Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Reverse (-)

8813767 .. 8814336

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027128

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAAACAAACCCTGAGAGCAGCCACCGTTCTGCTTACACCGGCGGTTTCCGGAGATCCTCGGCACGGATGAAGAAGATGAAGATGAAAGAGAAAGTTATAGAAAAGAAAGTGCATGTTAAGACCTTGAAGATTTGGATCCAAGGAGTCGTGGGAATTGACCCCCCAAGTCGCAGCACCCTACCCGACTCTGAACGGGTCTACCAAATCGTGTGCCGGGTTGATGGACCCGAAGAAATAGAAGTCAACGCCTTTTATGGAAAGGCAAAAGGACCAAATCCTTCATGGTTCAAATATACTACAGTTCCTTTGGATGGCCACCCCTTAGGGGAGGGCTTTCTGAACGTGGAGGTATTGAGGTTTAATAGTAAGGAAAACCTCACCTACCCTGGAACCTCCGACTGCCCTAGCATAGGGGCTGTCAGTCGGGTCAGGATTCCGTTGCCGGCAACGATCAATGACAGAATAGAACGGCGGTGTGAACTTGTGAAGCTTGATGGGTCTGGCAACCTCAAGCTTGAAGGGTTTATAATTTTGTCAATGCGTCTGGAAGGGTTTACCTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

190

Amino Acids

21.31

Weight (kDa)

9.51

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AccI	GTMKAC	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	51
AciI	CCGC	2 cut(s)	45, 475
AclWI	GGATC	3 cut(s)	51, 133, 146
AcoI	YGGCCR	1 cut(s)	316
AfiI	CCNNNNNNNGG	4 cut(s)	66, 314, 328, 413
AgsI	TTSAA	3 cut(s)	130, 292, 521
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	2 cut(s)	493, 517
AluI	AGCT	2 cut(s)	493, 517
AlwI	GGATC	3 cut(s)	51, 133, 146
Aor13HI	TCCGGA	1 cut(s)	51
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	2 cut(s)	21, 174
AspS9I	GGNCC	2 cut(s)	227, 272
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	2 cut(s)	227, 272
AxyI	CCTNAGG	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	318
BamHI	GGATCC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	33, 186
BccI	CCATC	3 cut(s)	218, 308, 491
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	22, 175
BlsI	GCNGC	2 cut(s)	23, 176
Bme1390I	CCNGG	2 cut(s)	218, 390
Bme18I	GGWCC	2 cut(s)	227, 272
BmgT120I	GGNCC	2 cut(s)	227, 272
BmiI	GGNNCC	3 cut(s)	140, 229, 394
BmrFI	CCNGG	2 cut(s)	218, 390
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	60, 142, 388
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 314, 328, 413
Bse118I	RCCGGY	2 cut(s)	41, 445
Bse21I	CCTNAGG	1 cut(s)	325
Bse8I	GATNNNNATC	1 cut(s)	137
BseAI	TCCGGA	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	60, 142, 388
BseGI	GGATG	2 cut(s)	75, 319
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	4 cut(s)	66, 314, 328, 413
BseMII	CTCAG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	33, 186
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	4 cut(s)	42, 52, 217, 446
BslI	CCNNNNNNNGG	4 cut(s)	66, 314, 328, 413
BsnI	GGCC	1 cut(s)	318
Bsp13I	TCCGGA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	56, 138, 453
BspACI	CCGC	2 cut(s)	45, 475
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	7
BspEI	TCCGGA	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	140, 229, 394
BspPI	GGATC	3 cut(s)	51, 133, 146
BsrFI	RCCGGY	2 cut(s)	41, 445
BssAI	RCCGGY	2 cut(s)	41, 445
BssECI	CCNNGG	3 cut(s)	60, 142, 388
BssMI	GATC	3 cut(s)	56, 138, 453
BssT1I	CCWWGG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	29, 304
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	15, 325
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	75, 319
BstKTI	GATC	3 cut(s)	59, 141, 456
BstMBI	GATC	3 cut(s)	56, 138, 453
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	216, 388
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	33, 186
BstX2I	RGATCY	2 cut(s)	56, 138
BstYI	RGATCY	2 cut(s)	56, 138
Bsu36I	CCTNAGG	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	75, 319
Cac8I	GCNNGC	1 cut(s)	447
Cfr10I	RCCGGY	2 cut(s)	41, 445
Cfr13I	GGNCC	2 cut(s)	227, 272
CseI	GACGC	1 cut(s)	533
CviAII	CATG	2 cut(s)	116, 285
CviJI	RGCY	6 cut(s)	24, 318, 336, 419, 493, 517
CviKI_1	RGCY	6 cut(s)	24, 318, 336, 419, 493, 517
DdeI	CTNAG	2 cut(s)	15, 325
DpnI	GATC	3 cut(s)	58, 140, 455
DpnII	GATC	3 cut(s)	56, 138, 453
EaeI	YGGCCR	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	142
Eco47I	GGWCC	2 cut(s)	227, 272
Eco81I	CCTNAGG	1 cut(s)	325
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	119, 288
FaiI	YATR	7 cut(s)	101, 117, 258, 286, 297, 413, 530
FatI	CATG	2 cut(s)	115, 284
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	22, 175
FokI	GGATG	2 cut(s)	82, 326
Fsp4HI	GCNGC	2 cut(s)	22, 175
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	2 cut(s)	22, 175
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	4 cut(s)	42, 52, 217, 446
HgaI	GACGC	1 cut(s)	533
Hin1II	CATG	2 cut(s)	119, 288
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	2 cut(s)	491, 515
HinfI	GANTC	3 cut(s)	147, 188, 436
HpaII	CCGG	4 cut(s)	42, 52, 217, 446
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	4 cut(s)	202, 247, 482, 558
Hpy188I	TCNGA	3 cut(s)	193, 342, 400
Hpy188III	TCNNGA	3 cut(s)	52, 433, 548
Hpy8I	GTNNAC	4 cut(s)	202, 247, 482, 558
HpyAV	CCTTC	3 cut(s)	291, 515, 545
HpyCH4III	ACNGT	2 cut(s)	29, 304
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	15, 325
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	119, 288
Kpn2I	TCCGGA	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	445
KroNI	GCCGGC	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	56, 138, 453
Lsp1109I	GCAGC	2 cut(s)	33, 186
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	345
MalI	GATC	3 cut(s)	58, 140, 455
MboI	GATC	3 cut(s)	56, 138, 453
MboII	GAAGA	5 cut(s)	85, 88, 94, 142, 245
MflI	RGATCY	2 cut(s)	56, 138
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	2 cut(s)	156, 531
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	156, 182
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	7 cut(s)	70, 325, 343, 351, 389, 406, 521
Mox20I	TGGCCA	1 cut(s)	318
MroI	TCCGGA	1 cut(s)	51
MroNI	GCCGGC	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	3 cut(s)	120, 363, 568
Msp20I	TGGCCA	1 cut(s)	318
MspI	CCGG	4 cut(s)	42, 52, 217, 446
MspR9I	CCNGG	2 cut(s)	218, 390
MvaI	CCWGG	1 cut(s)	390
NaeI	GCCGGC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	3 cut(s)	56, 138, 453
NgoMIV	GCCGGC	1 cut(s)	445
NlaIII	CATG	2 cut(s)	119, 288
NlaIV	GGNNCC	3 cut(s)	140, 229, 394
NmeAIII	GCCGAG	1 cut(s)	41
NspI	RCATGY	1 cut(s)	119
PdiI	GCCGGC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	2 cut(s)	23, 176
PleI	GAGTC	2 cut(s)	155, 182
PpsI	GAGTC	2 cut(s)	155, 182
PsiI	TTATAA	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	3 cut(s)	140, 229, 394
PspPI	GGNCC	2 cut(s)	227, 272
PsuI	RGATCY	2 cut(s)	56, 138
SaqAI	TTAA	3 cut(s)	120, 363, 568
SatI	GCNGC	2 cut(s)	22, 175
Sau3AI	GATC	3 cut(s)	56, 138, 453
Sau96I	GGNCC	2 cut(s)	227, 272
SchI	GAGTC	2 cut(s)	156, 182
ScrFI	CCNGG	2 cut(s)	218, 390
SfcI	CTRYAG	1 cut(s)	300
SgrAI	CRCCGGYG	1 cut(s)	41
SinI	GGWCC	2 cut(s)	227, 272
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	2 cut(s)	156, 531
SsiI	CCGC	2 cut(s)	45, 475
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	216, 388
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	29, 304
TaiI	ACGT	1 cut(s)	348
TasI	AATT	2 cut(s)	156, 531
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	3 cut(s)	120, 363, 568
Tru9I	TTAA	3 cut(s)	120, 363, 568
TseI	GCWGC	2 cut(s)	21, 174
TspDTI	ATGAA	5 cut(s)	17, 86, 95, 101, 273
TspGWI	ACGGA	2 cut(s)	82, 429
VpaK11BI	GGWCC	2 cut(s)	227, 272
XagI	CCTNNNNNAGG	1 cut(s)	411
XceI	RCATGY	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.