Rorug01G0350300

Coatomer subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001015
Physical Location & Seq
Forward (+)
46787725 .. 46790261
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0350300.1

Sequence Viewer

Length: 879 bp
ATGGCGGTTCTGAGCCGCGTTCTGAGACTAAGAGCGGCGGGAGTAGACCGCTTCGCAGTCCGGAGCTTCCGGTCTTCGTCGTGGCGAAATTCCGAAATTGACCCCAAGGCGGCGGCGGCGTCGCAGCAGCTCGGGGAAAAGGCGCTTCCTTTACAGCGAGACGTCAAGGACAGAAATGTCCAGTGGGTTTTCCTCGGCTGCCCGGGCGTCGGCAAAGGCACCTACGCGTCTAAACTCTCGACTCTGCTCGGCGTGCCTCATATTGCGACCGGCGATCTCGTCCGCGATGAGCTTTCCTCTTCCGGTCCGCTCGCCAAGCAGCTTGAGGAGGTTGTAAATCAAGGCAAATTGGTTTCGGATGAGATTATAATAAACTTGCTGTCCAAGCGTCTTGAAGCTAGCTCAGCTAAGGGTGAAACTGGCTTTATTCTTGATGGTTTCCCTCGCACAATTCGACAGGCGGAAATTTTAGAGGGAGTTACTGAAATTGACTTGGTAATCAACCTAAAGCTTCGGGAAGAGGCTTTGCTTGCCAAGTGCCTTGGAAGAAGGATTTGCAGTGAGTGTGGAGGAAATTACAATGTTGCCAGCATTGATATTAAAGCTGAGGAAGGGGACCCTGGCATGTACATGTCTCCACTTCTTCCACCTCCACATTGTGCATCAAAGCTTATCTCGCGATCCGATGACACGGAAGAAGTTGTTAAGAGACGACTACGTATATATAATGAAATGAGTCAACCTGTGGAGGAGTTCTACCGCAGTCGGGGAAAATTGTTAGAGTTTGATCTTCCTGGAGGGATTCCAGAATCCTGGCCAAAGCTACTTCGAGCTTTAAATCTGGAAGACCATGACGACAAACAGTCTGCCGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

292

Amino Acids

32.15

Weight (kDa)

6.38

Isoelectric Point (pI)

63.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 65 - 257 2.6e-39 Adenylate kinase
AAA_17 PF13207 65 - 184 1.5e-21 AAA domain
AAA_18 PF13238 65 - 183 2.5e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AasI GACNNNNNNGTC 1 cut(s) 176
AatII GACGTC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 218
AccBSI CCGCTC 2 cut(s) 35, 310
AccI GTMKAC 1 cut(s) 45
AccII CGCG 4 cut(s) 18, 227, 285, 679
AccIII TCCGGA 1 cut(s) 60
AclWI GGATC 1 cut(s) 675
AcoI YGGCCR 1 cut(s) 815
AcsI RAATTY 2 cut(s) 88, 465
AcyI GRCGYC 3 cut(s) 119, 162, 207
AdeI CACNNNGTG 1 cut(s) 659
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 3 cut(s) 109, 209, 766
AflIII ACRYGT 2 cut(s) 225, 630
AgsI TTSAA 1 cut(s) 395
AhdI GACNNNNNGTC 1 cut(s) 862
AjnI CCWGG 3 cut(s) 619, 793, 812
Alw26I GTCTC 4 cut(s) 19, 153, 639, 703
AlwI GGATC 1 cut(s) 675
Ama87I CYCGRG 2 cut(s) 131, 202
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 1 cut(s) 815
ApeKI GCWGC 5 cut(s) 124, 127, 198, 319, 872
ApoI RAATTY 2 cut(s) 88, 465
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 305, 616
AsuC2I CCSGG 2 cut(s) 203, 204
AsuHPI GGTGA 1 cut(s) 425
AsuNHI GCTAGC 1 cut(s) 398
AvaI CYCGRG 2 cut(s) 131, 202
AvaII GGWCC 2 cut(s) 305, 616
BalI TGGCCA 1 cut(s) 817
BanI GGYRCC 1 cut(s) 218
BbsI GAAGAC 2 cut(s) 66, 852
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 4 cut(s) 136, 139, 185, 331
BccI CCATC 1 cut(s) 428
BciT130I CCWGG 3 cut(s) 621, 795, 814
BcnI CCSGG 2 cut(s) 203, 204
BcoDI GTCTC 4 cut(s) 19, 153, 639, 703
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 146
BlpI GCTNAGC 1 cut(s) 403
Bme1390I CCNGG 5 cut(s) 203, 204, 621, 795, 814
Bme18I GGWCC 2 cut(s) 305, 616
BmeRI GACNNNNNGTC 1 cut(s) 862
BmeT110I CYCGRG 2 cut(s) 131, 202
BmgT120I GGNCC 2 cut(s) 305, 616
BmiI GGNNCC 3 cut(s) 220, 617, 618
BmrFI CCNGG 5 cut(s) 203, 204, 621, 795, 814
BmsI GCATC 1 cut(s) 671
BmtI GCTAGC 1 cut(s) 402
BpiI GAAGAC 2 cut(s) 66, 852
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 816
Bpu10I CCTNAGC 2 cut(s) 408, 606
Bpu1102I GCTNAGC 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 2 cut(s) 203, 204
BsaAI YACGTR 1 cut(s) 719
BsaHI GRCGYC 3 cut(s) 119, 162, 207
BsaJI CCNNGG 5 cut(s) 105, 193, 202, 541, 619
BsaWI WCCGGW 3 cut(s) 60, 69, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 209, 766
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 2 cut(s) 181, 424
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 3 cut(s) 621, 795, 814
BseDI CCNNGG 5 cut(s) 105, 193, 202, 541, 619
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 3 cut(s) 109, 209, 766
BseMII CTCAG 3 cut(s) 14, 417, 597
BseNI ACTGG 2 cut(s) 181, 424
BseRI GAGGAG 2 cut(s) 341, 764
BseXI GCAGC 4 cut(s) 136, 139, 185, 331
Bsh1236I CGCG 4 cut(s) 18, 227, 285, 679
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 817
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 270
BsiHKCI CYCGRG 2 cut(s) 131, 202
BsiSI CCGG 5 cut(s) 61, 70, 203, 270, 303
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 3 cut(s) 109, 209, 766
BsmAI GTCTC 4 cut(s) 19, 153, 639, 703
BsmBI CGTCTC 2 cut(s) 153, 703
BsmFI GGGAC 1 cut(s) 629
BsnI GGCC 1 cut(s) 817
BsoBI CYCGRG 2 cut(s) 131, 202
Bsp13I TCCGGA 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 3 cut(s) 274, 680, 787
Bsp1720I GCTNAGC 1 cut(s) 403
Bsp68I TCGCGA 1 cut(s) 679
BspANI GGCC 1 cut(s) 817
BspCNI CTCAG 3 cut(s) 15, 416, 598
BspEI TCCGGA 1 cut(s) 60
BspFNI CGCG 4 cut(s) 18, 227, 285, 679
BspLI GGNNCC 3 cut(s) 220, 617, 618
BspOI GCTAGC 1 cut(s) 402
BspPI GGATC 1 cut(s) 675
BspT107I GGYRCC 1 cut(s) 218
BsrBI CCGCTC 2 cut(s) 35, 310
BsrFI RCCGGY 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 2 cut(s) 181, 424
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 5 cut(s) 105, 193, 202, 541, 619
BssMI GATC 3 cut(s) 274, 680, 787
BssNI GRCGYC 3 cut(s) 119, 162, 207
BssT1I CCWWGG 2 cut(s) 105, 541
Bst2UI CCWGG 3 cut(s) 621, 795, 814
Bst4CI ACNGT 1 cut(s) 864
Bst6I CTCTTC 2 cut(s) 304, 513
BstACI GRCGYC 3 cut(s) 119, 162, 207
BstAUI TGTACA 1 cut(s) 627
BstBAI YACGTR 1 cut(s) 719
BstC8I GCNNGC 5 cut(s) 254, 312, 400, 531, 589
BstDEI CTNAG 6 cut(s) 11, 23, 29, 403, 408, 606
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 4 cut(s) 18, 227, 285, 679
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 3 cut(s) 277, 683, 790
BstMAI GTCTC 4 cut(s) 19, 153, 639, 703
BstMBI GATC 3 cut(s) 274, 680, 787
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 8 cut(s) 116, 204, 253, 316, 385, 404, 530, 676
BstNI CCWGG 3 cut(s) 621, 795, 814
BstNSI RCATGY 2 cut(s) 628, 634
BstSCI CCNGG 5 cut(s) 201, 202, 619, 793, 812
BstSNI TACGTA 1 cut(s) 719
BstUI CGCG 4 cut(s) 18, 227, 285, 679
BstV1I GCAGC 4 cut(s) 136, 139, 185, 331
BstV2I GAAGAC 2 cut(s) 66, 852
BstXI CCANNNNNNTGG 1 cut(s) 813
BsuRI GGCC 1 cut(s) 817
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 2 cut(s) 188, 565
BtuMI TCGCGA 1 cut(s) 679
Cac8I GCNNGC 5 cut(s) 254, 312, 400, 531, 589
CfoI GCGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 305, 616
Cfr9I CCCGGG 1 cut(s) 202
CpoI CGGWCCG 1 cut(s) 305
CseI GACGC 4 cut(s) 108, 196, 216, 377
Csp6I GTAC 1 cut(s) 628
CspI CGGWCCG 1 cut(s) 305
CviAII CATG 4 cut(s) 625, 631, 851, 876
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 6 cut(s) 11, 23, 29, 403, 408, 606
DpnI GATC 3 cut(s) 276, 682, 789
DpnII GATC 3 cut(s) 274, 680, 787
DraI TTTAAA 1 cut(s) 837
DraIII CACNNNGTG 1 cut(s) 659
DrdI GACNNNNNNGTC 1 cut(s) 176
DriI GACNNNNNGTC 1 cut(s) 862
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 815
Eam1104I CTCTTC 2 cut(s) 304, 513
Eam1105I GACNNNNNGTC 1 cut(s) 862
EarI CTCTTC 2 cut(s) 304, 513
EciI GGCGGA 1 cut(s) 476
Eco105I TACGTA 1 cut(s) 719
Eco130I CCWWGG 2 cut(s) 105, 541
Eco47I GGWCC 2 cut(s) 305, 616
Eco88I CYCGRG 2 cut(s) 131, 202
EcoO109I RGGNCCY 1 cut(s) 616
EcoRII CCWGG 3 cut(s) 619, 793, 812
EcoT14I CCWWGG 2 cut(s) 105, 541
ErhI CCWWGG 2 cut(s) 105, 541
Esp3I CGTCTC 2 cut(s) 153, 703
FaeI CATG 4 cut(s) 628, 634, 854, 879
FaiI YATR 9 cut(s) 261, 368, 626, 632, 722, 724, 726, 852, 877
FaqI GGGAC 1 cut(s) 629
FatI CATG 4 cut(s) 624, 630, 850, 875
FauI CCCGC 1 cut(s) 31
FblI GTMKAC 1 cut(s) 45
FokI GGATG 1 cut(s) 371
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 816
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 1 cut(s) 817
HapII CCGG 5 cut(s) 61, 70, 203, 270, 303
HgaI GACGC 4 cut(s) 108, 196, 216, 377
HhaI GCGC 1 cut(s) 145
Hin1I GRCGYC 3 cut(s) 119, 162, 207
Hin1II CATG 4 cut(s) 628, 634, 854, 879
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HincII GTYRAC 1 cut(s) 740
HindII GTYRAC 1 cut(s) 740
HindIII AAGCTT 2 cut(s) 509, 668
HinfI GANTC 4 cut(s) 241, 736, 802, 809
HpaII CCGG 5 cut(s) 61, 70, 203, 270, 303
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 2 cut(s) 46, 740
Hpy188I TCNGA 5 cut(s) 12, 24, 94, 358, 685
Hpy188III TCNNGA 8 cut(s) 61, 238, 392, 431, 515, 678, 806, 842
Hpy8I GTNNAC 2 cut(s) 46, 740
Hpy99I CGWCG 3 cut(s) 82, 124, 212
HpyAV CCTTC 2 cut(s) 543, 605
HpyCH4III ACNGT 1 cut(s) 864
HpyCH4IV ACGT 2 cut(s) 162, 718
HpyCH4V TGCA 2 cut(s) 558, 662
HpyF10VI GCNNNNNNNGC 8 cut(s) 116, 204, 253, 316, 385, 404, 530, 676
HpyF3I CTNAG 6 cut(s) 11, 23, 29, 403, 408, 606
HpySE526I ACGT 2 cut(s) 162, 718
Hsp92I GRCGYC 3 cut(s) 119, 162, 207
Hsp92II CATG 4 cut(s) 628, 634, 854, 879
HspAI GCGC 1 cut(s) 143
KflI GGGWCCC 1 cut(s) 616
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 274, 680, 787
LmnI GCTCC 1 cut(s) 63
Lsp1109I GCAGC 4 cut(s) 136, 139, 185, 331
LweI GCATC 1 cut(s) 671
MaeI CTAG 1 cut(s) 399
MaeII ACGT 2 cut(s) 162, 718
MaeIII GTNAC 1 cut(s) 478
MalI GATC 3 cut(s) 276, 682, 789
MbiI CCGCTC 2 cut(s) 35, 310
MboI GATC 3 cut(s) 274, 680, 787
MboII GAAGA 8 cut(s) 66, 291, 530, 558, 635, 707, 782, 857
MlsI TGGCCA 1 cut(s) 817
MluCI AATT 8 cut(s) 88, 96, 347, 450, 465, 486, 574, 773
MluI ACGCGT 1 cut(s) 225
MluNI TGGCCA 1 cut(s) 817
MlyI GAGTC 2 cut(s) 235, 745
Mox20I TGGCCA 1 cut(s) 817
MroI TCCGGA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 817
MseI TTAA 3 cut(s) 600, 705, 836
MslI CAYNNNNRTG 1 cut(s) 629
Msp20I TGGCCA 1 cut(s) 817
MspI CCGG 5 cut(s) 61, 70, 203, 270, 303
MspR9I CCNGG 5 cut(s) 203, 204, 621, 795, 814
MvaI CCWGG 3 cut(s) 621, 795, 814
MvnI CGCG 4 cut(s) 18, 227, 285, 679
MwoI GCNNNNNNNGC 8 cut(s) 116, 204, 253, 316, 385, 404, 530, 676
NciI CCSGG 2 cut(s) 203, 204
NdeII GATC 3 cut(s) 274, 680, 787
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 4 cut(s) 628, 634, 854, 879
NlaIV GGNNCC 3 cut(s) 220, 617, 618
NmeAIII GCCGAG 2 cut(s) 174, 228
NruI TCGCGA 1 cut(s) 679
NspI RCATGY 2 cut(s) 628, 634
PciI ACATGT 1 cut(s) 630
PcsI WCGNNNNNNNCGW 1 cut(s) 451
PfeI GAWTC 2 cut(s) 802, 809
PfoI TCCNGGA 1 cut(s) 793
PleI GAGTC 2 cut(s) 235, 744
PpsI GAGTC 2 cut(s) 235, 744
Ppu21I YACGTR 1 cut(s) 719
PpuMI RGGWCCY 1 cut(s) 616
PscI ACATGT 1 cut(s) 630
PsiI TTATAA 1 cut(s) 368
Psp5II RGGWCCY 1 cut(s) 616
Psp6I CCWGG 3 cut(s) 619, 793, 812
PspGI CCWGG 3 cut(s) 619, 793, 812
PspN4I GGNNCC 3 cut(s) 220, 617, 618
PspPI GGNCC 2 cut(s) 305, 616
PspPPI RGGWCCY 1 cut(s) 616
RruI TCGCGA 1 cut(s) 679
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 629
Rsr2I CGGWCCG 1 cut(s) 305
RsrII CGGWCCG 1 cut(s) 305
SaqAI TTAA 3 cut(s) 600, 705, 836
Sau3AI GATC 3 cut(s) 274, 680, 787
Sau96I GGNCC 2 cut(s) 305, 616
SchI GAGTC 2 cut(s) 235, 745
ScrFI CCNGG 5 cut(s) 203, 204, 621, 795, 814
SfaNI GCATC 1 cut(s) 671
SinI GGWCC 2 cut(s) 305, 616
SmaI CCCGGG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SnaBI TACGTA 1 cut(s) 719
SrfI GCCCGGGC 1 cut(s) 204
Sse9I AATT 8 cut(s) 88, 96, 347, 450, 465, 486, 574, 773
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 5 cut(s) 201, 202, 619, 793, 812
StyI CCWWGG 2 cut(s) 105, 541
TaaI ACNGT 1 cut(s) 864
TaiI ACGT 2 cut(s) 165, 721
TaqI TCGA 3 cut(s) 239, 454, 829
TasI AATT 8 cut(s) 88, 96, 347, 450, 465, 486, 574, 773
TatI WGTACW 1 cut(s) 627
TauI GCSGC 6 cut(s) 18, 38, 113, 116, 119, 872
TfiI GAWTC 2 cut(s) 802, 809
Tru1I TTAA 3 cut(s) 600, 705, 836
Tru9I TTAA 3 cut(s) 600, 705, 836
TscAI CASTG 2 cut(s) 188, 565
TseI GCWGC 5 cut(s) 124, 127, 198, 319, 872
TspDTI ATGAA 1 cut(s) 744
TspGWI ACGGA 1 cut(s) 707
TspMI CCCGGG 1 cut(s) 202
TspRI CASTG 2 cut(s) 188, 565
VpaK11BI GGWCC 2 cut(s) 305, 616
XapI RAATTY 2 cut(s) 88, 465
XceI RCATGY 2 cut(s) 628, 634
XmaI CCCGGG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 1 cut(s) 399
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.