Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003304.1

Orthogroup ID

OG0008972

Physical Location & Seq

Genomic Coordinates Forward (+)

166734 .. 167093

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003304.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgtttgagaacagcatagtagtttacaagtttgttcaagacctttacttttttgttaccgggggtaataatgaaaatgagctcattttagccacagttcttcaggggttttttgatgcagttggaattctcctcagaggcaatgtggataaaaaggaggcacttgagtatttggacctcattctactatgccttgatgaaattgttgatggcagcattgttcttgagaccgattcaaatgttatagcaagtaaggttgcgagtcatagtattgattctggagctccgttatctgagcaaacaataggccaagcaattgctactgcatgcgaacattttgcaagatctcttcttaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

119

Amino Acids

12.97

Weight (kDa)

4.33

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60970
fragaria_vesca	FvH4_3g06280
malus_domestica	MD05G1290800.v1.1 MD10G1266600.v1.1 MD16G1203300.v1.1
prunus_persica	Prupe.4G074900_v2.0.a1 Prupe.4G074900_v2.0.a1
pyrus_communis	pycom10g22270
rosa_chinensis	RchiOBHm_Chr5g0013031
rosa_laevigata	RLG00000031978
rosa_multiflora	Rmu_sc0003304.1_g000036 Rmu_sc0003892.1_g000019 Rmu_sc0037731.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063540
rosa_rugosa	Rorug01G0350300 Rorug05G0006400 Rorug05G0006500 Rorug05G0006600 Rorug05G0006700 Rorug05G0006700
rosa_samantha	Rh5DG096200
rosa_wichuraiana	Rw5G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	86
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	38, 237
AluBI	AGCT	2 cut(s)	82, 284
AluI	AGCT	2 cut(s)	82, 284
Alw21I	GWGCWC	2 cut(s)	84, 286
Alw26I	GTCTC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	175
BanII	GRGCYC	2 cut(s)	84, 286
Bbv12I	GWGCWC	2 cut(s)	84, 286
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	1 cut(s)	203
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	221
BfrI	CTTAAG	1 cut(s)	353
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	185, 245
BpuMI	CCSGG	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	148, 285
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	84, 286
BsiSI	CCGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	84, 286
Bsp143I	GATC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	147, 286
BspTI	CTTAAG	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	134, 294
BstKTI	GATC	1 cut(s)	347
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	175
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	4 cut(s)	82, 92, 284, 309
CviKI_1	RGCY	4 cut(s)	82, 92, 284, 309
DdeI	CTNAG	2 cut(s)	134, 294
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	2 cut(s)	82, 284
Eco24I	GRGCYC	2 cut(s)	84, 286
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	2 cut(s)	82, 284
Eco57I	CTGAAG	1 cut(s)	86
EcoICRI	GAGCTC	2 cut(s)	82, 284
EcoRI	GAATTC	1 cut(s)	126
EcoT38I	GRGCYC	2 cut(s)	84, 286
FaeI	CATG	1 cut(s)	330
FaiI	YATR	5 cut(s)	17, 190, 245, 267, 328
FatI	CATG	1 cut(s)	326
Fnu4HI	GCNGC	1 cut(s)	214
FriOI	GRGCYC	2 cut(s)	84, 286
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	1 cut(s)	330
HinfI	GANTC	3 cut(s)	233, 262, 275
HpaII	CCGG	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	137, 295
Hpy188III	TCNNGA	3 cut(s)	38, 224, 279
Hpy8I	GTNNAC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	119, 326, 341
HpyF3I	CTNAG	2 cut(s)	134, 294
Hsp92II	CATG	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	344
LmnI	GCTCC	2 cut(s)	281, 289
LpnPI	CCDG	3 cut(s)	73, 89, 264
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MboII	GAAGA	2 cut(s)	92, 341
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	84, 286
MluCI	AATT	3 cut(s)	126, 201, 315
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	131, 143, 151, 188
MseI	TTAA	1 cut(s)	354
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	315
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	1 cut(s)	344
NlaIII	CATG	1 cut(s)	330
NspI	RCATGY	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	233, 275
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Psp124BI	GAGCTC	2 cut(s)	84, 286
PspPI	GGNCC	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	344
SacI	GAGCTC	2 cut(s)	84, 286
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	1 cut(s)	344
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	2 cut(s)	84, 286
SetI	ASST	5 cut(s)	45, 84, 180, 258, 286
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	3 cut(s)	164, 224, 353
SmoI	CTYRAG	3 cut(s)	164, 224, 353
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	3 cut(s)	126, 201, 315
SstI	GAGCTC	2 cut(s)	84, 286
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	97
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	3 cut(s)	126, 201, 315
TfiI	GAWTC	2 cut(s)	233, 275
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseI	GCWGC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	87, 213
TspGWI	ACGGA	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	126
XceI	RCATGY	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.