Rroxscaffold_5G00356670

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
36048688 .. 36049161
474 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00356670.1

Sequence Viewer

Length: 318 bp
ATGGCCTCCTCTCGCCCTCTGCCGTCGAAGCCTCCCGATATCAACCTCACTATCGTCTCCGCCAAGCACCTGAAGAACTTCAACTGGAATAACGATGACCTCAAGCCCTACGCCGTCTTGTCGGTCCACCCCGAGTCCCCGACCTCCGCCTCGCCACCAAATCCGACGACTCCGGCTCCACCCGACCCATCTGGAATGAGTGCTTCACTCTCCCCCTCTCCTTCTCCCTCCCACGACTCCTTCCTCACCCTTGAAATCTTCCACTCCAAACCCTTAGTCGGCATAGAGGCCTGCACTGCCACTAACTTGATCAGATAG
Functional Annotation

Protein Analysis

105

Amino Acids

11.15

Weight (kDa)

6.38

Isoelectric Point (pI)

71.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 60, 147
AcuI CTGAAG 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 82, 254
Alw26I GTCTC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 3, 288
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
Asp700I GAANNNNTTC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 124
BccI CCATC 1 cut(s) 196
BceAI ACGGC 2 cut(s) 7, 98
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 277
BshFI GGCC 2 cut(s) 5, 290
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 2 cut(s) 5, 290
BsoBI CYCGRG 1 cut(s) 131
Bsp143I GATC 1 cut(s) 309
BspACI CCGC 2 cut(s) 60, 147
BspANI GGCC 2 cut(s) 5, 290
BspLI GGNNCC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 89
BssMI GATC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 1 cut(s) 274
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 2 cut(s) 28, 296
BsuRI GGCC 2 cut(s) 5, 290
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 124
CviJI RGCY 5 cut(s) 5, 31, 106, 176, 290
CviKI_1 RGCY 5 cut(s) 5, 31, 106, 176, 290
DdeI CTNAG 1 cut(s) 274
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
EciI GGCGGA 2 cut(s) 49, 136
Eco147I AGGCCT 1 cut(s) 290
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 131
EcoRV GATATC 1 cut(s) 40
Esp3I CGTCTC 1 cut(s) 61
FaiI YATR 1 cut(s) 284
FaqI GGGAC 1 cut(s) 121
FbaI TGATCA 1 cut(s) 309
HaeIII GGCC 2 cut(s) 5, 290
HapII CCGG 1 cut(s) 173
HinfI GANTC 3 cut(s) 134, 169, 236
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 165, 314
Hpy188III TCNNGA 2 cut(s) 35, 192
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 2 cut(s) 28, 169
HpyAV CCTTC 2 cut(s) 231, 250
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 296
HpyF3I CTNAG 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 70, 83, 177, 186, 304
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 2 cut(s) 85, 250
MlyI GAGTC 3 cut(s) 143, 163, 230
MmeI TCCRAC 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 77
MspI CCGG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 28, 296
NdeII GATC 1 cut(s) 309
NlaIV GGNNCC 1 cut(s) 177
PceI AGGCCT 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 77
PleI GAGTC 3 cut(s) 142, 163, 230
PpsI GAGTC 3 cut(s) 142, 163, 230
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 124
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 3 cut(s) 143, 163, 230
SetI ASST 4 cut(s) 48, 72, 102, 146
SinI GGWCC 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 2 cut(s) 60, 147
StuI AGGCCT 1 cut(s) 290
TaqI TCGA 1 cut(s) 26
TaqII GACCGA 1 cut(s) 112
TscAI CASTG 1 cut(s) 301
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.