC	5 cut(s)	22, 211, 662, 756, 826
AclWI	GGATC	1 cut(s)	486
AcoI	YGGCCR	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	393
AcyI	GRCGYC	2 cut(s)	51, 808
AfiI	CCNNNNNNNGG	6 cut(s)	260, 413, 453, 668, 799, 800
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	6 cut(s)	67, 107, 217, 248, 413, 614
AluI	AGCT	6 cut(s)	67, 107, 217, 248, 413, 614
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	486
Ama87I	CYCGRG	2 cut(s)	141, 396
AoxI	GGCC	3 cut(s)	393, 469, 737
ApaI	GGGCCC	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	810
AspS9I	GGNCC	5 cut(s)	393, 394, 547, 737, 779
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	233, 629
AvaI	CYCGRG	2 cut(s)	141, 396
AvaII	GGWCC	2 cut(s)	547, 779
BaeGI	GKGCMC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	807
BanII	GRGCYC	1 cut(s)	397
BccI	CCATC	3 cut(s)	112, 518, 820
BceAI	ACGGC	2 cut(s)	456, 567
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	618
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	2 cut(s)	292, 348
BfoI	RGCGCY	1 cut(s)	811
BfuAI	ACCTGC	1 cut(s)	767
BfuI	GTATCC	1 cut(s)	618
Bme1390I	CCNGG	2 cut(s)	197, 384
Bme18I	GGWCC	2 cut(s)	547, 779
BmeT110I	CYCGRG	2 cut(s)	141, 396
BmgT120I	GGNCC	5 cut(s)	393, 394, 547, 737, 779
BmiI	GGNNCC	4 cut(s)	395, 548, 581, 809
BmrFI	CCNGG	2 cut(s)	197, 384
BmsI	GCATC	4 cut(s)	178, 192, 237, 691
BpmI	CTGGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	197
BsaBI	GATNNNNATC	2 cut(s)	132, 657
BsaHI	GRCGYC	2 cut(s)	51, 808
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	3 cut(s)	140, 286, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	6 cut(s)	260, 413, 453, 668, 799, 800
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	186
Bse8I	GATNNNNATC	2 cut(s)	132, 657
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	140, 286, 472
BseGI	GGATG	3 cut(s)	443, 517, 706
BseJI	GATNNNNATC	2 cut(s)	132, 657
BseLI	CCNNNNNNNGG	6 cut(s)	260, 413, 453, 668, 799, 800
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	2 cut(s)	312, 351
BseSI	GKGCMC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	794
Bsh1285I	CGRYCG	1 cut(s)	790
BshFI	GGCC	3 cut(s)	395, 471, 739
BshNI	GGYRCC	1 cut(s)	807
BsiEI	CGRYCG	1 cut(s)	790
BsiHKCI	CYCGRG	2 cut(s)	141, 396
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	2 cut(s)	62, 560
BslI	CCNNNNNNNGG	6 cut(s)	260, 413, 453, 668, 799, 800
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	2 cut(s)	62, 560
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	395, 471, 739
Bso31I	GGTCTC	1 cut(s)	486
BsoBI	CYCGRG	2 cut(s)	141, 396
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	9 cut(s)	111, 169, 223, 478, 499, 586, 619, 652, 787
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	5 cut(s)	22, 211, 662, 756, 826
BspANI	GGCC	3 cut(s)	395, 471, 739
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	4 cut(s)	395, 548, 581, 809
BspMI	ACCTGC	1 cut(s)	767
BspPI	GGATC	1 cut(s)	486
BspT107I	GGYRCC	1 cut(s)	807
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	3 cut(s)	140, 286, 472
BssMI	GATC	9 cut(s)	111, 169, 223, 478, 499, 586, 619, 652, 787
BssNI	GRCGYC	2 cut(s)	51, 808
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	497, 518, 551
Bst6I	CTCTTC	1 cut(s)	418
BstACI	GRCGYC	2 cut(s)	51, 808
BstC8I	GCNNGC	2 cut(s)	177, 741
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	2 cut(s)	286, 472
BstF5I	GGATG	3 cut(s)	443, 517, 706
BstH2I	RGCGCY	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	810
BstKTI	GATC	9 cut(s)	114, 172, 226, 481, 502, 589, 622, 655, 790
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	9 cut(s)	111, 169, 223, 478, 499, 586, 619, 652, 787
BstMCI	CGRYCG	1 cut(s)	790
BstMWI	GCNNNNNNNGC	1 cut(s)	588
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	195, 382
BstSFI	CTRYAG	2 cut(s)	292, 348
BstSLI	GKGCMC	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	618
BsuRI	GGCC	3 cut(s)	395, 471, 739
BtgI	CCRYGG	2 cut(s)	286, 472
BtsCI	GGATG	3 cut(s)	443, 517, 706
BveI	ACCTGC	1 cut(s)	767
Cac8I	GCNNGC	2 cut(s)	177, 741
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	810
Cfr13I	GGNCC	5 cut(s)	393, 394, 547, 737, 779
CseI	GACGC	1 cut(s)	50
CviAII	CATG	3 cut(s)	115, 206, 287
DdeI	CTNAG	1 cut(s)	108
DinI	GGCGCC	1 cut(s)	809
DpnI	GATC	9 cut(s)	113, 171, 225, 480, 501, 588, 621, 654, 789
DpnII	GATC	9 cut(s)	111, 169, 223, 478, 499, 586, 619, 652, 787
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
EciI	GGCGGA	1 cut(s)	771
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	486
Eco47I	GGWCC	2 cut(s)	547, 779
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	2 cut(s)	141, 396
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	397
EgeI	GGCGCC	1 cut(s)	809
EheI	GGCGCC	1 cut(s)	809
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	3 cut(s)	118, 209, 290
FaqI	GGGAC	2 cut(s)	62, 560
FatI	CATG	3 cut(s)	114, 205, 286
FauI	CCCGC	1 cut(s)	204
FokI	GGATG	3 cut(s)	430, 524, 713
FriOI	GRGCYC	1 cut(s)	397
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	1 cut(s)	809
GsaI	CCCAGC	1 cut(s)	798
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	811
HaeIII	GGCC	3 cut(s)	395, 471, 739
HapII	CCGG	1 cut(s)	196
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	810
Hin1I	GRCGYC	2 cut(s)	51, 808
Hin1II	CATG	3 cut(s)	118, 209, 290
Hin6I	GCGC	1 cut(s)	808
HinP1I	GCGC	1 cut(s)	808
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	2 cut(s)	233, 629
Hpy166II	GTNNAC	2 cut(s)	100, 241
Hpy188I	TCNGA	2 cut(s)	111, 652
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	2 cut(s)	100, 241
HpyAV	CCTTC	2 cut(s)	4, 417
HpyCH4III	ACNGT	3 cut(s)	497, 518, 551
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	191, 205, 629, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	588
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	2 cut(s)	51, 808
Hsp92II	CATG	3 cut(s)	118, 209, 290
HspAI	GCGC	1 cut(s)	808
KasI	GGCGCC	1 cut(s)	807
Kzo9I	GATC	9 cut(s)	111, 169, 223, 478, 499, 586, 619, 652, 787
LmnI	GCTCC	2 cut(s)	214, 579
LweI	GCATC	4 cut(s)	178, 192, 237, 691
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	52, 599
MalI	GATC	9 cut(s)	113, 171, 225, 480, 501, 588, 621, 654, 789
MboI	GATC	9 cut(s)	111, 169, 223, 478, 499, 586, 619, 652, 787
MboII	GAAGA	4 cut(s)	26, 197, 435, 807
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	1 cut(s)	760
Mly113I	GGCGCC	1 cut(s)	808
Mph1103I	ATGCAT	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	29, 236
MspA1I	CMGCKG	3 cut(s)	67, 413, 614
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	197, 384
Mva1269I	GAATGC	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	588
NarI	GGCGCC	1 cut(s)	808
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	9 cut(s)	111, 169, 223, 478, 499, 586, 619, 652, 787
NlaIII	CATG	3 cut(s)	118, 209, 290
NlaIV	GGNNCC	4 cut(s)	395, 548, 581, 809
NmuCI	GTSAC	2 cut(s)	52, 599
NsiI	ATGCAT	1 cut(s)	207
PagI	TCATGA	1 cut(s)	114
PctI	GAATGC	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	195
Ple19I	CGATCG	1 cut(s)	790
PluTI	GGCGCC	1 cut(s)	811
PpuMI	RGGWCCY	1 cut(s)	779
Psp5II	RGGWCCY	1 cut(s)	779
Psp6I	CCWGG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	794
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	4 cut(s)	395, 548, 581, 809
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	5 cut(s)	393, 394, 547, 737, 779
PspPPI	RGGWCCY	1 cut(s)	779
PvuI	CGATCG	1 cut(s)	790
PvuII	CAGCTG	3 cut(s)	67, 413, 614
RseI	CAYNNNNRTG	2 cut(s)	29, 236
Sau3AI	GATC	9 cut(s)	111, 169, 223, 478, 499, 586, 619, 652, 787
Sau96I	GGNCC	5 cut(s)	393, 394, 547, 737, 779
ScrFI	CCNGG	2 cut(s)	197, 384
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	4 cut(s)	178, 192, 237, 691
SfcI	CTRYAG	2 cut(s)	292, 348
SfoI	GGCGCC	1 cut(s)	809
SinI	GGWCC	2 cut(s)	547, 779
SmiMI	CAYNNNNRTG	2 cut(s)	29, 236
Sse9I	AATT	1 cut(s)	760
SsiI	CCGC	5 cut(s)	22, 211, 662, 756, 826
SspDI	GGCGCC	1 cut(s)	807
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	195, 382
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	497, 518, 551
TaiI	ACGT	1 cut(s)	54
TasI	AATT	1 cut(s)	760
TseFI	GTSAC	2 cut(s)	52, 599
Tsp45I	GTSAC	2 cut(s)	52, 599
TspDTI	ATGAA	2 cut(s)	375, 426
VpaK11BI	GGWCC	2 cut(s)	547, 779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XspI	CTAG	1 cut(s)	453
ZraI	GACGTC	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.