Rh1DG353000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001015
Physical Location & Seq
Forward (+)
57677476 .. 57677853
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG353000.1

Sequence Viewer

Length: 378 bp
ATGTACTATAGCTTGTCTCAAAGATTTGATGGTATTGATTTGGTTCTTGAGCTCGAAAGAGTTGTCCTACTCAACCCCCTGAGTCTTTGCACTCTGCCCCGTTCTGAACGGCGCTACCAAGTCGTGTGGCGGATTGACCCCGGCGGCAGAAAGCACGCGACTAGTAAGGCTGAAGGCGAACCAAACCCTGAATGGAACGAAAAGTACATCATCGGCTTAAACCGCAACCCTGTGAATGAGGGCCTCTTTGTGAACGTAGAGGTCTTAAGGTATAACAGCGTGGAAAACCGTCGTGACCCCAGAACCTCCGACGGCATAGGGGAAGTGTTTAAGGGAAGGATTCCGTTTCCGAAGAGTCTCAATAAGGGAGTAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

125

Amino Acids

14.37

Weight (kDa)

9.16

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 158
AciI CCGC 3 cut(s) 130, 144, 223
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 2 cut(s) 5, 206
AflII CTTAAG 1 cut(s) 265
AhlI ACTAGT 1 cut(s) 161
AluBI AGCT 3 cut(s) 12, 52, 375
AluI AGCT 3 cut(s) 12, 52, 375
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 21, 362
AoxI GGCC 1 cut(s) 241
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 141
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BccI CCATC 1 cut(s) 23
BceAI ACGGC 2 cut(s) 125, 328
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 21, 362
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 2 cut(s) 162, 376
BfmI CTRYAG 1 cut(s) 7
BfoI RGCGCY 1 cut(s) 115
BfrI CTTAAG 1 cut(s) 265
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 21, 362
BsnI GGCC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 54
BspACI CCGC 3 cut(s) 130, 144, 223
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 72
BspFNI CGCG 1 cut(s) 158
BspTI CTTAAG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 347
BstAFI CTTAAG 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 80
BstFNI CGCG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstMAI GTCTC 2 cut(s) 21, 362
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 7
BstUI CGCG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 4, 205
CspCI CAANNNNNGTGG 2 cut(s) 107, 142
CviJI RGCY 6 cut(s) 12, 52, 170, 216, 243, 375
CviKI_1 RGCY 6 cut(s) 12, 52, 170, 216, 243, 375
CviQI GTAC 2 cut(s) 4, 205
DdeI CTNAG 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
EciI GGCGGA 1 cut(s) 145
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 54
FaiI YATR 3 cut(s) 9, 273, 317
Fnu4HI GCNGC 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 2 cut(s) 162, 376
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 243
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 3 cut(s) 82, 340, 355
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 106, 310, 351
Hpy188III TCNNGA 2 cut(s) 47, 293
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 2 cut(s) 294, 314
HpyAV CCTTC 2 cut(s) 167, 330
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 255
HspAI GCGC 1 cut(s) 112
LpnPI CCDG 5 cut(s) 92, 154, 201, 243, 313
MaeI CTAG 2 cut(s) 162, 376
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 293
MboII GAAGA 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 54
MlyI GAGTC 2 cut(s) 91, 364
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 4 cut(s) 232, 253, 254, 316
MseI TTAA 3 cut(s) 218, 266, 330
MspCI CTTAAG 1 cut(s) 265
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 222
NciI CCSGG 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 2 cut(s) 90, 363
PpsI GAGTC 2 cut(s) 90, 363
Psp124BI GAGCTC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 241
PsrI GAACNNNNNNTAC 2 cut(s) 188, 220
RsaI GTAC 2 cut(s) 5, 206
RsaNI GTAC 2 cut(s) 4, 205
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 218, 266, 330
SatI GCNGC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 2 cut(s) 91, 364
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 54
SetI ASST 7 cut(s) 14, 54, 258, 264, 272, 308, 377
SfcI CTRYAG 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 47, 265
SmoI CTYRAG 2 cut(s) 47, 265
SpeI ACTAGT 1 cut(s) 161
SsiI CCGC 3 cut(s) 130, 144, 223
SspMI CTAG 2 cut(s) 162, 376
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 54
TatI WGTACW 2 cut(s) 3, 204
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 3 cut(s) 218, 266, 330
Tru9I TTAA 3 cut(s) 218, 266, 330
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 333
Vha464I CTTAAG 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
XspI CTAG 2 cut(s) 162, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.