Rh1AG358400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001015
Physical Location & Seq
Forward (+)
59304989 .. 59321144
16156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG358400.1

Sequence Viewer

Length: 714 bp
ATGCGAGTTGCTCCTACAAATGATTTGACCGTTTTGACACGGTGCAAAAGGGGACTTATAATAAGGGACTCCATGATGACGTTACTATCAAAACTTTATTCTGGACTCCATAATCTCAAAAACTTATGCACATACAGCTCCGCAAATATGAAAACAAACCCTCAGAGCAGCCACCGTTCTGCTTACACCGGCGGTTTCCGGAGATCCTCGGCACTGATGAAGAAGATGAAGATGAAAGAGAAAGTTATAGAAAAGAAAGTGCATGTTAAGTCCTTGAAGATTTGGATCCATGAAGTCGTGGGAATCGACCCCCCAAGTTGCAGCACCCTACCCGACTCCGAACGGGTCTACCAAATCGTGTGCCGGGTTGATGGACCCGAAGAAATAGAAGTCAACGCCTTTTACGAAAAGGCAAAAGGACCAAATCCTTCATGGTTCAAATACACTACAGTTCCTTTGGCTGGCCACCCCTTAGGGGAGGGCTTTCTGAATGTGGAGGTATTGAGGTTTAATAGTAAGGAAAACCTCACCGACCCTGGAACTTCCGACTGCCCTAGCGTAGGGGCTGTCAGTCGGTTCAGGATTCCGTTGCCGGCGACGATCAATGACAGAATAGAACGGCAGTGTGAACTTGTGAAGCTTGATGGGTTTGGCAACCTCAAGCTTGAAGGGTTTATAATTTTGTCAATGCGTCTGGAAGGATTTACCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

237

Amino Acids

26.66

Weight (kDa)

9.36

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 59, 677
AccI GTMKAC 1 cut(s) 348
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 2 cut(s) 141, 192
AclWI GGATC 3 cut(s) 198, 280, 293
AcoI YGGCCR 1 cut(s) 463
AfiI CCNNNNNNNGG 3 cut(s) 461, 475, 560
AgsI TTSAA 3 cut(s) 277, 439, 668
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 3 cut(s) 138, 640, 664
AluI AGCT 3 cut(s) 138, 640, 664
AlwI GGATC 3 cut(s) 198, 280, 293
Aor13HI TCCGGA 1 cut(s) 198
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 168, 321
AspS9I GGNCC 2 cut(s) 374, 419
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 2 cut(s) 374, 419
AxyI CCTNAGG 1 cut(s) 472
BalI TGGCCA 1 cut(s) 465
BamHI GGATCC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 180, 333
BccI CCATC 2 cut(s) 365, 638
BceAI ACGGC 1 cut(s) 635
BciT130I CCWGG 1 cut(s) 537
BcnI CCSGG 1 cut(s) 365
BfaI CTAG 1 cut(s) 555
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 2 cut(s) 169, 322
BlsI GCNGC 2 cut(s) 170, 323
Bme1390I CCNGG 2 cut(s) 365, 537
Bme18I GGWCC 2 cut(s) 374, 419
BmgT120I GGNCC 2 cut(s) 374, 419
BmiI GGNNCC 2 cut(s) 287, 376
BmrFI CCNGG 2 cut(s) 365, 537
BpuEI CTTGAG 1 cut(s) 644
BpuMI CCSGG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 207, 535
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 3 cut(s) 461, 475, 560
Bse118I RCCGGY 2 cut(s) 188, 592
Bse21I CCTNAGG 1 cut(s) 472
Bse8I GATNNNNATC 1 cut(s) 284
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 2 cut(s) 207, 535
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 3 cut(s) 461, 475, 560
BseMII CTCAG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 180, 333
BshFI GGCC 1 cut(s) 465
BsiSI CCGG 4 cut(s) 189, 199, 364, 593
BslFI GGGAC 2 cut(s) 66, 80
BslI CCNNNNNNNGG 3 cut(s) 461, 475, 560
BsmFI GGGAC 2 cut(s) 66, 80
BsnI GGCC 1 cut(s) 465
Bsp13I TCCGGA 1 cut(s) 198
Bsp143I GATC 3 cut(s) 203, 285, 600
BspACI CCGC 2 cut(s) 141, 192
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 1 cut(s) 175
BspEI TCCGGA 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 287, 376
BspPI GGATC 3 cut(s) 198, 280, 293
BsrFI RCCGGY 2 cut(s) 188, 592
BssAI RCCGGY 2 cut(s) 188, 592
BssECI CCNNGG 2 cut(s) 207, 535
BssMI GATC 3 cut(s) 203, 285, 600
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 4 cut(s) 31, 42, 176, 451
BstC8I GCNNGC 2 cut(s) 463, 594
BstDEI CTNAG 2 cut(s) 162, 472
BstENI CCTNNNNNAGG 1 cut(s) 558
BstKTI GATC 3 cut(s) 206, 288, 603
BstMBI GATC 3 cut(s) 203, 285, 600
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 537
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 363, 535
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 180, 333
BstX2I RGATCY 2 cut(s) 203, 285
BstYI RGATCY 2 cut(s) 203, 285
Bsu36I CCTNAGG 1 cut(s) 472
BsuRI GGCC 1 cut(s) 465
BtsI GCAGTG 1 cut(s) 629
BtsIMutI CAGTG 2 cut(s) 212, 629
Cac8I GCNNGC 2 cut(s) 463, 594
Cfr10I RCCGGY 2 cut(s) 188, 592
Cfr13I GGNCC 2 cut(s) 374, 419
CseI GACGC 1 cut(s) 680
CviAII CATG 4 cut(s) 73, 263, 290, 432
CviJI RGCY 8 cut(s) 138, 171, 461, 465, 483, 566, 640, 664
CviKI_1 RGCY 8 cut(s) 138, 171, 461, 465, 483, 566, 640, 664
DdeI CTNAG 2 cut(s) 162, 472
DpnI GATC 3 cut(s) 205, 287, 602
DpnII GATC 3 cut(s) 203, 285, 600
EaeI YGGCCR 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 374, 419
Eco81I CCTNAGG 1 cut(s) 472
EcoNI CCTNNNNNAGG 1 cut(s) 558
EcoRII CCWGG 1 cut(s) 535
FaeI CATG 4 cut(s) 76, 266, 293, 435
FaqI GGGAC 2 cut(s) 66, 80
FatI CATG 4 cut(s) 72, 262, 289, 431
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 169, 322
Fsp4HI GCNGC 2 cut(s) 169, 322
FspBI CTAG 1 cut(s) 555
GluI GCNGC 2 cut(s) 169, 322
HaeIII GGCC 1 cut(s) 465
HapII CCGG 4 cut(s) 189, 199, 364, 593
HgaI GACGC 1 cut(s) 680
Hin1II CATG 4 cut(s) 76, 266, 293, 435
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 2 cut(s) 638, 662
HinfI GANTC 5 cut(s) 68, 105, 303, 335, 583
HpaII CCGG 4 cut(s) 189, 199, 364, 593
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 3 cut(s) 349, 394, 629
Hpy188I TCNGA 4 cut(s) 165, 340, 489, 547
Hpy188III TCNNGA 4 cut(s) 102, 199, 580, 695
Hpy8I GTNNAC 3 cut(s) 349, 394, 629
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 3 cut(s) 438, 662, 692
HpyCH4III ACNGT 4 cut(s) 31, 42, 176, 451
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 45, 129, 262, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 162, 472
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 4 cut(s) 76, 266, 293, 435
Kpn2I TCCGGA 1 cut(s) 198
KroI GCCGGC 1 cut(s) 592
KroNI GCCGGC 1 cut(s) 594
Kzo9I GATC 3 cut(s) 203, 285, 600
LmnI GCTCC 2 cut(s) 16, 143
Lsp1109I GCAGC 2 cut(s) 180, 333
MaeI CTAG 1 cut(s) 555
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 81
MalI GATC 3 cut(s) 205, 287, 602
MboI GATC 3 cut(s) 203, 285, 600
MboII GAAGA 5 cut(s) 232, 235, 241, 289, 392
MflI RGATCY 2 cut(s) 203, 285
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 1 cut(s) 678
MluNI TGGCCA 1 cut(s) 465
MlyI GAGTC 3 cut(s) 62, 99, 329
MmeI TCCRAC 1 cut(s) 570
MnlI CCTC 7 cut(s) 171, 217, 472, 490, 498, 536, 668
Mox20I TGGCCA 1 cut(s) 465
MroI TCCGGA 1 cut(s) 198
MroNI GCCGGC 1 cut(s) 592
MscI TGGCCA 1 cut(s) 465
MseI TTAA 2 cut(s) 267, 510
Msp20I TGGCCA 1 cut(s) 465
MspI CCGG 4 cut(s) 189, 199, 364, 593
MspR9I CCNGG 2 cut(s) 365, 537
MvaI CCWGG 1 cut(s) 537
MwoI GCNNNNNNNGC 1 cut(s) 135
NaeI GCCGGC 1 cut(s) 594
NciI CCSGG 1 cut(s) 365
NdeII GATC 3 cut(s) 203, 285, 600
NgoMIV GCCGGC 1 cut(s) 592
NlaIII CATG 4 cut(s) 76, 266, 293, 435
NlaIV GGNNCC 2 cut(s) 287, 376
NmeAIII GCCGAG 1 cut(s) 188
NspI RCATGY 1 cut(s) 266
PcsI WCGNNNNNNNCGW 2 cut(s) 303, 402
PdiI GCCGGC 1 cut(s) 594
PfeI GAWTC 2 cut(s) 303, 583
PkrI GCNGC 2 cut(s) 170, 323
PleI GAGTC 3 cut(s) 62, 99, 329
PpsI GAGTC 3 cut(s) 62, 99, 329
PsiI TTATAA 2 cut(s) 59, 677
Psp6I CCWGG 1 cut(s) 535
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 2 cut(s) 287, 376
PspPI GGNCC 2 cut(s) 374, 419
PsuI RGATCY 2 cut(s) 203, 285
SaqAI TTAA 2 cut(s) 267, 510
SatI GCNGC 2 cut(s) 169, 322
Sau3AI GATC 3 cut(s) 203, 285, 600
Sau96I GGNCC 2 cut(s) 374, 419
SchI GAGTC 3 cut(s) 62, 99, 329
ScrFI CCNGG 2 cut(s) 365, 537
SetI ASST 9 cut(s) 83, 140, 501, 509, 528, 642, 660, 666, 710
SfcI CTRYAG 1 cut(s) 447
SgrAI CRCCGGYG 1 cut(s) 188
SinI GGWCC 2 cut(s) 374, 419
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 1 cut(s) 678
SsiI CCGC 2 cut(s) 141, 192
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 363, 535
TaaI ACNGT 4 cut(s) 31, 42, 176, 451
TaiI ACGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 306
TasI AATT 1 cut(s) 678
TfiI GAWTC 2 cut(s) 303, 583
Tru1I TTAA 2 cut(s) 267, 510
Tru9I TTAA 2 cut(s) 267, 510
TscAI CASTG 2 cut(s) 219, 629
TseI GCWGC 2 cut(s) 168, 321
TspDTI ATGAA 6 cut(s) 164, 233, 242, 248, 306, 420
TspGWI ACGGA 1 cut(s) 576
TspRI CASTG 2 cut(s) 219, 629
VpaK11BI GGWCC 2 cut(s) 374, 419
XagI CCTNNNNNAGG 1 cut(s) 558
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.