AT1G60970

Clathrin adaptor complex small chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008972
Physical Location & Seq
Reverse (-)
22447811 .. 22449536
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60970.1

Sequence Viewer

Length: 534 bp
ATGGAATTGCCCCCAAAAGTGAAAAACATCTTGCTTTTGGATTCTGAAGGAAAGCGTGTAGCGGTTAAGTATTACTCAGATGACTGGCCAACAAATTCAGCTCAGGAAGCGTTCGAAAAATCCGTGTTTACAAAGACTCAGAAAACAAATGCTAGGACCGAAGTGGAAGTGACAGCACTGGAGAACAACATTGTTGTGTACAAATTTGTGCAAGATCTCCATTTCTTTGTTACGGGCGGTGAAGAGGAAAACGAGCTTATCTTAGCCAGTGTGCTTGAGGGACTCTTTGATGCAGTGACCCTTCTCCTTAGAAGCAATGTTGATAAGAGAGAGGCACTAGACAACCTTGATCTCATCTTTCTAAGCTTTGATGAAATTATCGATGGCGGTATTGTTCTGGAGACGGATGCAAATGTAATAGCAGGTAAAGCAGGGATCAATAGCACTGACCCTAACGCTCCTCTATCCGAGCAGACGATAAGTCAAGCACTCGCGACTGCAAGAGAACATTTGACAAGGTCACTTATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

177

Amino Acids

19.61

Weight (kDa)

4.58

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 7 - 140 9.4e-21 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 413
AccII CGCG 1 cut(s) 494
AciI CCGC 3 cut(s) 62, 237, 387
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 2 cut(s) 94, 203
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 200
AhdI GACNNNNNGTC 1 cut(s) 480
AluBI AGCT 3 cut(s) 101, 256, 366
AluI AGCT 3 cut(s) 101, 256, 366
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 443
AoxI GGCC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 94, 203
AspS9I GGNCC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 114
AvaII GGWCC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 88
BccI CCATC 1 cut(s) 377
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 2 cut(s) 153, 338
BfuAI ACCTGC 1 cut(s) 413
BglII AGATCT 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 156
BmeRI GACNNNNNGTC 1 cut(s) 480
BmgT120I GGNCC 1 cut(s) 156
BmsI GCATC 2 cut(s) 280, 397
BpmI CTGGAG 2 cut(s) 200, 419
Bpu10I CCTNAGC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 296
Bsa29I ATCGAT 1 cut(s) 381
Bse1I ACTGG 3 cut(s) 89, 183, 267
Bse3DI GCAATG 1 cut(s) 322
BseCI ATCGAT 1 cut(s) 381
BseGI GGATG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 3 cut(s) 90, 116, 152
BseNI ACTGG 3 cut(s) 89, 183, 267
BseRI GAGGAG 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 1 cut(s) 88
BshVI ATCGAT 1 cut(s) 381
BslFI GGGAC 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 395
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 3 cut(s) 214, 349, 435
Bsp68I TCGCGA 1 cut(s) 494
BspACI CCGC 3 cut(s) 62, 237, 387
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 3 cut(s) 89, 115, 151
BspDI ATCGAT 1 cut(s) 381
BspFNI CGCG 1 cut(s) 494
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 1 cut(s) 443
BspT104I TTCGAA 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 322
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 3 cut(s) 89, 183, 267
BssMI GATC 3 cut(s) 214, 349, 435
Bst6I CTCTTC 1 cut(s) 237
BstAUI TGTACA 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 114
BstDEI CTNAG 6 cut(s) 76, 102, 138, 262, 308, 362
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 1 cut(s) 494
BstKTI GATC 3 cut(s) 217, 352, 438
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 3 cut(s) 214, 349, 435
BstMWI GCNNNNNNNGC 2 cut(s) 107, 428
BstUI CGCG 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
Bsu15I ATCGAT 1 cut(s) 381
BsuRI GGCC 1 cut(s) 88
BsuTUI ATCGAT 1 cut(s) 381
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 4 cut(s) 176, 274, 300, 444
BtuMI TCGCGA 1 cut(s) 494
BveI ACCTGC 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 156
ClaI ATCGAT 1 cut(s) 381
Csp6I GTAC 1 cut(s) 199
CviJI RGCY 5 cut(s) 88, 101, 256, 266, 366
CviKI_1 RGCY 5 cut(s) 88, 101, 256, 266, 366
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 6 cut(s) 76, 102, 138, 262, 308, 362
DpnI GATC 3 cut(s) 216, 351, 437
DpnII GATC 3 cut(s) 214, 349, 435
DriI GACNNNNNGTC 1 cut(s) 480
EaeI YGGCCR 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 237
Eam1105I GACNNNNNGTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 395
FaiI YATR 1 cut(s) 527
FaqI GGGAC 1 cut(s) 294
FokI GGATG 1 cut(s) 419
FspBI CTAG 2 cut(s) 153, 338
GsuI CTGGAG 2 cut(s) 200, 419
HaeIII GGCC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 3 cut(s) 41, 136, 282
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 129, 199
Hpy188I TCNGA 4 cut(s) 46, 79, 141, 469
Hpy188III TCNNGA 3 cut(s) 104, 398, 493
Hpy8I GTNNAC 2 cut(s) 129, 199
HpyAV CCTTC 2 cut(s) 41, 311
HpyCH4V TGCA 4 cut(s) 211, 293, 410, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 428
HpyF3I CTNAG 6 cut(s) 76, 102, 138, 262, 308, 362
Kzo9I GATC 3 cut(s) 214, 349, 435
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 7 cut(s) 70, 89, 164, 280, 383, 408, 417
LweI GCATC 2 cut(s) 280, 397
MaeI CTAG 2 cut(s) 153, 338
MaeIII GTNAC 4 cut(s) 169, 229, 295, 519
MalI GATC 3 cut(s) 216, 351, 437
MboI GATC 3 cut(s) 214, 349, 435
MboII GAAGA 1 cut(s) 254
MflI RGATCY 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 88
MluCI AATT 4 cut(s) 5, 94, 203, 375
MluNI TGGCCA 1 cut(s) 88
MlyI GAGTC 2 cut(s) 130, 276
MnlI CCTC 4 cut(s) 238, 271, 325, 471
Mox20I TGGCCA 1 cut(s) 88
MscI TGGCCA 1 cut(s) 88
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 88
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 2 cut(s) 107, 428
NdeII GATC 3 cut(s) 214, 349, 435
NmuCI GTSAC 3 cut(s) 169, 295, 519
NruI TCGCGA 1 cut(s) 494
NspV TTCGAA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 41
PflFI GACNNNGTC 1 cut(s) 517
PleI GAGTC 2 cut(s) 130, 276
PpsI GAGTC 2 cut(s) 130, 276
PspPI GGNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 517
RruI TCGCGA 1 cut(s) 494
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 3 cut(s) 214, 349, 435
Sau96I GGNCC 1 cut(s) 156
SchI GAGTC 2 cut(s) 130, 276
SetI ASST 6 cut(s) 103, 258, 348, 368, 427, 521
SfaNI GCATC 2 cut(s) 280, 397
SfuI TTCGAA 1 cut(s) 114
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 4 cut(s) 5, 94, 203, 375
SsiI CCGC 3 cut(s) 62, 237, 387
SspMI CTAG 2 cut(s) 153, 338
TaqI TCGA 2 cut(s) 114, 381
TaqII GACCGA 1 cut(s) 173
TasI AATT 4 cut(s) 5, 94, 203, 375
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 4 cut(s) 183, 274, 300, 451
TseFI GTSAC 3 cut(s) 169, 295, 519
Tsp45I GTSAC 3 cut(s) 169, 295, 519
TspDTI ATGAA 1 cut(s) 387
TspGWI ACGGA 2 cut(s) 112, 419
TspRI CASTG 4 cut(s) 183, 274, 300, 451
Tth111I GACNNNGTC 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 2 cut(s) 94, 203
XspI CTAG 2 cut(s) 153, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.