Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Reverse (-)

16202599 .. 16205478

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG153800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATCGTCTCCGCCAAGCACCTGAAGAACGTCAACTGGAAGAACGACGACCTCAAGCCCTACGCATTCTTCTGGGTCGACCCCGACCTCCTCCTCACCACCAAATCCGACGACTCCGGCTCCACTCGATCCATCTGGAATAAGCGCATCACTTTCCCCCTCTCCTTCTCCCTCCACGACTCCTTCCTCACCCTCGAAATCTTCCACTCCAAACCCTCCGACACTCCCAAACCCTTAGTCGAAAAGAGAGGAGCAGGTTGTTTTTTGCATGTTTTCGTTTTTCTGAAGTTTGCTAAATTCGGGTCCGGCGCTGACGATACTTCCAATACTAAGGAAGAGCACATTGAAATTGCCAAAGCCAAGAAGAAAGTACGAGAGATAGAGTTGTGCTCATCTGATGAAGAGCTTGAAACTCAGGTCAAAGGCTTGCAGTATGTTATACGCAAAAGAGCATTCTGTTTAGAAAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

157

Amino Acids

17.99

Weight (kDa)

8.38

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	2 cut(s)	44, 305
AfaI	GTAC	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	347, 410
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw21I	GWGCWC	2 cut(s)	342, 392
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	296
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	2 cut(s)	147, 311
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	88, 181
AvaII	GGWCC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	342, 392
BccI	CCATC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	13
BfoI	RGCGCY	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	121, 304
BmsI	GCATC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpuEI	CTTGAG	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bse1I	ACTGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	3 cut(s)	80, 83, 264
BsiHKAI	GWGCWC	2 cut(s)	342, 392
BsiSI	CCGG	2 cut(s)	117, 306
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
BsmI	GAATGC	2 cut(s)	65, 452
Bsp1286I	GDGCHC	2 cut(s)	342, 392
Bsp143I	GATC	2 cut(s)	3, 128
BspACI	CCGC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	121, 304
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	123
BspQI	GCTCTTC	2 cut(s)	330, 396
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	3, 128
Bst6I	CTCTTC	2 cut(s)	330, 396
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	235, 330, 414
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	147, 311
BstKTI	GATC	2 cut(s)	6, 131
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	2 cut(s)	3, 128
BstNSI	RCATGY	1 cut(s)	272
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	428
CfoI	GCGC	2 cut(s)	147, 311
Cfr13I	GGNCC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	5 cut(s)	58, 120, 359, 406, 426
CviKI_1	RGCY	5 cut(s)	58, 120, 359, 406, 426
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	235, 330, 414
DpnI	GATC	2 cut(s)	5, 130
DpnII	GATC	2 cut(s)	3, 128
Eam1104I	CTCTTC	2 cut(s)	330, 396
EarI	CTCTTC	2 cut(s)	330, 396
Eco47I	GGWCC	1 cut(s)	303
Eco57I	CTGAAG	2 cut(s)	44, 305
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	1 cut(s)	272
FaiI	YATR	3 cut(s)	270, 435, 440
FatI	CATG	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	78
GlaI	GCGC	2 cut(s)	146, 310
HaeII	RGCGCY	1 cut(s)	312
HapII	CCGG	2 cut(s)	117, 306
HhaI	GCGC	2 cut(s)	147, 311
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	2 cut(s)	145, 309
HinP1I	GCGC	2 cut(s)	145, 309
HincII	GTYRAC	2 cut(s)	34, 79
HindII	GTYRAC	2 cut(s)	34, 79
HinfI	GANTC	2 cut(s)	113, 179
HpaII	CCGG	2 cut(s)	117, 306
HphI	GGTGA	2 cut(s)	88, 181
Hpy166II	GTNNAC	2 cut(s)	34, 79
Hpy188I	TCNGA	4 cut(s)	109, 220, 285, 397
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	2 cut(s)	34, 79
Hpy99I	CGWCG	2 cut(s)	50, 113
HpyAV	CCTTC	2 cut(s)	175, 193
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	268, 430
HpyF3I	CTNAG	3 cut(s)	235, 330, 414
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	2 cut(s)	145, 309
Kzo9I	GATC	2 cut(s)	3, 128
LguI	GCTCTTC	2 cut(s)	330, 396
LmnI	GCTCC	2 cut(s)	125, 251
LpnPI	CCDG	8 cut(s)	22, 35, 58, 121, 130, 240, 319, 401
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	30
MalI	GATC	2 cut(s)	5, 130
MboI	GATC	2 cut(s)	3, 128
MboII	GAAGA	7 cut(s)	37, 52, 61, 193, 347, 376, 413
MhlI	GDGCHC	2 cut(s)	342, 392
MluCI	AATT	2 cut(s)	296, 348
MlyI	GAGTC	2 cut(s)	107, 173
MmeI	TCCRAC	2 cut(s)	132, 243
MseI	TTAA	1 cut(s)	472
MspI	CCGG	2 cut(s)	117, 306
Mva1269I	GAATGC	2 cut(s)	65, 452
NdeII	GATC	2 cut(s)	3, 128
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	2 cut(s)	121, 304
NspI	RCATGY	1 cut(s)	272
PciSI	GCTCTTC	2 cut(s)	330, 396
PctI	GAATGC	2 cut(s)	65, 452
PleI	GAGTC	2 cut(s)	107, 173
PpsI	GAGTC	2 cut(s)	107, 173
PspN4I	GGNNCC	2 cut(s)	121, 304
PspPI	GGNCC	1 cut(s)	303
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SalI	GTCGAC	1 cut(s)	77
SapI	GCTCTTC	2 cut(s)	330, 396
SaqAI	TTAA	1 cut(s)	472
Sau3AI	GATC	2 cut(s)	3, 128
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	2 cut(s)	107, 173
SduI	GDGCHC	2 cut(s)	342, 392
SetI	ASST	7 cut(s)	24, 33, 54, 90, 259, 408, 420
SfaNI	GCATC	1 cut(s)	156
SinI	GGWCC	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	296, 348
SsiI	CCGC	1 cut(s)	12
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	4 cut(s)	78, 127, 195, 240
TasI	AATT	2 cut(s)	296, 348
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TspDTI	ATGAA	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	303
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.