Rmu_ssc0000244.1_g000021

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000244.1
Physical Location & Seq
Reverse (-)
127966 .. 128816
851 bp
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UTR
Exon/CDS
Intron
Rmu_ssc0000244.1_g000021.1.cds

Sequence Viewer

Length: 276 bp
atgatcgtctccgccaagcacctgaagaacgtcaactggaagaacgacgacctcaagccctacgcattcttctgggtcgaccccgacctcttcctcaccaccaagtccagttgtggaggtgggttcgaaggaggaagagaagtggaggaggttgagggagcaagaagtgaagatggagagagctggaatcttaaagatctggaatcaaaaaacaaaatcgaagagttagagaaattggatttgtctcagagtaatagagatgggagagacctctga
Functional Annotation

Protein Analysis

91

Amino Acids

10.36

Weight (kDa)

4.66

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AciI CCGC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 44
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 13, 249, 261
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 126
BccI CCATC 2 cut(s) 167, 254
BcoDI GTCTC 3 cut(s) 13, 249, 261
BglII AGATCT 1 cut(s) 196
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 261
Bse1I ACTGG 2 cut(s) 41, 108
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 2 cut(s) 41, 108
BseRI GAGGAG 1 cut(s) 161
BsmAI GTCTC 3 cut(s) 13, 249, 261
BsmBI CGTCTC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 261
Bsp119I TTCGAA 1 cut(s) 126
Bsp143I GATC 2 cut(s) 3, 196
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 259
BspT104I TTCGAA 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 261
BsrI ACTGG 2 cut(s) 41, 108
BssMI GATC 2 cut(s) 3, 196
Bst6I CTCTTC 3 cut(s) 95, 130, 216
BstBI TTCGAA 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 246
BstKTI GATC 2 cut(s) 6, 199
BstMAI GTCTC 3 cut(s) 13, 249, 261
BstMBI GATC 2 cut(s) 3, 196
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
CviJI RGCY 2 cut(s) 58, 183
CviKI_1 RGCY 2 cut(s) 58, 183
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 5, 198
DpnII GATC 2 cut(s) 3, 196
Eam1104I CTCTTC 3 cut(s) 95, 130, 216
EarI CTCTTC 3 cut(s) 95, 130, 216
Eco31I GGTCTC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 44
Esp3I CGTCTC 1 cut(s) 13
FblI GTMKAC 1 cut(s) 78
HincII GTYRAC 2 cut(s) 34, 79
HindII GTYRAC 2 cut(s) 34, 79
HinfI GANTC 2 cut(s) 187, 203
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 34, 79
Hpy188I TCNGA 2 cut(s) 249, 275
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 34, 79
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 30
Kzo9I GATC 2 cut(s) 3, 196
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 6 cut(s) 22, 35, 58, 121, 169, 185
MaeII ACGT 1 cut(s) 30
MalI GATC 2 cut(s) 5, 198
MboI GATC 2 cut(s) 3, 196
MboII GAAGA 7 cut(s) 37, 52, 61, 82, 147, 182, 233
MflI RGATCY 1 cut(s) 196
MluCI AATT 1 cut(s) 233
MnlI CCTC 8 cut(s) 62, 98, 104, 110, 125, 139, 142, 148
MseI TTAA 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 65
NdeII GATC 2 cut(s) 3, 196
NspV TTCGAA 1 cut(s) 126
PctI GAATGC 1 cut(s) 65
PfeI GAWTC 2 cut(s) 187, 203
PsuI RGATCY 1 cut(s) 196
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 2 cut(s) 3, 196
SetI ASST 8 cut(s) 24, 33, 54, 90, 121, 153, 185, 273
SfuI TTCGAA 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 233
SsiI CCGC 1 cut(s) 12
TaiI ACGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 78, 126, 219
TasI AATT 1 cut(s) 233
TfiI GAWTC 2 cut(s) 187, 203
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.