Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Reverse (-)

8615549 .. 8616785

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCTCCACCGCCTTCCGCTCGCGACTACAGGGCCTACTCGCCGTCGCCGTACGGCTCTTCCGTGCCAGCTTCGGCTCCAACTCCGGCAGCTTCGCCTCCGCCGCCGCCGTACCACTACAGCTCCTATTCAGATCCGTATTCGAGTTACTATCCGGGGTACTACTCCAGCGCGCCGCCGCCGATGCCACCGAGGCCGTTCTTCGATCGGCCAGTGAACTACGGCGGGCCAGGTGGGCCGTCCGGTGGGCCTTCGGCGCCTCTGGAGTACTCACACTATGATCAGAAGCCAAAGAGCGGGAAGATGGGGTTGGGAACCGGATTGGCTGTGGGCGCAGTGGCTGGAGCTCTAGGTGGACTGGCATTGGAAGAAGGAATAAGGTATGAAGAAGATAAGATTGCTGACAGGGTTGAGAATGACTTGGAGCGTGAGCAGCTGCGTGACGATTACAGCAATTATCGGGCCGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

157

Amino Acids

16.86

Weight (kDa)

4.93

Isoelectric Point (pI)

69.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AccBSI	CCGCTC	2 cut(s)	20, 297
AccII	CGCG	2 cut(s)	24, 173
AciI	CCGC	9 cut(s)	11, 18, 101, 104, 107, 176, 179, 225, 297
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	4 cut(s)	53, 113, 161, 269
AfiI	CCNNNNNNNGG	2 cut(s)	245, 296
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	5 cut(s)	71, 92, 123, 347, 436
AluI	AGCT	5 cut(s)	71, 92, 123, 347, 436
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	7 cut(s)	33, 194, 209, 227, 236, 248, 462
ApeKI	GCWGC	3 cut(s)	89, 433, 436
AspLEI	GCGC	4 cut(s)	173, 175, 259, 335
AspS9I	GGNCC	5 cut(s)	33, 227, 236, 248, 462
AsuC2I	CCSGG	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	101, 423, 445
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	7 cut(s)	28, 34, 70, 94, 181, 223, 238
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	156
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	28, 118
BfoI	RGCGCY	1 cut(s)	260
BglI	GCCNNNNNGGC	2 cut(s)	193, 235
BisI	GCNGC	7 cut(s)	90, 104, 107, 176, 179, 434, 437
BlsI	GCNGC	7 cut(s)	91, 105, 108, 177, 180, 435, 438
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	156, 231
BmgT120I	GGNCC	5 cut(s)	33, 227, 236, 248, 462
BmiI	GGNNCC	3 cut(s)	78, 258, 316
BmrFI	CCNGG	2 cut(s)	156, 231
BmsI	GCATC	1 cut(s)	174
BpmI	CTGGAG	3 cut(s)	151, 284, 363
BpuMI	CCSGG	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	155, 191
BsaWI	WCCGGW	2 cut(s)	242, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 296
Bse1I	ACTGG	2 cut(s)	212, 363
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	155, 191
BseLI	CCNNNNNNNGG	2 cut(s)	245, 296
BseNI	ACTGG	2 cut(s)	212, 363
BsePI	GCGCGC	1 cut(s)	171
BseXI	GCAGC	3 cut(s)	101, 423, 445
Bsh1236I	CGCG	2 cut(s)	24, 173
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	7 cut(s)	35, 196, 211, 229, 238, 250, 464
BshNI	GGYRCC	1 cut(s)	256
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	4 cut(s)	86, 155, 243, 318
BsiWI	CGTACG	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	245, 296
BsnI	GGCC	7 cut(s)	35, 196, 211, 229, 238, 250, 464
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	133, 205, 280
Bsp68I	TCGCGA	1 cut(s)	24
BspACI	CCGC	9 cut(s)	11, 18, 101, 104, 107, 176, 179, 225, 297
BspANI	GGCC	7 cut(s)	35, 196, 211, 229, 238, 250, 464
BspFNI	CGCG	2 cut(s)	24, 173
BspLI	GGNNCC	3 cut(s)	78, 258, 316
BspPI	GGATC	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	256
BsrBI	CCGCTC	2 cut(s)	20, 297
BsrI	ACTGG	2 cut(s)	212, 363
BssECI	CCNNGG	2 cut(s)	155, 191
BssHII	GCGCGC	1 cut(s)	171
BssMI	GATC	3 cut(s)	133, 205, 280
BssNI	GRCGYC	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	22, 69, 173, 227
BstFNI	CGCG	2 cut(s)	24, 173
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	4 cut(s)	173, 175, 259, 335
BstKTI	GATC	3 cut(s)	136, 208, 283
BstMBI	GATC	3 cut(s)	133, 205, 280
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 103, 184, 193, 235, 256, 332, 433
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	154, 229
BstSFI	CTRYAG	2 cut(s)	28, 118
BstUI	CGCG	2 cut(s)	24, 173
BstV1I	GCAGC	3 cut(s)	101, 423, 445
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	7 cut(s)	35, 196, 211, 229, 238, 250, 464
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	219, 342
BtuMI	TCGCGA	1 cut(s)	24
Cac8I	GCNNGC	4 cut(s)	22, 69, 173, 227
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	4 cut(s)	173, 175, 259, 335
Cfr13I	GGNCC	5 cut(s)	33, 227, 236, 248, 462
Csp6I	GTAC	4 cut(s)	52, 112, 160, 268
CviQI	GTAC	4 cut(s)	52, 112, 160, 268
DinI	GGCGCC	1 cut(s)	258
DpnI	GATC	3 cut(s)	135, 207, 282
DpnII	GATC	3 cut(s)	133, 205, 280
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	349
EgeI	GGCGCC	1 cut(s)	258
EheI	GGCGCC	1 cut(s)	258
FaiI	YATR	2 cut(s)	279, 384
FauI	CCCGC	2 cut(s)	218, 290
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	7 cut(s)	90, 104, 107, 176, 179, 434, 437
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	7 cut(s)	90, 104, 107, 176, 179, 434, 437
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	4 cut(s)	172, 174, 258, 334
GluI	GCNGC	7 cut(s)	90, 104, 107, 176, 179, 434, 437
GsuI	CTGGAG	3 cut(s)	151, 284, 363
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	7 cut(s)	35, 196, 211, 229, 238, 250, 464
HapII	CCGG	4 cut(s)	86, 155, 243, 318
HhaI	GCGC	4 cut(s)	173, 175, 259, 335
Hin1I	GRCGYC	1 cut(s)	257
Hin6I	GCGC	4 cut(s)	171, 173, 257, 333
HinP1I	GCGC	4 cut(s)	171, 173, 257, 333
HpaII	CCGG	4 cut(s)	86, 155, 243, 318
Hpy166II	GTNNAC	2 cut(s)	217, 356
Hpy188I	TCNGA	2 cut(s)	133, 285
Hpy188III	TCNNGA	2 cut(s)	23, 263
Hpy8I	GTNNAC	2 cut(s)	217, 356
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	24, 261, 365
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 103, 184, 193, 235, 256, 332, 433
Hsp92I	GRCGYC	1 cut(s)	257
HspAI	GCGC	4 cut(s)	171, 173, 257, 333
KasI	GGCGCC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	133, 205, 280
LguI	GCTCTTC	1 cut(s)	64
LmnI	GCTCC	4 cut(s)	82, 128, 344, 424
Lsp1109I	GCAGC	3 cut(s)	101, 423, 445
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	146, 440
MalI	GATC	3 cut(s)	135, 207, 282
MbiI	CCGCTC	2 cut(s)	20, 297
MboI	GATC	3 cut(s)	133, 205, 280
MboII	GAAGA	6 cut(s)	51, 193, 313, 380, 398, 401
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	1 cut(s)	454
Mly113I	GGCGCC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	4 cut(s)	15, 108, 186, 270
MspA1I	CMGCKG	1 cut(s)	436
MspI	CCGG	4 cut(s)	86, 155, 243, 318
MspR9I	CCNGG	2 cut(s)	156, 231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	2 cut(s)	24, 173
MwoI	GCNNNNNNNGC	8 cut(s)	10, 103, 184, 193, 235, 256, 332, 433
NarI	GGCGCC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	133, 205, 280
NlaIV	GGNNCC	3 cut(s)	78, 258, 316
NmuCI	GTSAC	1 cut(s)	440
NruI	TCGCGA	1 cut(s)	24
PauI	GCGCGC	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	2 cut(s)	47, 60
Pfl23II	CGTACG	1 cut(s)	51
PkrI	GCNGC	7 cut(s)	91, 105, 108, 177, 180, 435, 438
Ple19I	CGATCG	1 cut(s)	208
PluTI	GGCGCC	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	78, 258, 316
PspPI	GGNCC	5 cut(s)	33, 227, 236, 248, 462
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	133
PteI	GCGCGC	1 cut(s)	171
PvuI	CGATCG	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	436
RruI	TCGCGA	1 cut(s)	24
RsaI	GTAC	4 cut(s)	53, 113, 161, 269
RsaNI	GTAC	4 cut(s)	52, 112, 160, 268
SacI	GAGCTC	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	64
SatI	GCNGC	7 cut(s)	90, 104, 107, 176, 179, 434, 437
Sau3AI	GATC	3 cut(s)	133, 205, 280
Sau96I	GGNCC	5 cut(s)	33, 227, 236, 248, 462
ScaI	AGTACT	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	156, 231
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	8 cut(s)	73, 94, 125, 235, 349, 355, 383, 438
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	2 cut(s)	28, 118
SfiI	GGCCNNNNNGGCC	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	258
Sse9I	AATT	1 cut(s)	454
SsiI	CCGC	9 cut(s)	11, 18, 101, 104, 107, 176, 179, 225, 297
SspDI	GGCGCC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	349
StyD4I	CCNGG	2 cut(s)	154, 229
TaqI	TCGA	2 cut(s)	143, 204
TasI	AATT	1 cut(s)	454
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	4 cut(s)	106, 109, 178, 181
TscAI	CASTG	2 cut(s)	219, 342
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	3 cut(s)	89, 433, 436
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	2 cut(s)	52, 126
TspRI	CASTG	2 cut(s)	219, 342
XspI	CTAG	1 cut(s)	350
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.