Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002235.1

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Forward (+)

238317 .. 241843

Gene Structure 3527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002235.1_g000074.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggcctcctctcgccctctgccgccgaagcctcccgatctcgacctcacgatcgtctccaccaagcacctgaagaacttcaactggaataacgacgacctcaagccctacgctatcttctgggtcgaccctgacctccgcctcgccaccaaatcagacaactccagctccacccgacccttctggaatgagcgattcactctccccctctccttctccctccacgactccttcctcaccctcaaaatcttccactccaaaccctctgacactcccaaacccttagtcggctctctccacctccccctcaaagacctacgtgacctggataaatggaggaggagagagatggaagaagaagaggataggggcaaaatgatccttggcaaaaaccgaacccttgacgccagtttggtggccggagacggccggaatcgccggaaatcgacaaaactcccaaactgctacagtgaacttcacggctcaattccgagctcccccggccgagccaccgcaaaacaccaccacaggcgtgacaaggatgaagaggcgagcttgccggtgcccggattccatcgtggggtggccggaggaggaagaaatcggaggaagaagaaatcgggccgaagaggagaaaggatcgggggagaggagagaaaaaagccgagatctgctccggatacttgtgaatattgcaatcttcccatgggctacaatggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

240

Amino Acids

27.28

Weight (kDa)

9.9

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	676
AciI	CCGC	3 cut(s)	23, 139, 513
AclWI	GGATC	2 cut(s)	373, 647
AcoI	YGGCCR	4 cut(s)	417, 427, 502, 585
AcuI	CTGAAG	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	287, 566, 580
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	324
AleI	CACNNNNGTG	1 cut(s)	531
AluBI	AGCT	3 cut(s)	168, 495, 555
AluI	AGCT	3 cut(s)	168, 495, 555
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	2 cut(s)	61, 417
AlwI	GGATC	2 cut(s)	373, 647
Aor13HI	TCCGGA	1 cut(s)	676
AoxI	GGCC	6 cut(s)	3, 417, 427, 502, 585, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
Asp700I	GAANNNNTTC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	622
AsuC2I	CCSGG	2 cut(s)	501, 567
AsuHPI	GGTGA	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	497
BccI	CCATC	2 cut(s)	343, 582
BceAI	ACGGC	2 cut(s)	442, 496
BciT130I	CCWGG	1 cut(s)	326
BciVI	GTATCC	1 cut(s)	673
BcnI	CCSGG	2 cut(s)	501, 567
BcoDI	GTCTC	2 cut(s)	61, 417
BfmI	CTRYAG	1 cut(s)	466
BfuI	GTATCC	1 cut(s)	673
BglII	AGATCT	1 cut(s)	668
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	3 cut(s)	326, 501, 567
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	3 cut(s)	326, 501, 567
BplI	GAGNNNNNCTC	2 cut(s)	658, 690
BpmI	CTGGAG	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	501, 567
BsaAI	YACGTR	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	3 cut(s)	382, 499, 705
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 566, 580
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	2 cut(s)	89, 408
BseAI	TCCGGA	1 cut(s)	676
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	3 cut(s)	382, 499, 705
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	3 cut(s)	287, 566, 580
BseNI	ACTGG	2 cut(s)	89, 408
BseRI	GAGGAG	5 cut(s)	352, 355, 606, 645, 665
BseSI	GKGCMC	1 cut(s)	567
BseX3I	CGGCCG	2 cut(s)	427, 502
Bsh1285I	CGRYCG	3 cut(s)	54, 430, 505
BshFI	GGCC	6 cut(s)	5, 419, 429, 504, 587, 624
BshNI	GGYRCC	1 cut(s)	562
BsiEI	CGRYCG	3 cut(s)	54, 430, 505
BsiHKAI	GWGCWC	1 cut(s)	497
BsiSI	CCGG	8 cut(s)	420, 430, 439, 501, 560, 567, 588, 677
BslI	CCNNNNNNNGG	3 cut(s)	287, 566, 580
BsmAI	GTCTC	2 cut(s)	61, 417
BsmBI	CGTCTC	2 cut(s)	61, 417
BsnI	GGCC	6 cut(s)	5, 419, 429, 504, 587, 624
Bsp1286I	GDGCHC	2 cut(s)	497, 567
Bsp13I	TCCGGA	1 cut(s)	676
Bsp143I	GATC	5 cut(s)	37, 51, 378, 639, 668
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	3 cut(s)	23, 139, 513
BspANI	GGCC	6 cut(s)	5, 419, 429, 504, 587, 624
BspEI	TCCGGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	2 cut(s)	373, 647
BspT107I	GGYRCC	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	89, 408
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	3 cut(s)	382, 499, 705
BssMI	GATC	5 cut(s)	37, 51, 378, 639, 668
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	2 cut(s)	382, 705
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	3 cut(s)	354, 540, 622
BstACI	GRCGYC	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	553, 557
BstDEI	CTNAG	1 cut(s)	283
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	5 cut(s)	40, 54, 381, 642, 671
BstMAI	GTCTC	2 cut(s)	61, 417
BstMBI	GATC	5 cut(s)	37, 51, 378, 639, 668
BstMCI	CGRYCG	3 cut(s)	54, 430, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 435, 501
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	324, 499, 565
BstSFI	CTRYAG	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	567
BstX2I	RGATCY	1 cut(s)	668
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	668
BstZI	CGGCCG	2 cut(s)	427, 502
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	6 cut(s)	5, 419, 429, 504, 587, 624
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	553, 557
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	622
CseI	GACGC	1 cut(s)	413
CviAII	CATG	1 cut(s)	706
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	5 cut(s)	39, 53, 380, 641, 670
DpnII	GATC	5 cut(s)	37, 51, 378, 639, 668
EaeI	YGGCCR	4 cut(s)	417, 427, 502, 585
EagI	CGGCCG	2 cut(s)	427, 502
Eam1104I	CTCTTC	3 cut(s)	354, 540, 622
EarI	CTCTTC	3 cut(s)	354, 540, 622
EciI	GGCGGA	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	495
EclXI	CGGCCG	2 cut(s)	427, 502
Eco130I	CCWWGG	2 cut(s)	382, 705
Eco24I	GRGCYC	1 cut(s)	497
Eco52I	CGGCCG	2 cut(s)	427, 502
Eco53kI	GAGCTC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	2 cut(s)	382, 705
EcoT38I	GRGCYC	1 cut(s)	497
ErhI	CCWWGG	2 cut(s)	382, 705
Esp3I	CGTCTC	2 cut(s)	61, 417
FaeI	CATG	1 cut(s)	709
FaiI	YATR	1 cut(s)	707
FatI	CATG	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	6 cut(s)	5, 419, 429, 504, 587, 624
HapII	CCGG	8 cut(s)	420, 430, 439, 501, 560, 567, 588, 677
HgaI	GACGC	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	709
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	4 cut(s)	195, 227, 433, 570
HpaII	CCGG	8 cut(s)	420, 430, 439, 501, 560, 567, 588, 677
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	127, 473
Hpy188I	TCNGA	4 cut(s)	157, 268, 492, 606
Hpy188III	TCNNGA	5 cut(s)	35, 41, 49, 184, 677
Hpy8I	GTNNAC	2 cut(s)	127, 473
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	190, 223, 241
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 435, 501
HpyF3I	CTNAG	1 cut(s)	283
HpySE526I	ACGT	1 cut(s)	319
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	709
Kpn2I	TCCGGA	1 cut(s)	676
Kzo9I	GATC	5 cut(s)	37, 51, 378, 639, 668
LmnI	GCTCC	3 cut(s)	173, 500, 679
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	2 cut(s)	320, 533
MalI	GATC	5 cut(s)	39, 53, 380, 641, 670
MboI	GATC	5 cut(s)	37, 51, 378, 639, 668
MflI	RGATCY	1 cut(s)	668
MhlI	GDGCHC	2 cut(s)	497, 567
MluCI	AATT	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	221
MroI	TCCGGA	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	8 cut(s)	420, 430, 439, 501, 560, 567, 588, 677
MspR9I	CCNGG	3 cut(s)	326, 501, 567
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	28, 435, 501
NciI	CCSGG	2 cut(s)	501, 567
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	5 cut(s)	37, 51, 378, 639, 668
NlaIII	CATG	1 cut(s)	709
NlaIV	GGNNCC	1 cut(s)	564
NmeAIII	GCCGAG	2 cut(s)	530, 690
NmuCI	GTSAC	2 cut(s)	320, 533
OliI	CACNNNNGTG	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	3 cut(s)	195, 433, 570
PkrI	GCNGC	1 cut(s)	24
Ple19I	CGATCG	1 cut(s)	54
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	668
PvuI	CGATCG	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	497
SalI	GTCGAC	1 cut(s)	125
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	5 cut(s)	37, 51, 378, 639, 668
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	326, 501, 567
SduI	GDGCHC	2 cut(s)	497, 567
SfcI	CTRYAG	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	3 cut(s)	23, 139, 513
SspI	AATATT	1 cut(s)	692
SstI	GAGCTC	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	324, 499, 565
StyI	CCWWGG	2 cut(s)	382, 705
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	3 cut(s)	42, 126, 446
TasI	AATT	1 cut(s)	486
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	3 cut(s)	195, 433, 570
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	2 cut(s)	320, 533
Tsp45I	GTSAC	2 cut(s)	320, 533
TspDTI	ATGAA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.