FvH4_6g44890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001015
Physical Location & Seq
Forward (+)
34519806 .. 34520765
960 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44890.t1

Sequence Viewer

Length: 612 bp
ATGGAGAGGAGGACGAAGATGACTATGGATACCAGGAGGAACCCTGGACGTTACAACACTAGACGTGCAGTTCCTTATTGGATCAAAGGCATGTTAAGAGAAGAAGACTATGACCTAGATTTATCTTTCACCATTCACCGCGCCGAAGGAATCGACCCTCCGAGTGAACGCATCACTGACCGGACGTACTTCTTGGTGTGGTGGATCGTACCCGGGATCGAACACTGGGCACCATTTCCTGAGCCAGGGAGACCTTTTGATCCTGCATGGAATAGAATATGGACTCAACGGTTGGAGAAACATGTGTGGCCTGGCTTTATTCATGTGGAAGTTATGAGGAGACGAGACAATTGGGCAGCGGGAACTTCCGGTGGCATAGCGACGGTGGTGGATGATGGAATAGAGGAAGTCGTCGAGCCGGGAACTCCTGGTGCGACTGTGTATGGCATTGAGTCAGTGAGTCGATGCAGGATCCCTCTGCCGAGGCCTGGTGAGAAAACTTCAGGGAGGTATGGACTTGTGAAGAGTGCTGGGGCTGGGATAATTGGACAAGGACATATTTTTGTCACGTTGGAACTAAAGAAATGTATACCTAGTTGGATTCCGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

204

Amino Acids

23.24

Weight (kDa)

8.95

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 589
AccII CGCG 1 cut(s) 141
AciI CCGC 3 cut(s) 139, 359, 605
AclWI GGATC 6 cut(s) 89, 212, 224, 254, 466, 479
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 2 cut(s) 188, 210
AfiI CCNNNNNNNGG 2 cut(s) 245, 488
AflIII ACRYGT 1 cut(s) 301
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 6 cut(s) 32, 43, 244, 310, 427, 487
Alw26I GTCTC 3 cut(s) 244, 334, 339
AlwI GGATC 6 cut(s) 89, 212, 224, 254, 466, 479
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 2 cut(s) 308, 485
ApeKI GCWGC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 143
AsuC2I CCSGG 3 cut(s) 213, 214, 420
AsuHPI GGTGA 3 cut(s) 121, 128, 503
AvaI CYCGRG 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 232
BamHI GGATCC 1 cut(s) 471
BanI GGYRCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 368
BccI CCATC 1 cut(s) 389
BciT130I CCWGG 6 cut(s) 34, 45, 246, 312, 429, 489
BciVI GTATCC 1 cut(s) 22
BcnI CCSGG 3 cut(s) 213, 214, 420
BcoDI GTCTC 3 cut(s) 244, 334, 339
BfaI CTAG 3 cut(s) 60, 116, 594
BfuI GTATCC 1 cut(s) 22
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 9 cut(s) 34, 45, 213, 214, 246, 312, 420, 429, 489
BmeT110I CYCGRG 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 65
BmiI GGNNCC 3 cut(s) 41, 231, 473
BmrFI CCNGG 9 cut(s) 34, 45, 213, 214, 246, 312, 420, 429, 489
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 2 cut(s) 180, 455
BmuI ACTGGG 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 240
BpuMI CCSGG 3 cut(s) 213, 214, 420
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 4 cut(s) 43, 212, 245, 482
BsaWI WCCGGW 2 cut(s) 180, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 488
Bse1I ACTGG 1 cut(s) 230
BseBI CCWGG 6 cut(s) 34, 45, 246, 312, 429, 489
BseDI CCNNGG 4 cut(s) 43, 212, 245, 482
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 2 cut(s) 245, 488
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 2 cut(s) 22, 352
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 1 cut(s) 368
BseYI CCCAGC 2 cut(s) 530, 536
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 310, 487
BshNI GGYRCC 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 4 cut(s) 181, 213, 369, 419
BslI CCNNNNNNNGG 2 cut(s) 245, 488
BsmAI GTCTC 3 cut(s) 244, 334, 339
BsmBI CGTCTC 1 cut(s) 334
BsnI GGCC 2 cut(s) 310, 487
Bso31I GGTCTC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 5 cut(s) 81, 204, 216, 259, 471
BspACI CCGC 3 cut(s) 139, 359, 605
BspANI GGCC 2 cut(s) 310, 487
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 41, 231, 473
BspPI GGATC 6 cut(s) 89, 212, 224, 254, 466, 479
BspT107I GGYRCC 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 244
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 4 cut(s) 43, 212, 245, 482
BssMI GATC 5 cut(s) 81, 204, 216, 259, 471
BssNAI GTATAC 1 cut(s) 590
Bst1107I GTATAC 1 cut(s) 590
Bst2UI CCWGG 6 cut(s) 34, 45, 246, 312, 429, 489
Bst4CI ACNGT 3 cut(s) 291, 385, 439
Bst6I CTCTTC 1 cut(s) 518
BstDEI CTNAG 1 cut(s) 240
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 5 cut(s) 84, 207, 219, 262, 474
BstMAI GTCTC 3 cut(s) 244, 334, 339
BstMBI GATC 5 cut(s) 81, 204, 216, 259, 471
BstNI CCWGG 6 cut(s) 34, 45, 246, 312, 429, 489
BstNSI RCATGY 2 cut(s) 94, 305
BstSCI CCNGG 9 cut(s) 32, 43, 211, 212, 244, 310, 418, 427, 487
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 368
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BstZ17I GTATAC 1 cut(s) 590
BsuI GTATCC 1 cut(s) 22
BsuRI GGCC 2 cut(s) 310, 487
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 3 cut(s) 174, 223, 462
CfoI GCGC 1 cut(s) 143
Cfr9I CCCGGG 1 cut(s) 212
Csp6I GTAC 2 cut(s) 187, 209
CviAII CATG 4 cut(s) 91, 267, 302, 323
CviJI RGCY 6 cut(s) 244, 310, 315, 418, 487, 536
CviKI_1 RGCY 6 cut(s) 244, 310, 315, 418, 487, 536
CviQI GTAC 2 cut(s) 187, 209
DdeI CTNAG 1 cut(s) 240
DpnI GATC 5 cut(s) 83, 206, 218, 261, 473
DpnII GATC 5 cut(s) 81, 204, 216, 259, 471
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco147I AGGCCT 1 cut(s) 487
Eco31I GGTCTC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRII CCWGG 6 cut(s) 32, 43, 244, 310, 427, 487
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 4 cut(s) 94, 270, 305, 326
FatI CATG 4 cut(s) 90, 266, 301, 322
FauI CCCGC 1 cut(s) 352
FblI GTMKAC 1 cut(s) 589
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 3 cut(s) 60, 116, 594
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 357
GsaI CCCAGC 2 cut(s) 534, 540
HaeIII GGCC 2 cut(s) 310, 487
HapII CCGG 4 cut(s) 181, 213, 369, 419
HhaI GCGC 1 cut(s) 143
Hin1II CATG 4 cut(s) 94, 270, 305, 326
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 5 cut(s) 150, 283, 452, 460, 601
HpaII CCGG 4 cut(s) 181, 213, 369, 419
HphI GGTGA 3 cut(s) 121, 128, 503
Hpy166II GTNNAC 2 cut(s) 167, 590
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 167, 590
Hpy99I CGWCG 2 cut(s) 385, 416
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 3 cut(s) 291, 385, 439
HpyCH4IV ACGT 4 cut(s) 49, 64, 185, 569
HpyCH4V TGCA 3 cut(s) 68, 266, 468
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 4 cut(s) 49, 64, 185, 569
Hsp92II CATG 4 cut(s) 94, 270, 305, 326
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 5 cut(s) 81, 204, 216, 259, 471
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 2 cut(s) 180, 455
MaeI CTAG 3 cut(s) 60, 116, 594
MaeII ACGT 4 cut(s) 49, 64, 185, 569
MaeIII GTNAC 2 cut(s) 50, 565
MalI GATC 5 cut(s) 83, 206, 218, 261, 473
MboI GATC 5 cut(s) 81, 204, 216, 259, 471
MboII GAAGA 4 cut(s) 28, 113, 116, 535
MfeI CAATTG 1 cut(s) 349
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 2 cut(s) 349, 543
MlyI GAGTC 3 cut(s) 277, 461, 469
MmeI TCCRAC 3 cut(s) 273, 552, 578
MnlI CCTC 8 cut(s) 3, 30, 168, 330, 397, 477, 486, 501
MseI TTAA 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 4 cut(s) 181, 213, 369, 419
MspR9I CCNGG 9 cut(s) 34, 45, 213, 214, 246, 312, 420, 429, 489
MunI CAATTG 1 cut(s) 349
MvaI CCWGG 6 cut(s) 34, 45, 246, 312, 429, 489
MvnI CGCG 1 cut(s) 141
NciI CCSGG 3 cut(s) 213, 214, 420
NdeII GATC 5 cut(s) 81, 204, 216, 259, 471
NlaIII CATG 4 cut(s) 94, 270, 305, 326
NlaIV GGNNCC 3 cut(s) 41, 231, 473
NmeAIII GCCGAG 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 565
NspI RCATGY 2 cut(s) 94, 305
PceI AGGCCT 1 cut(s) 487
PciI ACATGT 1 cut(s) 301
PfeI GAWTC 2 cut(s) 150, 601
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 3 cut(s) 277, 460, 468
PpsI GAGTC 3 cut(s) 277, 460, 468
PscI ACATGT 1 cut(s) 301
Psp6I CCWGG 6 cut(s) 32, 43, 244, 310, 427, 487
PspFI CCCAGC 2 cut(s) 530, 536
PspGI CCWGG 6 cut(s) 32, 43, 244, 310, 427, 487
PspN4I GGNNCC 3 cut(s) 41, 231, 473
PsuI RGATCY 1 cut(s) 471
RsaI GTAC 2 cut(s) 188, 210
RsaNI GTAC 2 cut(s) 187, 209
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 5 cut(s) 81, 204, 216, 259, 471
SchI GAGTC 3 cut(s) 277, 461, 469
ScrFI CCNGG 9 cut(s) 34, 45, 213, 214, 246, 312, 420, 429, 489
SduI GDGCHC 1 cut(s) 232
SetI ASST 8 cut(s) 52, 67, 117, 188, 256, 512, 572, 595
SfaNI GCATC 2 cut(s) 180, 455
SmaI CCCGGG 1 cut(s) 214
Sse9I AATT 2 cut(s) 349, 543
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 3 cut(s) 139, 359, 605
SspMI CTAG 3 cut(s) 60, 116, 594
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 9 cut(s) 32, 43, 211, 212, 244, 310, 418, 427, 487
TaaI ACNGT 3 cut(s) 291, 385, 439
TaiI ACGT 4 cut(s) 52, 67, 188, 572
TaqI TCGA 4 cut(s) 153, 219, 414, 463
TasI AATT 2 cut(s) 349, 543
TfiI GAWTC 2 cut(s) 150, 601
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 3 cut(s) 181, 230, 462
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 3 cut(s) 181, 230, 462
XagI CCTNNNNNAGG 1 cut(s) 243
XceI RCATGY 2 cut(s) 94, 305
XmaI CCCGGG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 589
XspI CTAG 3 cut(s) 60, 116, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.