Rroxscaffold_1G00063540

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008972
Physical Location & Seq
Forward (+)
85396095 .. 85398969
2875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063540.1

Sequence Viewer

Length: 678 bp
ATGAAATTTTGGGGTCCTTTCGTAATAAGGAAAAGTTTGGTGGTGGGTTTTGTGAATCGGGGAAGCTATTTATACGTGTCATGGAACCATAAATTTGCGCTTCGTCTTCTTCGTTTCTCAGAGAAAACTGTTTCTCCGAACAAAATGGAGTCCTGCCCTACCATAAAGAACATCCTCCTCCTAGATTCTGAAGGAAAACGTATAGCTGTCAAGTATTATTCAGAGGACTGGCCAACGAATAGTGCAAAAGAAGCTTTTGAGAAAACAGTTTTCACTAAAACTCAAAAGACAAATGCGCGGACAGAAGCTGAGATAGCAATGTTTGAGAACAGCATAGTAGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTTACCGGGGGTGATAATGAAAATGAGCTCATTTTAGCCACAGTTCTTCAGGGATTTTTTGATGCAGTTGGAATTCTCCTCAGAGGCAATGTGGACAAAAAGGAGGCACTTGAGAATTTGGACCTCATTCTACTATGTCTTGATGAAATTGTTGATGGCGGCATTGTTCTTGAGACCGATTCAAATGTTATAGCAAGTAAGGTTGCGAGTCATAGTATTGATTCTGGAGCTCCGTTATCTGAGCAGACAATAGGCCAAGCAATTGCTACTGCACGTGAACATTTTGCAAGATCTCTTCTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

225

Amino Acids

25.18

Weight (kDa)

6.12

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 54 - 194 1.2e-23 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 298
AciI CCGC 2 cut(s) 298, 531
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 4 cut(s) 5, 92, 444, 487
AcuI CTGAAG 2 cut(s) 210, 404
AcvI CACGTG 1 cut(s) 647
AflII CTTAAG 1 cut(s) 671
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 2 cut(s) 356, 555
AluBI AGCT 6 cut(s) 66, 206, 254, 308, 400, 602
AluI AGCT 6 cut(s) 66, 206, 254, 308, 400, 602
Alw21I GWGCWC 2 cut(s) 402, 604
Alw26I GTCTC 1 cut(s) 539
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 2 cut(s) 230, 625
ApoI RAATTY 4 cut(s) 5, 92, 444, 487
AspLEI GCGC 2 cut(s) 100, 298
AspS9I GGNCC 2 cut(s) 14, 493
AsuC2I CCSGG 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 395
AvaII GGWCC 2 cut(s) 14, 493
BalI TGGCCA 1 cut(s) 232
BanII GRGCYC 2 cut(s) 402, 604
BbrPI CACGTG 1 cut(s) 647
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 2 cut(s) 402, 604
BccI CCATC 1 cut(s) 521
BcnI CCSGG 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 539
BfaI CTAG 1 cut(s) 182
BfrI CTTAAG 1 cut(s) 671
BglII AGATCT 1 cut(s) 662
BisI GCNGC 1 cut(s) 532
BlsI GCNGC 1 cut(s) 533
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 2 cut(s) 14, 493
BmgT120I GGNCC 2 cut(s) 14, 493
BmiI GGNNCC 2 cut(s) 15, 86
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 618
BpuEI CTTGAG 2 cut(s) 503, 563
BpuMI CCSGG 1 cut(s) 379
BsaAI YACGTR 2 cut(s) 76, 647
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 2 cut(s) 324, 466
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 171
BseMI GCAATG 2 cut(s) 324, 466
BseMII CTCAG 4 cut(s) 132, 300, 466, 603
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 2 cut(s) 167, 440
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 1 cut(s) 298
BshFI GGCC 2 cut(s) 232, 627
BsiHKAI GWGCWC 2 cut(s) 402, 604
BsiSI CCGG 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 539
BsnI GGCC 2 cut(s) 232, 627
Bso31I GGTCTC 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 402, 604
Bsp143I GATC 1 cut(s) 662
BspACI CCGC 2 cut(s) 298, 531
BspANI GGCC 2 cut(s) 232, 627
BspCNI CTCAG 4 cut(s) 131, 301, 465, 604
BspFNI CGCG 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 15, 86
BspTI CTTAAG 1 cut(s) 671
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 2 cut(s) 324, 466
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 1 cut(s) 662
Bst4CI ACNGT 3 cut(s) 130, 268, 415
Bst6I CTCTTC 1 cut(s) 672
BstAFI CTTAAG 1 cut(s) 671
BstBAI YACGTR 2 cut(s) 76, 647
BstDEI CTNAG 4 cut(s) 118, 309, 452, 612
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 298
BstHHI GCGC 2 cut(s) 100, 298
BstKTI GATC 1 cut(s) 665
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 1 cut(s) 662
BstMWI GCNNNNNNNGC 2 cut(s) 251, 314
BstSCI CCNGG 1 cut(s) 377
BstUI CGCG 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 662
BstYI RGATCY 1 cut(s) 662
BsuRI GGCC 2 cut(s) 232, 627
BtsCI GGATG 1 cut(s) 171
CaiI CAGNNNCTG 1 cut(s) 308
CfoI GCGC 2 cut(s) 100, 298
Cfr13I GGNCC 2 cut(s) 14, 493
CviAII CATG 1 cut(s) 81
CviJI RGCY 9 cut(s) 66, 206, 232, 254, 308, 400, 410, 602, 627
CviKI_1 RGCY 9 cut(s) 66, 206, 232, 254, 308, 400, 410, 602, 627
DdeI CTNAG 4 cut(s) 118, 309, 452, 612
DpnI GATC 1 cut(s) 664
DpnII GATC 1 cut(s) 662
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Ecl136II GAGCTC 2 cut(s) 400, 602
Eco24I GRGCYC 2 cut(s) 402, 604
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 2 cut(s) 14, 493
Eco53kI GAGCTC 2 cut(s) 400, 602
Eco57I CTGAAG 2 cut(s) 210, 404
Eco72I CACGTG 1 cut(s) 647
EcoICRI GAGCTC 2 cut(s) 400, 602
EcoO109I RGGNCCY 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 444
EcoT38I GRGCYC 2 cut(s) 402, 604
FaeI CATG 1 cut(s) 84
FaiI YATR 9 cut(s) 73, 82, 90, 164, 203, 335, 508, 563, 585
FatI CATG 1 cut(s) 80
Fnu4HI GCNGC 1 cut(s) 532
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 2 cut(s) 402, 604
Fsp4HI GCNGC 1 cut(s) 532
FspBI CTAG 1 cut(s) 182
GlaI GCGC 2 cut(s) 99, 297
GluI GCNGC 1 cut(s) 532
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 2 cut(s) 232, 627
HapII CCGG 1 cut(s) 378
HhaI GCGC 2 cut(s) 100, 298
Hin1II CATG 1 cut(s) 84
Hin6I GCGC 2 cut(s) 98, 296
HinP1I GCGC 2 cut(s) 98, 296
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 6 cut(s) 55, 149, 185, 551, 580, 593
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 3 cut(s) 343, 466, 650
Hpy188I TCNGA 6 cut(s) 121, 138, 190, 223, 455, 613
Hpy188III TCNNGA 4 cut(s) 356, 512, 542, 597
Hpy8I GTNNAC 3 cut(s) 343, 466, 650
HpyAV CCTTC 2 cut(s) 185, 371
HpyCH4III ACNGT 3 cut(s) 130, 268, 415
HpyCH4IV ACGT 3 cut(s) 75, 199, 646
HpyCH4V TGCA 4 cut(s) 245, 437, 644, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 314
HpyF3I CTNAG 4 cut(s) 118, 309, 452, 612
HpySE526I ACGT 3 cut(s) 75, 199, 646
Hsp92II CATG 1 cut(s) 84
HspAI GCGC 2 cut(s) 98, 296
Kzo9I GATC 1 cut(s) 662
LmnI GCTCC 2 cut(s) 599, 607
LpnPI CCDG 5 cut(s) 166, 214, 391, 407, 582
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 182
MaeII ACGT 3 cut(s) 75, 199, 646
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 664
MboI GATC 1 cut(s) 662
MboII GAAGA 4 cut(s) 98, 101, 410, 659
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 662
MhlI GDGCHC 2 cut(s) 402, 604
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 6 cut(s) 5, 92, 444, 487, 519, 633
MluNI TGGCCA 1 cut(s) 232
MlyI GAGTC 2 cut(s) 158, 589
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 7 cut(s) 185, 188, 217, 449, 461, 469, 506
Mox20I TGGCCA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 232
MseI TTAA 1 cut(s) 672
Msp20I TGGCCA 1 cut(s) 232
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 379
MunI CAATTG 1 cut(s) 633
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 251, 314
NciI CCSGG 1 cut(s) 379
NdeII GATC 1 cut(s) 662
NlaIII CATG 1 cut(s) 84
NlaIV GGNNCC 2 cut(s) 15, 86
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PfeI GAWTC 4 cut(s) 55, 185, 551, 593
PkrI GCNGC 1 cut(s) 533
PleI GAGTC 2 cut(s) 157, 588
PmaCI CACGTG 1 cut(s) 647
PmlI CACGTG 1 cut(s) 647
PpsI GAGTC 2 cut(s) 157, 588
Ppu21I YACGTR 2 cut(s) 76, 647
PpuMI RGGWCCY 1 cut(s) 14
Psp124BI GAGCTC 2 cut(s) 402, 604
Psp5II RGGWCCY 1 cut(s) 14
PspCI CACGTG 1 cut(s) 647
PspN4I GGNNCC 2 cut(s) 15, 86
PspPI GGNCC 2 cut(s) 14, 493
PspPPI RGGWCCY 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 1 cut(s) 662
SacI GAGCTC 2 cut(s) 402, 604
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 1 cut(s) 532
Sau3AI GATC 1 cut(s) 662
Sau96I GGNCC 2 cut(s) 14, 493
SchI GAGTC 2 cut(s) 158, 589
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 2 cut(s) 402, 604
SfaNI GCATC 1 cut(s) 424
SinI GGWCC 2 cut(s) 14, 493
SmlI CTYRAG 3 cut(s) 482, 542, 671
SmoI CTYRAG 3 cut(s) 482, 542, 671
Sse9I AATT 6 cut(s) 5, 92, 444, 487, 519, 633
SsiI CCGC 2 cut(s) 298, 531
SspMI CTAG 1 cut(s) 182
SstI GAGCTC 2 cut(s) 402, 604
StyD4I CCNGG 1 cut(s) 377
TaaI ACNGT 3 cut(s) 130, 268, 415
TaiI ACGT 3 cut(s) 78, 202, 649
TaqII GACCGA 1 cut(s) 563
TasI AATT 6 cut(s) 5, 92, 444, 487, 519, 633
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 4 cut(s) 55, 185, 551, 593
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TspDTI ATGAA 3 cut(s) 17, 405, 531
TspGWI ACGGA 1 cut(s) 594
Vha464I CTTAAG 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 14, 493
XapI RAATTY 4 cut(s) 5, 92, 444, 487
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.