Rorug05G0006500

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008972
Physical Location & Seq
Reverse (-)
392260 .. 393197
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0006500.1

Sequence Viewer

Length: 597 bp
ATGAAAATGTCCACACTGAGCAGCTCCCAATTACACCTCTTGAAATGCACCGCTACCACTCTAGCAAAATCAACCTCCTCATCAAATCCTTCATATCGGTTTCTCAATCCCATCTCATCATCACAACAAAAACACCCTCCTTCATATCCAACTATATCATCGGCATCTTTACCTGCTAGAAAATGCAACATTGGAAAAGCCAGTAGTCCCAAATGCCTTGAAAAGTCATCCAAACTTTCTACAGGAGTTGATAATGGGAACTTACAATCATCAAGGTTTTTGATAATGGGAGCTGTTTCTGTGGGAGTTGCGATGCTGCTGATGGGGATTGATGATCAGCAAAAGGCAATGGCTTTGGGACCAGAAGGTCCACTGATGGAAGAGTTTTGGGACAATGTAAGGAGATATGCACTGTATGCTCTCACAGTGAGTACAGGTGCTCTCTACACTGTCTTCCTCCCTATATACGAGTTGTTGAAGAATCCCATCTCTGCAGTTCTCGTTTTGGTCATTTTAGGGGGAGGTTTCTTCATTCTTACCCAAGTCGTTTCAGCCATGATTGGTGCCACAGACTTTGATTATCAATACCAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

198

Amino Acids

21.41

Weight (kDa)

9.11

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF751 PF05421 129 - 188 4.4e-21 Protein of unknown function (DUF751)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 366
Acc36I ACCTGC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 563
AciI CCGC 1 cut(s) 51
AfaI GTAC 1 cut(s) 433
AgsI TTSAA 3 cut(s) 43, 221, 478
AluBI AGCT 2 cut(s) 24, 293
AluI AGCT 2 cut(s) 24, 293
Alw21I GWGCWC 1 cut(s) 442
ApeKI GCWGC 2 cut(s) 21, 316
AspS9I GGNCC 2 cut(s) 359, 368
AvaII GGWCC 2 cut(s) 359, 368
BanI GGYRCC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 33, 303
BccI CCATC 4 cut(s) 119, 316, 370, 494
BclI TGATCA 1 cut(s) 334
BfaI CTAG 2 cut(s) 62, 177
BfmI CTRYAG 2 cut(s) 240, 492
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 2 cut(s) 22, 317
BlsI GCNGC 2 cut(s) 23, 318
Bme18I GGWCC 2 cut(s) 359, 368
BmgT120I GGNCC 2 cut(s) 359, 368
BmiI GGNNCC 2 cut(s) 360, 565
BmsI GCATC 2 cut(s) 173, 303
BpiI GAAGAC 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 354
BseGI GGATG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 8
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 33, 303
BshNI GGYRCC 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 442
BslFI GGGAC 3 cut(s) 192, 372, 404
BsmFI GGGAC 3 cut(s) 192, 372, 404
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 360, 565
BspMAI CTGCAG 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 354
BsrI ACTGG 1 cut(s) 201
BssMI GATC 1 cut(s) 334
Bst4CI ACNGT 3 cut(s) 414, 427, 451
Bst6I CTCTTC 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 416
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstSFI CTRYAG 2 cut(s) 240, 492
BstV1I GCAGC 2 cut(s) 33, 303
BstV2I GAAGAC 1 cut(s) 445
BtgZI GCGATG 1 cut(s) 326
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 5 cut(s) 14, 371, 410, 432, 447
BveI ACCTGC 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 359, 368
Csp6I GTAC 1 cut(s) 432
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 1 cut(s) 556
CviJI RGCY 5 cut(s) 24, 200, 293, 353, 554
CviKI_1 RGCY 5 cut(s) 24, 200, 293, 353, 554
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DrdI GACNNNNNNGTC 1 cut(s) 366
DseDI GACNNNNNNGTC 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 359, 368
FaeI CATG 1 cut(s) 559
FaiI YATR 8 cut(s) 94, 145, 155, 408, 417, 464, 466, 557
FaqI GGGAC 3 cut(s) 192, 372, 404
FatI CATG 1 cut(s) 555
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 22, 317
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 2 cut(s) 22, 317
FspBI CTAG 2 cut(s) 62, 177
GluI GCNGC 2 cut(s) 22, 317
Hin1II CATG 1 cut(s) 559
HinfI GANTC 1 cut(s) 481
Hpy166II GTNNAC 2 cut(s) 12, 371
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 2 cut(s) 12, 371
HpyAV CCTTC 3 cut(s) 99, 150, 359
HpyCH4III ACNGT 3 cut(s) 414, 427, 451
HpyCH4V TGCA 4 cut(s) 48, 186, 410, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 1 cut(s) 559
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 2 cut(s) 29, 290
LpnPI CCDG 5 cut(s) 186, 214, 228, 375, 420
Lsp1109I GCAGC 2 cut(s) 33, 303
LweI GCATC 2 cut(s) 173, 303
MaeI CTAG 2 cut(s) 62, 177
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 4 cut(s) 392, 445, 490, 520
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 6 cut(s) 47, 85, 88, 147, 467, 515
MseI TTAA 1 cut(s) 595
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeII GATC 1 cut(s) 334
NlaIII CATG 1 cut(s) 559
NlaIV GGNNCC 2 cut(s) 360, 565
PfeI GAWTC 1 cut(s) 481
PkrI GCNGC 2 cut(s) 23, 318
PspN4I GGNNCC 2 cut(s) 360, 565
PspPI GGNCC 2 cut(s) 359, 368
PstI CTGCAG 1 cut(s) 496
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 595
SatI GCNGC 2 cut(s) 22, 317
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 2 cut(s) 359, 368
SduI GDGCHC 1 cut(s) 442
SetI ASST 9 cut(s) 26, 39, 77, 175, 278, 295, 370, 439, 526
SfaNI GCATC 2 cut(s) 173, 303
SfcI CTRYAG 2 cut(s) 240, 492
SinI GGWCC 2 cut(s) 359, 368
Sse9I AATT 1 cut(s) 29
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 593
SspMI CTAG 2 cut(s) 62, 177
TaaI ACNGT 3 cut(s) 414, 427, 451
TasI AATT 1 cut(s) 29
TatI WGTACW 1 cut(s) 431
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 1 cut(s) 595
Tru9I TTAA 1 cut(s) 595
TscAI CASTG 5 cut(s) 21, 378, 417, 432, 454
TseI GCWGC 2 cut(s) 21, 316
TspDTI ATGAA 4 cut(s) 17, 81, 132, 520
TspRI CASTG 5 cut(s) 21, 378, 417, 432, 454
VpaK11BI GGWCC 2 cut(s) 359, 368
XspI CTAG 2 cut(s) 62, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.