RchiOBHm_Chr4g0411991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001015
Physical Location & Seq
Forward (+)
35739132 .. 35740783
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38275

Sequence Viewer

Length: 414 bp
ATGAGAAACTCAATCGAACCGAGCAACTTAACAAGAGATTCAAGAAATTCGAACCCAGAAATCGAACCCAAAATTTCTCCAAGCTTGAGCCACCGAGCTTCACAGAGTCACAGTCGAAGAGAACAAACCAAGAGTGAAGAATTCGAGCCTTCGACTGAAAAGTGTAAACCCAGAAATTGTGAGATTGTGAGAATCATGATTCATGAGAGAGGCAGCAAATCAACTAAAAGTCTAAAACCCAGAAATTCGACTCAAAATTTCCCTCTTTCATTTCTCAATTCTGCTTTTGGGTTTCTCAAGTTTGGCCGTCCTTGGGGTTTTTGTTTTCACACAGGGCTCTGCTACTACAGAAAGTGCTTTTCCTCCACGCATTTCCTCAGCAAAAGTATGGCACACCAGAACAGGATGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.94

Weight (kDa)

10.04

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 5 cut(s) 46, 72, 140, 244, 256
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 1 cut(s) 42
AluBI AGCT 2 cut(s) 84, 98
AluI AGCT 2 cut(s) 84, 98
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 213
ApoI RAATTY 5 cut(s) 46, 72, 140, 244, 256
AsuII TTCGAA 1 cut(s) 50
BanII GRGCYC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 225
BceAI ACGGC 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 346
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
BmsI GCATC 1 cut(s) 396
Bpu10I CCTNAGC 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 106, 281
BsaJI CCNNGG 1 cut(s) 311
Bsc4I CCNNNNNNNGG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 313
BsnI GGCC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 339
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 1 cut(s) 390
BspHI TCATGA 2 cut(s) 195, 202
BspT104I TTCGAA 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 306
BtsCI GGATG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 409
CciI TCATGA 2 cut(s) 195, 202
CviAII CATG 2 cut(s) 196, 203
CviJI RGCY 6 cut(s) 84, 90, 98, 148, 306, 337
CviKI_1 RGCY 6 cut(s) 84, 90, 98, 148, 306, 337
DdeI CTNAG 1 cut(s) 377
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 2 cut(s) 199, 206
FaiI YATR 3 cut(s) 197, 204, 389
FatI CATG 2 cut(s) 195, 202
Fnu4HI GCNGC 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 214
HaeIII GGCC 1 cut(s) 306
Hin1II CATG 2 cut(s) 199, 206
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 5 cut(s) 38, 106, 192, 199, 250
Hpy166II GTNNAC 1 cut(s) 167
Hpy188III TCNNGA 3 cut(s) 42, 196, 203
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 409
HpyF3I CTNAG 1 cut(s) 377
Hsp92II CATG 2 cut(s) 199, 206
LpnPI CCDG 6 cut(s) 69, 184, 253, 318, 388, 410
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 2 cut(s) 129, 149
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 7 cut(s) 46, 72, 140, 175, 244, 256, 277
MlyI GAGTC 2 cut(s) 115, 244
MnlI CCTC 4 cut(s) 203, 273, 373, 386
MseI TTAA 1 cut(s) 29
NlaIII CATG 2 cut(s) 199, 206
NmuCI GTSAC 1 cut(s) 107
NspV TTCGAA 1 cut(s) 50
PagI TCATGA 2 cut(s) 195, 202
PfeI GAWTC 3 cut(s) 38, 192, 199
PkrI GCNGC 1 cut(s) 215
PleI GAGTC 2 cut(s) 114, 244
PpsI GAGTC 2 cut(s) 114, 244
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 1 cut(s) 214
SchI GAGTC 2 cut(s) 115, 244
SduI GDGCHC 1 cut(s) 339
SetI ASST 2 cut(s) 86, 100
SfaNI GCATC 1 cut(s) 396
SfcI CTRYAG 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 85, 296
SmoI CTYRAG 2 cut(s) 85, 296
Sse9I AATT 7 cut(s) 46, 72, 140, 175, 244, 256, 277
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 7 cut(s) 15, 50, 63, 115, 144, 152, 248
TasI AATT 7 cut(s) 46, 72, 140, 175, 244, 256, 277
TfiI GAWTC 3 cut(s) 38, 192, 199
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 191, 258
XapI RAATTY 5 cut(s) 46, 72, 140, 244, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.