Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003892.1

Orthogroup ID

OG0008972

Physical Location & Seq

Genomic Coordinates Forward (+)

96733 .. 99353

Gene Structure 2621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003892.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggagtcatgccctaccataaagaacatcctcctcctagattctgaaggaaaacgtatagctgtcaagtattattcagaggactggccaacgaatagtgcaaaagaagcttttgagaaaactgttttcactaaaactcaaaagacaaatgcgcggacagaagctgagatagcaatgtttgagaacagcatagtagtttacaagtttgttcaagatcttcacttttttgttaccgggggtgataatgaaaatgagctcattttagccacagttcttcagggattttttgatgcagttggaattctcctcagaggcaatgtggacaaaaaggaggcacttgagaatttggacctcattctactatgccttgatgaaattgttgatggcggcattgttcttgagaccgattcaaatgttatagcaagtaaggttgcgagtcatagtattgattctggagctccgttatctgagcagacaataggccaagcgcttgctactgcacgtgaacattttgcaagatcccttcttaatatcgcatttgctaaaattgcgtactgtcagaatttatcacttcctgctgaattcatctcctcttatagaactcaaatgatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

204

Amino Acids

22.54

Weight (kDa)

4.78

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60970
fragaria_vesca	FvH4_3g06280
malus_domestica	MD05G1290800.v1.1 MD10G1266600.v1.1 MD16G1203300.v1.1
prunus_persica	Prupe.4G074900_v2.0.a1 Prupe.4G074900_v2.0.a1
pyrus_communis	pycom10g22270
rosa_chinensis	RchiOBHm_Chr5g0013031
rosa_laevigata	RLG00000031978
rosa_multiflora	Rmu_sc0003304.1_g000036 Rmu_sc0003892.1_g000019 Rmu_sc0037731.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063540
rosa_rugosa	Rorug01G0350300 Rorug05G0006400 Rorug05G0006500 Rorug05G0006600 Rorug05G0006700 Rorug05G0006700
rosa_samantha	Rh5DG096200
rosa_wichuraiana	Rw5G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	154
AciI	CCGC	2 cut(s)	154, 387
AclWI	GGATC	1 cut(s)	513
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	4 cut(s)	300, 343, 562, 581
AcuI	CTGAAG	2 cut(s)	66, 260
AcvI	CACGTG	1 cut(s)	503
AfaI	GTAC	1 cut(s)	554
AfeI	AGCGCT	1 cut(s)	489
AgsI	TTSAA	2 cut(s)	212, 411
AluBI	AGCT	5 cut(s)	62, 110, 164, 256, 458
AluI	AGCT	5 cut(s)	62, 110, 164, 256, 458
Alw21I	GWGCWC	2 cut(s)	258, 460
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	513
AlwNI	CAGNNNCTG	1 cut(s)	164
Aor51HI	AGCGCT	1 cut(s)	489
AoxI	GGCC	2 cut(s)	86, 481
ApoI	RAATTY	4 cut(s)	300, 343, 562, 581
AspLEI	GCGC	2 cut(s)	154, 490
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	258, 460
BbrPI	CACGTG	1 cut(s)	503
Bbv12I	GWGCWC	2 cut(s)	258, 460
BccI	CCATC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	491
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	359, 419
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	2 cut(s)	180, 322
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	27
BseMI	GCAATG	2 cut(s)	180, 322
BseMII	CTCAG	3 cut(s)	156, 322, 459
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	3 cut(s)	23, 296, 580
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	88, 483
BsiHKAI	GWGCWC	2 cut(s)	258, 460
BsiSI	CCGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	88, 483
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	258, 460
Bsp143I	GATC	2 cut(s)	214, 518
BspACI	CCGC	2 cut(s)	154, 387
BspANI	GGCC	2 cut(s)	88, 483
BspCNI	CTCAG	3 cut(s)	157, 321, 460
BspFNI	CGCG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	513
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	180, 322
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	214, 518
Bst4CI	ACNGT	3 cut(s)	124, 271, 557
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	165, 308, 468
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	2 cut(s)	154, 490
BstKTI	GATC	2 cut(s)	217, 521
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	214, 518
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 170, 548
BstSCI	CCNGG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	214, 518
BstYI	RGATCY	2 cut(s)	214, 518
BsuRI	GGCC	2 cut(s)	88, 483
BtsCI	GGATG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	492
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	2 cut(s)	154, 490
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	8 cut(s)	62, 88, 110, 164, 256, 266, 458, 483
CviKI_1	RGCY	8 cut(s)	62, 88, 110, 164, 256, 266, 458, 483
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	3 cut(s)	165, 308, 468
DpnI	GATC	2 cut(s)	216, 520
DpnII	GATC	2 cut(s)	214, 518
EaeI	YGGCCR	1 cut(s)	86
Ecl136II	GAGCTC	2 cut(s)	256, 458
Eco24I	GRGCYC	2 cut(s)	258, 460
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	349
Eco47III	AGCGCT	1 cut(s)	489
Eco53kI	GAGCTC	2 cut(s)	256, 458
Eco57I	CTGAAG	2 cut(s)	66, 260
Eco72I	CACGTG	1 cut(s)	503
EcoICRI	GAGCTC	2 cut(s)	256, 458
EcoRI	GAATTC	2 cut(s)	300, 581
EcoT38I	GRGCYC	2 cut(s)	258, 460
FaeI	CATG	1 cut(s)	12
FaiI	YATR	8 cut(s)	10, 20, 59, 191, 364, 419, 441, 597
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	2 cut(s)	258, 460
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	2 cut(s)	153, 489
GluI	GCNGC	1 cut(s)	388
GsuI	CTGGAG	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	88, 483
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	2 cut(s)	154, 490
Hin1II	CATG	1 cut(s)	12
Hin6I	GCGC	2 cut(s)	152, 488
HinP1I	GCGC	2 cut(s)	152, 488
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	5 cut(s)	5, 41, 407, 436, 449
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	199, 322, 506
Hpy188I	TCNGA	5 cut(s)	46, 79, 311, 469, 561
Hpy188III	TCNNGA	3 cut(s)	212, 398, 453
Hpy8I	GTNNAC	3 cut(s)	199, 322, 506
HpyAV	CCTTC	2 cut(s)	41, 533
HpyCH4III	ACNGT	3 cut(s)	124, 271, 557
HpyCH4IV	ACGT	2 cut(s)	55, 502
HpyCH4V	TGCA	4 cut(s)	101, 293, 500, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 170, 548
HpyF3I	CTNAG	3 cut(s)	165, 308, 468
HpySE526I	ACGT	2 cut(s)	55, 502
Hsp92II	CATG	1 cut(s)	12
HspAI	GCGC	2 cut(s)	152, 488
Kzo9I	GATC	2 cut(s)	214, 518
LmnI	GCTCC	2 cut(s)	455, 463
LpnPI	CCDG	5 cut(s)	70, 247, 263, 438, 588
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	2 cut(s)	55, 502
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	216, 520
MboI	GATC	2 cut(s)	214, 518
MboII	GAAGA	2 cut(s)	209, 266
MflI	RGATCY	2 cut(s)	214, 518
MhlI	GDGCHC	2 cut(s)	258, 460
MlsI	TGGCCA	1 cut(s)	88
MluCI	AATT	6 cut(s)	300, 343, 375, 546, 562, 581
MluNI	TGGCCA	1 cut(s)	88
MlyI	GAGTC	2 cut(s)	14, 445
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	8 cut(s)	41, 44, 73, 305, 317, 325, 362, 601
Mox20I	TGGCCA	1 cut(s)	88
MscI	TGGCCA	1 cut(s)	88
MseI	TTAA	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	88
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	107, 170, 548
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	2 cut(s)	214, 518
NlaIII	CATG	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	41, 407, 449
PkrI	GCNGC	1 cut(s)	389
PleI	GAGTC	2 cut(s)	13, 444
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
PpsI	GAGTC	2 cut(s)	13, 444
Ppu21I	YACGTR	1 cut(s)	503
Psp124BI	GAGCTC	2 cut(s)	258, 460
PspCI	CACGTG	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	214, 518
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SacI	GAGCTC	2 cut(s)	258, 460
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	2 cut(s)	214, 518
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	2 cut(s)	14, 445
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	258, 460
SetI	ASST	9 cut(s)	58, 64, 112, 166, 258, 354, 432, 460, 505
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	338, 398
SmoI	CTYRAG	2 cut(s)	338, 398
Sse9I	AATT	6 cut(s)	300, 343, 375, 546, 562, 581
SsiI	CCGC	2 cut(s)	154, 387
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	2 cut(s)	258, 460
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	3 cut(s)	124, 271, 557
TaiI	ACGT	2 cut(s)	58, 505
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	6 cut(s)	300, 343, 375, 546, 562, 581
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	3 cut(s)	41, 407, 449
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TspDTI	ATGAA	3 cut(s)	261, 387, 574
TspGWI	ACGGA	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	4 cut(s)	300, 343, 562, 581
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.