Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Forward (+)

18620281 .. 18621570

Gene Structure 1290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCCTCCTCCCGCCCTCCGCCGCCAAAGCCTCTCGATCTCGACCTCACGATCGTCTCCGCCAAGCACCTCAAGAACGTCAACTGGAAAAACGGCGACCTCAAGCCCTACGCCGTCTTCTGGGTCGACCCGGACCGCCGCCTCGCCACCAAATCCGACGACTCCGGCTCGACCCGACCCGTCTGGAACGAGCGCTTCACTCTCCCCCTCTCCCTCTCCCTCCACGACTCCCTCCTCACCCTCGAAATCTTCCACTCCAAACCCTCCGACACTCCCAAACCCTTAGTCGGCTCCCTCCGCCTCCCGCTCCGTGACCTACCCGACCCGGACGACCCGACCCGAATCCGCACCTTCGAGCTCGTCCGCCCCTCGGGCCGTCCCCACGGTAAGATCCGCGTGAAGCTCGCGTTCCGTGAACGGCCTCCCCCGCCAGATTACCATAATACCCCTCCTCCTCCGAGCTACTTCTACTCCAGTGCTCCTATGCCTCTACAGCCTTCCGCTCGCGACTACCGCGCTTACTCGCCGTCGCCGTACAGCTCATCTGTCACAGCTTCAGCTCCGACTCAATCACCTTCGCCGCCACCGCCGCCGCCGTACCACTACAGCTCATACTCAGATCCGTATTCAAGCTACTATCCAGGGTACTACTCCAGCGCGCCGCCGCCGATGCCACCGAGGCCGTTCTGGCATGGTGGGCCGTCCGGTGGGCCTTCGGCGCCTCTGGAGTACTCGCAGTATGATCAGAAGGCGAAGAGTGGGAAGATGGGGATGGGGACCGGATTGGCTGTGGGCGCAGTGGCCGGAGCTCTAGGTGGACTGGCATTGGAGGAAGGAATCAGGTATGAAGAAGATAAGATTGCTGACAGGGTGGAGAATGAGTTGGAGCGGGAGCAGATTCGTGACGATTACAGCAACTATCGGGGTGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

312

Amino Acids

34.54

Weight (kDa)

7.83

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	14 - 111	1e-12	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	718
AccBSI	CCGCTC	3 cut(s)	307, 503, 889
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	5 cut(s)	396, 407, 507, 516, 659
AclWI	GGATC	2 cut(s)	385, 614
AcoI	YGGCCR	1 cut(s)	801
AcuI	CTGAAG	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	719
AfaI	GTAC	4 cut(s)	536, 599, 647, 731
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	120, 287, 370, 707
AgsI	TTSAA	1 cut(s)	630
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	9 cut(s)	358, 403, 462, 540, 554, 560, 609, 633, 809
AluI	AGCT	9 cut(s)	358, 403, 462, 540, 554, 560, 609, 633, 809
Alw21I	GWGCWC	3 cut(s)	360, 481, 811
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	385, 614
Ama87I	CYCGRG	1 cut(s)	370
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	7 cut(s)	3, 373, 419, 680, 698, 710, 801
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AspLEI	GCGC	6 cut(s)	195, 518, 659, 661, 721, 797
AspS9I	GGNCC	5 cut(s)	133, 373, 698, 710, 777
AsuC2I	CCSGG	2 cut(s)	131, 326
AsuHPI	GGTGA	2 cut(s)	229, 564
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	2 cut(s)	133, 777
BanI	GGYRCC	1 cut(s)	718
BanII	GRGCYC	2 cut(s)	360, 811
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	3 cut(s)	360, 481, 811
BccI	CCATC	2 cut(s)	760, 766
BceAI	ACGGC	9 cut(s)	98, 109, 360, 434, 511, 517, 580, 667, 685
BciT130I	CCWGG	1 cut(s)	642
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	2 cut(s)	131, 326
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	812
BfmI	CTRYAG	2 cut(s)	491, 604
BfoI	RGCGCY	2 cut(s)	196, 722
BglI	GCCNNNNNGGC	3 cut(s)	372, 679, 688
BisI	GCNGC	7 cut(s)	23, 139, 581, 590, 593, 662, 665
BlsI	GCNGC	7 cut(s)	24, 140, 582, 591, 594, 663, 666
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	3 cut(s)	131, 326, 642
Bme18I	GGWCC	2 cut(s)	133, 777
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	5 cut(s)	133, 373, 698, 710, 777
BmiI	GGNNCC	3 cut(s)	292, 720, 778
BmrFI	CCNGG	3 cut(s)	131, 326, 642
BmsI	GCATC	1 cut(s)	660
BpiI	GAAGAC	1 cut(s)	109
BpmI	CTGGAG	3 cut(s)	457, 637, 746
BpuEI	CTTGAG	2 cut(s)	56, 86
BpuMI	CCSGG	2 cut(s)	131, 326
BsaHI	GRCGYC	1 cut(s)	719
BsaJI	CCNNGG	4 cut(s)	369, 382, 641, 677
BsaWI	WCCGGW	2 cut(s)	704, 779
BsaXI	ACNNNNNCTCC	6 cut(s)	436, 455, 466, 485, 866, 896
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 287, 370, 707
Bse1I	ACTGG	3 cut(s)	89, 474, 825
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	4 cut(s)	369, 382, 641, 677
BseGI	GGATG	1 cut(s)	777
BseLI	CCNNNNNNNGG	4 cut(s)	120, 287, 370, 707
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	3 cut(s)	89, 474, 825
BsePI	GCGCGC	1 cut(s)	657
BseRI	GAGGAG	3 cut(s)	224, 441, 444
Bsh1236I	CGCG	5 cut(s)	396, 407, 507, 516, 659
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	7 cut(s)	5, 375, 421, 682, 700, 712, 803
BshNI	GGYRCC	1 cut(s)	718
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	3 cut(s)	360, 481, 811
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	6 cut(s)	131, 165, 326, 705, 780, 804
BslFI	GGGAC	2 cut(s)	363, 790
BslI	CCNNNNNNNGG	4 cut(s)	120, 287, 370, 707
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	363, 790
BsnI	GGCC	7 cut(s)	5, 375, 421, 682, 700, 712, 803
BsoBI	CYCGRG	1 cut(s)	370
Bsp1286I	GDGCHC	3 cut(s)	360, 481, 811
Bsp143I	GATC	5 cut(s)	37, 51, 390, 619, 742
Bsp68I	TCGCGA	1 cut(s)	507
BspANI	GGCC	7 cut(s)	5, 375, 421, 682, 700, 712, 803
BspCNI	CTCAG	1 cut(s)	629
BspFNI	CGCG	5 cut(s)	396, 407, 507, 516, 659
BspLI	GGNNCC	3 cut(s)	292, 720, 778
BspPI	GGATC	2 cut(s)	385, 614
BspT107I	GGYRCC	1 cut(s)	718
BsrBI	CCGCTC	3 cut(s)	307, 503, 889
BsrI	ACTGG	3 cut(s)	89, 474, 825
BssECI	CCNNGG	4 cut(s)	369, 382, 641, 677
BssHII	GCGCGC	1 cut(s)	657
BssMI	GATC	5 cut(s)	37, 51, 390, 619, 742
BssNI	GRCGYC	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	749
BstACI	GRCGYC	1 cut(s)	719
BstC8I	GCNNGC	3 cut(s)	405, 505, 659
BstDEI	CTNAG	2 cut(s)	283, 616
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	777
BstFNI	CGCG	5 cut(s)	396, 407, 507, 516, 659
BstH2I	RGCGCY	2 cut(s)	196, 722
BstHHI	GCGC	6 cut(s)	195, 518, 659, 661, 721, 797
BstKTI	GATC	5 cut(s)	40, 54, 393, 622, 745
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	37, 51, 390, 619, 742
BstMCI	CGRYCG	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	642
BstSCI	CCNGG	3 cut(s)	129, 324, 640
BstSFI	CTRYAG	2 cut(s)	491, 604
BstUI	CGCG	5 cut(s)	396, 407, 507, 516, 659
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	2 cut(s)	390, 619
BstYI	RGATCY	2 cut(s)	390, 619
BsuRI	GGCC	7 cut(s)	5, 375, 421, 682, 700, 712, 803
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	777
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	2 cut(s)	481, 804
BtuMI	TCGCGA	1 cut(s)	507
Cac8I	GCNNGC	3 cut(s)	405, 505, 659
CfoI	GCGC	6 cut(s)	195, 518, 659, 661, 721, 797
Cfr13I	GGNCC	5 cut(s)	133, 373, 698, 710, 777
CpoI	CGGWCCG	1 cut(s)	133
Csp6I	GTAC	4 cut(s)	535, 598, 646, 730
CspI	CGGWCCG	1 cut(s)	133
CviAII	CATG	1 cut(s)	692
CviQI	GTAC	4 cut(s)	535, 598, 646, 730
DdeI	CTNAG	2 cut(s)	283, 616
DinI	GGCGCC	1 cut(s)	720
DpnI	GATC	5 cut(s)	39, 53, 392, 621, 744
DpnII	GATC	5 cut(s)	37, 51, 390, 619, 742
EaeI	YGGCCR	1 cut(s)	801
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
EciI	GGCGGA	4 cut(s)	9, 49, 287, 353
Ecl136II	GAGCTC	2 cut(s)	358, 809
Eco24I	GRGCYC	2 cut(s)	360, 811
Eco47I	GGWCC	2 cut(s)	133, 777
Eco47III	AGCGCT	1 cut(s)	194
Eco53kI	GAGCTC	2 cut(s)	358, 809
Eco57I	CTGAAG	1 cut(s)	540
Eco88I	CYCGRG	1 cut(s)	370
EcoICRI	GAGCTC	2 cut(s)	358, 809
EcoRII	CCWGG	1 cut(s)	640
EcoT38I	GRGCYC	2 cut(s)	360, 811
EgeI	GGCGCC	1 cut(s)	720
EheI	GGCGCC	1 cut(s)	720
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	1 cut(s)	695
FaiI	YATR	6 cut(s)	441, 485, 613, 693, 741, 846
FaqI	GGGAC	2 cut(s)	363, 790
FatI	CATG	1 cut(s)	691
FauI	CCCGC	4 cut(s)	20, 312, 435, 882
FbaI	TGATCA	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	7 cut(s)	23, 139, 581, 590, 593, 662, 665
FokI	GGATG	1 cut(s)	784
FriOI	GRGCYC	2 cut(s)	360, 811
Fsp4HI	GCNGC	7 cut(s)	23, 139, 581, 590, 593, 662, 665
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	6 cut(s)	194, 517, 658, 660, 720, 796
GluI	GCNGC	7 cut(s)	23, 139, 581, 590, 593, 662, 665
GsuI	CTGGAG	3 cut(s)	457, 637, 746
HaeII	RGCGCY	2 cut(s)	196, 722
HaeIII	GGCC	7 cut(s)	5, 375, 421, 682, 700, 712, 803
HapII	CCGG	6 cut(s)	131, 165, 326, 705, 780, 804
HhaI	GCGC	6 cut(s)	195, 518, 659, 661, 721, 797
Hin1I	GRCGYC	1 cut(s)	719
Hin1II	CATG	1 cut(s)	695
Hin6I	GCGC	6 cut(s)	193, 516, 657, 659, 719, 795
HinP1I	GCGC	6 cut(s)	193, 516, 657, 659, 719, 795
HincII	GTYRAC	2 cut(s)	82, 127
HindII	GTYRAC	2 cut(s)	82, 127
HinfI	GANTC	6 cut(s)	161, 227, 342, 565, 837, 898
HpaII	CCGG	6 cut(s)	131, 165, 326, 705, 780, 804
HphI	GGTGA	2 cut(s)	229, 564
Hpy166II	GTNNAC	4 cut(s)	82, 127, 416, 818
Hpy188I	TCNGA	6 cut(s)	157, 268, 459, 564, 619, 747
Hpy188III	TCNNGA	8 cut(s)	35, 41, 49, 73, 184, 506, 725, 902
Hpy8I	GTNNAC	4 cut(s)	82, 127, 416, 818
Hpy99I	CGWCG	2 cut(s)	161, 532
HpyAV	CCTTC	6 cut(s)	361, 507, 585, 723, 742, 827
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	78
HpyF3I	CTNAG	2 cut(s)	283, 616
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	719
Hsp92II	CATG	1 cut(s)	695
HspAI	GCGC	6 cut(s)	193, 516, 657, 659, 719, 795
KasI	GGCGCC	1 cut(s)	718
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	5 cut(s)	37, 51, 390, 619, 742
LmnI	GCTCC	7 cut(s)	296, 312, 484, 565, 806, 886, 892
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	311, 547, 902
MalI	GATC	5 cut(s)	39, 53, 392, 621, 744
MbiI	CCGCTC	3 cut(s)	307, 503, 889
MboI	GATC	5 cut(s)	37, 51, 390, 619, 742
MboII	GAAGA	6 cut(s)	109, 241, 766, 775, 860, 863
MflI	RGATCY	2 cut(s)	390, 619
MhlI	GDGCHC	3 cut(s)	360, 481, 811
Mly113I	GGCGCC	1 cut(s)	719
MlyI	GAGTC	3 cut(s)	155, 221, 559
MmeI	TCCRAC	4 cut(s)	180, 291, 587, 864
MspI	CCGG	6 cut(s)	131, 165, 326, 705, 780, 804
MspR9I	CCNGG	3 cut(s)	131, 326, 642
MvaI	CCWGG	1 cut(s)	642
MvnI	CGCG	5 cut(s)	396, 407, 507, 516, 659
NarI	GGCGCC	1 cut(s)	719
NciI	CCSGG	2 cut(s)	131, 326
NdeII	GATC	5 cut(s)	37, 51, 390, 619, 742
NlaIII	CATG	1 cut(s)	695
NlaIV	GGNNCC	3 cut(s)	292, 720, 778
NmuCI	GTSAC	3 cut(s)	311, 547, 902
NruI	TCGCGA	1 cut(s)	507
PauI	GCGCGC	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PfeI	GAWTC	3 cut(s)	342, 837, 898
PkrI	GCNGC	7 cut(s)	24, 140, 582, 591, 594, 663, 666
Ple19I	CGATCG	1 cut(s)	54
PleI	GAGTC	3 cut(s)	155, 221, 559
PluTI	GGCGCC	1 cut(s)	722
PpsI	GAGTC	3 cut(s)	155, 221, 559
Psp124BI	GAGCTC	2 cut(s)	360, 811
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	3 cut(s)	292, 720, 778
PspPI	GGNCC	5 cut(s)	133, 373, 698, 710, 777
PsuI	RGATCY	2 cut(s)	390, 619
PteI	GCGCGC	1 cut(s)	657
PvuI	CGATCG	1 cut(s)	54
RruI	TCGCGA	1 cut(s)	507
RsaI	GTAC	4 cut(s)	536, 599, 647, 731
RsaNI	GTAC	4 cut(s)	535, 598, 646, 730
Rsr2I	CGGWCCG	1 cut(s)	133
RsrII	CGGWCCG	1 cut(s)	133
SacI	GAGCTC	2 cut(s)	360, 811
SalI	GTCGAC	1 cut(s)	125
SatI	GCNGC	7 cut(s)	23, 139, 581, 590, 593, 662, 665
Sau3AI	GATC	5 cut(s)	37, 51, 390, 619, 742
Sau96I	GGNCC	5 cut(s)	133, 373, 698, 710, 777
ScaI	AGTACT	1 cut(s)	731
SchI	GAGTC	3 cut(s)	155, 221, 559
ScrFI	CCNGG	3 cut(s)	131, 326, 642
SduI	GDGCHC	3 cut(s)	360, 481, 811
SfaNI	GCATC	1 cut(s)	660
SfcI	CTRYAG	2 cut(s)	491, 604
SfoI	GGCGCC	1 cut(s)	720
SinI	GGWCC	2 cut(s)	133, 777
SmlI	CTYRAG	2 cut(s)	71, 101
SmoI	CTYRAG	2 cut(s)	71, 101
SspDI	GGCGCC	1 cut(s)	718
SspMI	CTAG	1 cut(s)	812
SstI	GAGCTC	2 cut(s)	360, 811
StyD4I	CCNGG	3 cut(s)	129, 324, 640
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	6 cut(s)	36, 42, 126, 170, 243, 354
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	7 cut(s)	25, 141, 583, 592, 595, 664, 667
TfiI	GAWTC	3 cut(s)	342, 837, 898
TscAI	CASTG	2 cut(s)	481, 804
TseFI	GTSAC	3 cut(s)	311, 547, 902
Tsp45I	GTSAC	3 cut(s)	311, 547, 902
TspDTI	ATGAA	1 cut(s)	861
TspGWI	ACGGA	3 cut(s)	299, 401, 612
TspRI	CASTG	2 cut(s)	481, 804
VpaK11BI	GGWCC	2 cut(s)	133, 777
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	812
ZrmI	AGTACT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.