Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008972

Physical Location & Seq

Genomic Coordinates Reverse (-)

3669660 .. 3672814

Gene Structure 3155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G074900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAGTCGTGCCCTTCCATTAAGAACATCCTCCTCCTCGATTCTGAAGGGAAGCGTGTGGCTGTCAAGTATTATTCAGAGGACTGGCCAACAAATAGTGCAAAGGAATCTTTTGAGAAAGCTGTATTTACTAAAACTCAAAAGACAAATGCACGGACAGAAGCCGAGATAGCAATGTTTGAGAACACCATTGTAGTCTACAAGTTTGTTCAAGACCTTCACTTTTTTGTTACTGGGGGTGACAATGAAAATGAGCTCATTTTATCCACAGTTCTCCAGGGATTTTTCGATGCAGTTGGCATTCTCCTTAGAGGCAATGTAGACAAGAAGGAGGCACTTGAGAATTTGGATCTCATTTTATTATGCCTTGATGAAATTGTTGATGGCGGTATTGTCCTCGAGACCGATTCAAATGTTATAGCAAGCAAGGTTGCAAGTCATAGCATTGATGCTGGAGCTCCATTGTCCGAGCAGACAATTAGTCAAGCTTTGGCCACTGCACGCGAGCATCTTGCTAGATCACTTCTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

178

Amino Acids

19.46

Weight (kDa)

4.75

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60970
fragaria_vesca	FvH4_3g06280
malus_domestica	MD05G1290800.v1.1 MD10G1266600.v1.1 MD16G1203300.v1.1
prunus_persica	Prupe.4G074900_v2.0.a1 Prupe.4G074900_v2.0.a1
pyrus_communis	pycom10g22270
rosa_chinensis	RchiOBHm_Chr5g0013031
rosa_laevigata	RLG00000031978
rosa_multiflora	Rmu_sc0003304.1_g000036 Rmu_sc0003892.1_g000019 Rmu_sc0037731.1_g000003
rosa_roxburghii	Rroxscaffold_1G00063540
rosa_rugosa	Rorug01G0350300 Rorug05G0006400 Rorug05G0006500 Rorug05G0006600 Rorug05G0006700 Rorug05G0006700
rosa_samantha	Rh5DG096200
rosa_wichuraiana	Rw5G008800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	198, 321
AccII	CGCG	1 cut(s)	504
AciI	CCGC	1 cut(s)	387
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	2 cut(s)	86, 492
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	212, 411
AhdI	GACNNNNNGTC	1 cut(s)	480
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	4 cut(s)	122, 256, 458, 488
AluI	AGCT	4 cut(s)	122, 256, 458, 488
Alw21I	GWGCWC	2 cut(s)	258, 460
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	357
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	86, 492
ApoI	RAATTY	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	14
BalI	TGGCCA	2 cut(s)	88, 494
BanII	GRGCYC	2 cut(s)	258, 460
Bbv12I	GWGCWC	2 cut(s)	258, 460
BccI	CCATC	1 cut(s)	377
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	278
BmeRI	GACNNNNNGTC	1 cut(s)	480
BmeT110I	CYCGRG	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	278
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	3 cut(s)	280, 439, 517
BmuI	ACTGGG	1 cut(s)	243
BpmI	CTGGAG	2 cut(s)	260, 474
BpuEI	CTTGAG	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	277
Bse1I	ACTGG	2 cut(s)	89, 238
Bse3DI	GCAATG	2 cut(s)	180, 322
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	27
BseMI	GCAATG	2 cut(s)	180, 322
BseNI	ACTGG	2 cut(s)	89, 238
BseRI	GAGGAG	2 cut(s)	23, 26
BseSI	GKGCMC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	2 cut(s)	88, 494
BsiHKAI	GWGCWC	2 cut(s)	258, 460
BsiHKCI	CYCGRG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	88, 494
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	3 cut(s)	14, 258, 460
Bsp143I	GATC	2 cut(s)	349, 518
BspACI	CCGC	1 cut(s)	387
BspANI	GGCC	2 cut(s)	88, 494
BspFNI	CGCG	1 cut(s)	504
BspPI	GGATC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	180, 322
BsrI	ACTGG	2 cut(s)	89, 238
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	349, 518
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	271
BstC8I	GCNNGC	3 cut(s)	424, 502, 506
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	504
BstKTI	GATC	2 cut(s)	352, 521
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	349, 518
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	88, 494
BtsCI	GGATG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	3 cut(s)	424, 502, 506
CviJI	RGCY	8 cut(s)	62, 88, 122, 164, 256, 458, 488, 494
CviKI_1	RGCY	8 cut(s)	62, 88, 122, 164, 256, 458, 488, 494
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	351, 520
DpnII	GATC	2 cut(s)	349, 518
DriI	GACNNNNNGTC	1 cut(s)	480
EaeI	YGGCCR	2 cut(s)	86, 492
Eam1105I	GACNNNNNGTC	1 cut(s)	480
Ecl136II	GAGCTC	2 cut(s)	256, 458
Eco24I	GRGCYC	2 cut(s)	258, 460
Eco31I	GGTCTC	1 cut(s)	395
Eco53kI	GAGCTC	2 cut(s)	256, 458
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	398
EcoICRI	GAGCTC	2 cut(s)	256, 458
EcoRII	CCWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	258, 460
FaiI	YATR	3 cut(s)	364, 419, 441
FblI	GTMKAC	2 cut(s)	198, 321
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	2 cut(s)	258, 460
FspBI	CTAG	1 cut(s)	516
GsuI	CTGGAG	2 cut(s)	260, 474
HaeIII	GGCC	2 cut(s)	88, 494
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	4 cut(s)	5, 41, 107, 407
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	199, 322
Hpy188I	TCNGA	3 cut(s)	46, 79, 469
Hpy188III	TCNNGA	2 cut(s)	212, 400
Hpy8I	GTNNAC	2 cut(s)	199, 322
HpyAV	CCTTC	4 cut(s)	24, 41, 227, 322
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	5 cut(s)	101, 152, 293, 434, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	349, 518
LmnI	GCTCC	2 cut(s)	455, 463
LpnPI	CCDG	5 cut(s)	70, 219, 263, 290, 438
LweI	GCATC	3 cut(s)	280, 439, 517
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	2 cut(s)	229, 239
MalI	GATC	2 cut(s)	351, 520
MboI	GATC	2 cut(s)	349, 518
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	3 cut(s)	14, 258, 460
MlsI	TGGCCA	2 cut(s)	88, 494
MluCI	AATT	3 cut(s)	343, 375, 477
MluNI	TGGCCA	2 cut(s)	88, 494
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	7 cut(s)	41, 44, 47, 73, 305, 325, 407
Mox20I	TGGCCA	2 cut(s)	88, 494
MscI	TGGCCA	2 cut(s)	88, 494
MseI	TTAA	2 cut(s)	21, 528
Msp20I	TGGCCA	2 cut(s)	88, 494
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	2 cut(s)	349, 518
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	398
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	41, 107, 407
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	2 cut(s)	258, 460
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	349
SacI	GAGCTC	2 cut(s)	258, 460
SaqAI	TTAA	2 cut(s)	21, 528
Sau3AI	GATC	2 cut(s)	349, 518
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	3 cut(s)	14, 258, 460
SetI	ASST	6 cut(s)	124, 219, 258, 432, 460, 490
SfaNI	GCATC	3 cut(s)	280, 439, 517
Sfr274I	CTCGAG	1 cut(s)	398
SlaI	CTCGAG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	338, 398
SmoI	CTYRAG	2 cut(s)	338, 398
Sse9I	AATT	3 cut(s)	343, 375, 477
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	2 cut(s)	258, 460
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	3 cut(s)	39, 288, 399
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	3 cut(s)	343, 375, 477
TfiI	GAWTC	3 cut(s)	41, 107, 407
Tru1I	TTAA	2 cut(s)	21, 528
Tru9I	TTAA	2 cut(s)	21, 528
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	261, 387
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	502
XapI	RAATTY	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	398
XmiI	GTMKAC	2 cut(s)	198, 321
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.