Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Reverse (-)

64282386 .. 64282571

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG460200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGCCTCATCTCGCCCTCTGCCGCCGAAGCCTCCCGATCTCGACCTCACGATCGTCTCCGCCAAGCACCTGAAGAACGTCAACCAGAAGGACGACGACCTCAAGCCCTACGCCGTCTTCTGGGTCGACCCCGACCTCCGCGTCGCCACCAAATCTGATGACTCCGGCTCCACCCCATCCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

61

Amino Acids

6.67

Weight (kDa)

5.53

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	23, 60, 139
AcuI	CTGAAG	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	3
BbsI	GAAGAC	1 cut(s)	109
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	184
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
BmiI	GGNNCC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	37, 51
BspACI	CCGC	3 cut(s)	23, 60, 139
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	169
BssMI	GATC	2 cut(s)	37, 51
BstF5I	GGATG	1 cut(s)	176
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	40, 54
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	2 cut(s)	37, 51
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstUI	CGCG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	176
CseI	GACGC	1 cut(s)	130
CviJI	RGCY	4 cut(s)	5, 31, 106, 168
CviKI_1	RGCY	4 cut(s)	5, 31, 106, 168
DpnI	GATC	2 cut(s)	39, 53
DpnII	GATC	2 cut(s)	37, 51
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	1 cut(s)	184
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	130
HincII	GTYRAC	2 cut(s)	82, 127
HindII	GTYRAC	2 cut(s)	82, 127
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	82, 127
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	3 cut(s)	35, 41, 49
Hpy8I	GTNNAC	2 cut(s)	82, 127
Hpy99I	CGWCG	2 cut(s)	98, 146
HpyAV	CCTTC	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	37, 51
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	4 cut(s)	83, 98, 106, 178
MaeI	CTAG	1 cut(s)	184
MaeII	ACGT	1 cut(s)	78
MalI	GATC	2 cut(s)	39, 53
MboI	GATC	2 cut(s)	37, 51
MboII	GAAGA	2 cut(s)	85, 109
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	6 cut(s)	16, 27, 42, 56, 110, 146
MspI	CCGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	28
NdeII	GATC	2 cut(s)	37, 51
NlaIV	GGNNCC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	24
Ple19I	CGATCG	1 cut(s)	54
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	169
PvuI	CGATCG	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	125
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	2 cut(s)	37, 51
SchI	GAGTC	1 cut(s)	155
SetI	ASST	5 cut(s)	48, 72, 81, 102, 138
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SsiI	CCGC	3 cut(s)	23, 60, 139
SspMI	CTAG	1 cut(s)	184
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	42, 126
TauI	GCSGC	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.