Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Forward (+)

46838463 .. 46840556

Gene Structure 2094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0350900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2094 bp

ATGATGATGATGATAAGCTCCATCTCGCCCTTACCAGCTCCTCCTACTTCTGTCACGACACATACAAAGCCTATTGGCATCATCCCTCCACCTCCAGAAACAGCAAAAATCATCAACAAAACTGCCAAGCACGTTTCCAAGAATGGACCGAAATTTGAGACGAAGGTCATCACTGAAAAGACTAGACTAAATCCAGATCCAAAATTCGACTTTTTGAATTCCTCACATCCCTACCATGCATATTATCAGCACCGGGTGGCCGCGTTCCTTTCCCAGCCTGATCAGTCTTCTGAAGAGCCAGCTCCAGCTCCAGTTGTAGATGTTAAAGCTGGAACACCAAAGCCTGATTCCCTCTCCCAGCTTAGACCTGAATGCAAAGTGCCCGAACCCGAAGAGTTTACTGTTCAGCTCCCTCAAGGAATTAGTGGAGAAGAACTGGATGTTATGAAGCTCACAGCCCAGTTTGTAGCTCGGAATGGGAAATCGTTTTTGACAGAATTGACAAGTAGAGAGAGTAAAAACCCCCAGTTCTATTTTCTCAATCATAAACATAGCTTGTTCAAGTTTTTTACTTCTCTGGCGGATGCATATTCAAAGGTGTTGATGACAGAAGAAGGGATGACAGAGAAACTGAAGAAGAACGCGGCGGACATGACCATCGTGCTAGAGCGGTGTGTGCATCGGCTGGGGTGGGAGCATTATCAAAAGCAGGCAAAGCAGAAGACTGAAGATGAGATTGAGCAGGAAAGGTTACAAATGGCTGCAATTGATTGGCACGATAATGTCTTGGTCCAAGTCATAGACTTTGATGATGTTGAGGATGACTATTTACCTCCTCCGCTGAGCCTTGAAGAGGTTATAAGTAGGAGCAAAGTCGTTATGGAAGCAGATGATAATGTCGAGGAGCATAGGGATGTTGAAATGGATTTGGATGAAGAAGAGATGCAGCTTGTTGAAGAAGGCATGAAAGTAACGGAGGTGGAACAAGCACCAATGAGAATTGTGAAGAACTGGAAGAGACCCGAGGAGAGGATGATCCAATCCAGTGCCGAAAGAGACATGACGATTTCCCCCATTACCGGGGAGCTTGTCCCTAACAATGAGATGTCTGAGCACATGAGGATTTCCCTCATTGATCCAAGATACAGAGAACAGAAAGAAAGGATGTTTGCTAAGATTCGGGAGACTAGTCTTGTTCTTGCTCAGGACGATGAGATCTCAAGAAACATTGTGAACCTTGCGAGAACCCGGCCTGACATTTTTGGTTCCACAGAGGAGGAAGCTTCCAATGCTGTTAAGGCTGAGTTTGGAAAGCAGGACAAGCAGCAGGTCATATGGGATGGTCATGCTGGAAGCACTGGCCGCGCAGCAAATCAAGCCATGTCACAGAATGCCAATGGAGGTGATAAAACTGATGTTGTGAACAATGAGGTAAGGAACCTTCCTGGTCAGGCGAGACCTTCAGTTCTTCCTCTTCCACCACCTAGTGTTGTTGCCGTTAATCTTCCTAGTGTTCCTGCAAACACAGTTCAGTATGCAGGTACAAATAGCAGTGATTTCCCTGTCCAATTTCCATTGGTTAAGACTACTATGCCTCCGTCAATGTTTATGTCTGCAGCTAGTATACCTGTACCTCCTCCACCTGTATCTGAGTTTACAACCATGCAAATGGCCTACATACCTACAAACACAATGCCGATGCCTCCACCGCCTTTGCCTCATGTGCGGCCACCAACACCTCCGCATGCAGAACCTAAGCCAAAGCGACAGAAGCTTGATGATTCAATGCTTATTCCAGAAGATAAATTTCTGGCACAGCATCCGGGACCGGTCGGTATCAATATATCTGTTTCCATTGTTGACGAAGGTAACCTCAGAGGACAACTTTTGGAGATCACAGTGCAGTCTTTATCAGAAACTGTTGGCAGTCTGAAAGAGAAAATTTCTAGGGAAATCCAGCTTCCGGCAAACAAACAGAAATTGAGTGGAAATACGGGCTTTCTTAAAGACAATTTGTCCCTTGCATATTACAATGTAGGGGCAGGACAAACACTTGCTCTTTCAATAAGAGAGCGTGGTGGAAGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

697

Amino Acids

77.86

Weight (kDa)

5.51

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	36 - 89	2.8e-17	Surp module
Surp	PF01805	146 - 197	6.5e-17	Surp module
PRP21_like_P	PF12230	216 - 415	1.4e-46	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	636 - 692	1.9e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	860
Acc36I	ACCTGC	2 cut(s)	1318, 1529
AccBSI	CCGCTC	1 cut(s)	670
AccI	GTMKAC	1 cut(s)	1624
AccII	CGCG	3 cut(s)	263, 644, 1365
AclWI	GGATC	3 cut(s)	191, 1030, 1130
AcoI	YGGCCR	3 cut(s)	258, 1360, 1727
AcsI	RAATTY	5 cut(s)	152, 203, 217, 1805, 1941
AcuI	CTGAAG	4 cut(s)	312, 653, 747, 1446
AdeI	CACNNNGTG	2 cut(s)	256, 1487
AfaI	GTAC	2 cut(s)	1543, 1632
AfiI	CCNNNNNNNGG	5 cut(s)	853, 1029, 1079, 1080, 1963
AgeI	ACCGGT	1 cut(s)	1828
AgsI	TTSAA	8 cut(s)	217, 562, 594, 851, 920, 956, 1785, 2064
AhdI	GACNNNNNGTC	1 cut(s)	2014
AhlI	ACTAGT	1 cut(s)	1187
AjnI	CCWGG	1 cut(s)	1444
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
Alw21I	GWGCWC	1 cut(s)	1116
Alw26I	GTCTC	5 cut(s)	152, 1012, 1050, 1178, 1450
AlwI	GGATC	3 cut(s)	191, 1030, 1130
AlwNI	CAGNNNCTG	1 cut(s)	1919
Ama87I	CYCGRG	1 cut(s)	1022
AoxI	GGCC	5 cut(s)	258, 1250, 1360, 1671, 1727
ApeKI	GCWGC	5 cut(s)	761, 946, 1324, 1367, 1616
ApoI	RAATTY	5 cut(s)	152, 203, 217, 1805, 1941
AsiGI	ACCGGT	1 cut(s)	1828
AspLEI	GCGC	1 cut(s)	1367
AspS9I	GGNCC	3 cut(s)	146, 790, 1826
AsuC2I	CCSGG	4 cut(s)	254, 1081, 1249, 1824
AsuHPI	GGTGA	1 cut(s)	1415
AvaI	CYCGRG	1 cut(s)	1022
AvaII	GGWCC	3 cut(s)	146, 790, 1826
BaeGI	GKGCMC	1 cut(s)	384
BarI	GAAGNNNNNNTAC	2 cut(s)	1425, 1457
BbsI	GAAGAC	2 cut(s)	279, 728
Bbv12I	GWGCWC	1 cut(s)	1116
BbvI	GCAGC	5 cut(s)	748, 958, 1336, 1379, 1628
BccI	CCATC	3 cut(s)	29, 665, 1334
BceAI	ACGGC	1 cut(s)	1481
BciT130I	CCWGG	1 cut(s)	1446
BclI	TGATCA	1 cut(s)	280
BcnI	CCSGG	4 cut(s)	254, 1081, 1249, 1824
BcoDI	GTCTC	5 cut(s)	152, 1012, 1050, 1178, 1450
BcuI	ACTAGT	1 cut(s)	1187
BfaI	CTAG	7 cut(s)	183, 665, 1188, 1485, 1509, 1620, 1947
BfmI	CTRYAG	1 cut(s)	1614
BfuAI	ACCTGC	2 cut(s)	1318, 1529
BglII	AGATCT	1 cut(s)	1215
BisI	GCNGC	9 cut(s)	261, 645, 762, 947, 1325, 1363, 1368, 1617, 1727
BlpI	GCTNAGC	1 cut(s)	842
BlsI	GCNGC	9 cut(s)	262, 646, 763, 948, 1326, 1364, 1369, 1618, 1728
Bme1390I	CCNGG	5 cut(s)	254, 1081, 1249, 1446, 1824
Bme18I	GGWCC	3 cut(s)	146, 790, 1826
BmeRI	GACNNNNNGTC	1 cut(s)	2014
BmeT110I	CYCGRG	1 cut(s)	1022
BmgT120I	GGNCC	3 cut(s)	146, 790, 1826
BmiI	GGNNCC	3 cut(s)	1267, 1439, 1827
BmrFI	CCNGG	5 cut(s)	254, 1081, 1249, 1446, 1824
BmrI	ACTGGG	2 cut(s)	454, 520
BmsI	GCATC	6 cut(s)	87, 574, 688, 933, 1689, 1828
BmuI	ACTGGG	2 cut(s)	454, 520
BoxI	GACNNNNGTC	1 cut(s)	164
BpiI	GAAGAC	2 cut(s)	279, 728
BpmI	CTGGAG	3 cut(s)	78, 288, 294
Bpu10I	CCTNAGC	2 cut(s)	1203, 1755
Bpu1102I	GCTNAGC	1 cut(s)	842
BpuEI	CTTGAG	2 cut(s)	399, 1204
BpuMI	CCSGG	4 cut(s)	254, 1081, 1249, 1824
BsaI	GGTCTC	2 cut(s)	1012, 1450
BsaJI	CCNNGG	2 cut(s)	1023, 1080
BsaWI	WCCGGW	1 cut(s)	1828
BsaXI	ACNNNNNCTCC	2 cut(s)	1579, 1609
Bsc4I	CCNNNNNNNGG	5 cut(s)	853, 1029, 1079, 1080, 1963
Bse118I	RCCGGY	1 cut(s)	1828
Bse1I	ACTGG	7 cut(s)	311, 441, 460, 526, 1016, 1044, 1363
BseBI	CCWGG	1 cut(s)	1446
BseDI	CCNNGG	2 cut(s)	1023, 1080
BseLI	CCNNNNNNNGG	5 cut(s)	853, 1029, 1079, 1080, 1963
BseMII	CTCAG	6 cut(s)	833, 1101, 1217, 1293, 1641, 1888
BseNI	ACTGG	7 cut(s)	311, 441, 460, 526, 1016, 1044, 1363
BseRI	GAGGAG	6 cut(s)	30, 825, 917, 1040, 1289, 1626
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	5 cut(s)	748, 958, 1336, 1379, 1628
BseYI	CCCAGC	3 cut(s)	273, 357, 685
BsgI	GTGCAG	1 cut(s)	1922
Bsh1236I	CGCG	3 cut(s)	263, 644, 1365
Bsh1285I	CGRYCG	1 cut(s)	1833
BshFI	GGCC	5 cut(s)	260, 1252, 1362, 1673, 1729
BshTI	ACCGGT	1 cut(s)	1828
BsiEI	CGRYCG	1 cut(s)	1833
BsiHKAI	GWGCWC	1 cut(s)	1116
BsiHKCI	CYCGRG	1 cut(s)	1022
BsiSI	CCGG	6 cut(s)	253, 1080, 1249, 1823, 1829, 1964
BslFI	GGGAC	3 cut(s)	1076, 1839, 2002
BslI	CCNNNNNNNGG	5 cut(s)	853, 1029, 1079, 1080, 1963
BsmAI	GTCTC	5 cut(s)	152, 1012, 1050, 1178, 1450
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	3 cut(s)	1076, 1839, 2002
BsmI	GAATGC	2 cut(s)	377, 1396
BsnI	GGCC	5 cut(s)	260, 1252, 1362, 1673, 1729
Bso31I	GGTCTC	2 cut(s)	1012, 1450
BsoBI	CYCGRG	1 cut(s)	1022
Bsp1286I	GDGCHC	2 cut(s)	384, 1116
Bsp143I	GATC	6 cut(s)	196, 280, 1035, 1135, 1215, 1893
Bsp1720I	GCTNAGC	1 cut(s)	842
BspANI	GGCC	5 cut(s)	260, 1252, 1362, 1673, 1729
BspCNI	CTCAG	6 cut(s)	834, 1102, 1216, 1294, 1642, 1887
BspFNI	CGCG	3 cut(s)	263, 644, 1365
BspLI	GGNNCC	3 cut(s)	1267, 1439, 1827
BspMAI	CTGCAG	1 cut(s)	1618
BspMI	ACCTGC	2 cut(s)	1318, 1529
BspPI	GGATC	3 cut(s)	191, 1030, 1130
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	2 cut(s)	1012, 1450
BsrBI	CCGCTC	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	1828
BsrI	ACTGG	7 cut(s)	311, 441, 460, 526, 1016, 1044, 1363
BssAI	RCCGGY	1 cut(s)	1828
BssECI	CCNNGG	2 cut(s)	1023, 1080
BssMI	GATC	6 cut(s)	196, 280, 1035, 1135, 1215, 1893
BssNAI	GTATAC	1 cut(s)	1625
Bst1107I	GTATAC	1 cut(s)	1625
Bst2UI	CCWGG	1 cut(s)	1446
Bst4CI	ACNGT	4 cut(s)	403, 1528, 1900, 1921
Bst6I	CTCTTC	6 cut(s)	288, 387, 846, 933, 1010, 1479
BstC8I	GCNNGC	3 cut(s)	300, 711, 1746
BstDEI	CTNAG	9 cut(s)	362, 842, 1110, 1173, 1203, 1302, 1650, 1755, 1874
BstEII	GGTNACC	1 cut(s)	1868
BstENI	CCTNNNNNAGG	1 cut(s)	851
BstFNI	CGCG	3 cut(s)	263, 644, 1365
BstHHI	GCGC	1 cut(s)	1367
BstKTI	GATC	6 cut(s)	199, 283, 1038, 1138, 1218, 1896
BstMAI	GTCTC	5 cut(s)	152, 1012, 1050, 1178, 1450
BstMBI	GATC	6 cut(s)	196, 280, 1035, 1135, 1215, 1893
BstMCI	CGRYCG	1 cut(s)	1833
BstNI	CCWGG	1 cut(s)	1446
BstNSI	RCATGY	1 cut(s)	1748
BstPAI	GACNNNNGTC	1 cut(s)	164
BstPI	GGTNACC	1 cut(s)	1868
BstSCI	CCNGG	5 cut(s)	252, 1079, 1247, 1444, 1822
BstSFI	CTRYAG	1 cut(s)	1614
BstSLI	GKGCMC	1 cut(s)	384
BstUI	CGCG	3 cut(s)	263, 644, 1365
BstV1I	GCAGC	5 cut(s)	748, 958, 1336, 1379, 1628
BstV2I	GAAGAC	2 cut(s)	279, 728
BstX2I	RGATCY	2 cut(s)	196, 1215
BstXI	CCANNNNNNTGG	1 cut(s)	1669
BstYI	RGATCY	2 cut(s)	196, 1215
BstZ17I	GTATAC	1 cut(s)	1625
BsuRI	GGCC	5 cut(s)	260, 1252, 1362, 1673, 1729
BtsI	GCAGTG	1 cut(s)	1558
BtsIMutI	CAGTG	5 cut(s)	171, 1051, 1356, 1558, 1905
BveI	ACCTGC	2 cut(s)	1318, 1529
Cac8I	GCNNGC	3 cut(s)	300, 711, 1746
CaiI	CAGNNNCTG	1 cut(s)	1919
CfoI	GCGC	1 cut(s)	1367
Cfr10I	RCCGGY	1 cut(s)	1828
Cfr13I	GGNCC	3 cut(s)	146, 790, 1826
Csp6I	GTAC	2 cut(s)	1542, 1631
CspAI	ACCGGT	1 cut(s)	1828
CspCI	CAANNNNNGTGG	2 cut(s)	1695, 1730
CviQI	GTAC	2 cut(s)	1542, 1631
DdeI	CTNAG	9 cut(s)	362, 842, 1110, 1173, 1203, 1302, 1650, 1755, 1874
DpnI	GATC	6 cut(s)	198, 282, 1037, 1137, 1217, 1895
DpnII	GATC	6 cut(s)	196, 280, 1035, 1135, 1215, 1893
DraIII	CACNNNGTG	2 cut(s)	256, 1487
DriI	GACNNNNNGTC	1 cut(s)	2014
EaeI	YGGCCR	3 cut(s)	258, 1360, 1727
Eam1104I	CTCTTC	6 cut(s)	288, 387, 846, 933, 1010, 1479
Eam1105I	GACNNNNNGTC	1 cut(s)	2014
EarI	CTCTTC	6 cut(s)	288, 387, 846, 933, 1010, 1479
EciI	GGCGGA	2 cut(s)	596, 662
Eco31I	GGTCTC	2 cut(s)	1012, 1450
Eco47I	GGWCC	3 cut(s)	146, 790, 1826
Eco57I	CTGAAG	4 cut(s)	312, 653, 747, 1446
Eco88I	CYCGRG	1 cut(s)	1022
Eco91I	GGTNACC	1 cut(s)	1868
EcoNI	CCTNNNNNAGG	1 cut(s)	851
EcoO65I	GGTNACC	1 cut(s)	1868
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	1444
EcoT22I	ATGCAT	2 cut(s)	241, 589
Esp3I	CGTCTC	1 cut(s)	152
FaqI	GGGAC	3 cut(s)	1076, 1839, 2002
FauNDI	CATATG	1 cut(s)	1334
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	1624
Fnu4HI	GCNGC	9 cut(s)	261, 645, 762, 947, 1325, 1363, 1368, 1617, 1727
Fsp4HI	GCNGC	9 cut(s)	261, 645, 762, 947, 1325, 1363, 1368, 1617, 1727
FspBI	CTAG	7 cut(s)	183, 665, 1188, 1485, 1509, 1620, 1947
GlaI	GCGC	1 cut(s)	1366
GluI	GCNGC	9 cut(s)	261, 645, 762, 947, 1325, 1363, 1368, 1617, 1727
GsaI	CCCAGC	3 cut(s)	277, 361, 689
GsuI	CTGGAG	3 cut(s)	78, 288, 294
HaeIII	GGCC	5 cut(s)	260, 1252, 1362, 1673, 1729
HapII	CCGG	6 cut(s)	253, 1080, 1249, 1823, 1829, 1964
HhaI	GCGC	1 cut(s)	1367
Hin6I	GCGC	1 cut(s)	1365
HinP1I	GCGC	1 cut(s)	1365
HincII	GTYRAC	1 cut(s)	1861
HindII	GTYRAC	1 cut(s)	1861
HindIII	AAGCTT	2 cut(s)	1281, 1772
HinfI	GANTC	3 cut(s)	347, 1177, 1781
HpaII	CCGG	6 cut(s)	253, 1080, 1249, 1823, 1829, 1964
HphI	GGTGA	1 cut(s)	1415
Hpy166II	GTNNAC	6 cut(s)	399, 1234, 1423, 1625, 1656, 1861
Hpy188I	TCNGA	7 cut(s)	292, 474, 1111, 1651, 1877, 1915, 1932
Hpy188III	TCNNGA	7 cut(s)	55, 95, 194, 1181, 1205, 1221, 1796
Hpy8I	GTNNAC	6 cut(s)	399, 1234, 1423, 1625, 1656, 1861
HpyAV	CCTTC	6 cut(s)	157, 608, 953, 1451, 1470, 1859
HpyCH4III	ACNGT	4 cut(s)	403, 1528, 1900, 1921
HpyCH4IV	ACGT	1 cut(s)	132
HpyF3I	CTNAG	9 cut(s)	362, 842, 1110, 1173, 1203, 1302, 1650, 1755, 1874
HpySE526I	ACGT	1 cut(s)	132
HspAI	GCGC	1 cut(s)	1365
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	6 cut(s)	196, 280, 1035, 1135, 1215, 1893
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	9 cut(s)	23, 43, 307, 313, 414, 694, 867, 904, 1084
Lsp1109I	GCAGC	5 cut(s)	748, 958, 1336, 1379, 1628
LweI	GCATC	6 cut(s)	87, 574, 688, 933, 1689, 1828
MaeI	CTAG	7 cut(s)	183, 665, 1188, 1485, 1509, 1620, 1947
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	5 cut(s)	52, 750, 970, 1383, 1868
MalI	GATC	6 cut(s)	198, 282, 1037, 1137, 1217, 1895
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	6 cut(s)	196, 280, 1035, 1135, 1215, 1893
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	2 cut(s)	196, 1215
MhlI	GDGCHC	2 cut(s)	384, 1116
Mph1103I	ATGCAT	2 cut(s)	241, 589
MseI	TTAA	5 cut(s)	324, 1296, 1500, 1581, 2004
MslI	CAYNNNNRTG	3 cut(s)	780, 912, 1667
MspA1I	CMGCKG	1 cut(s)	841
MspI	CCGG	6 cut(s)	253, 1080, 1249, 1823, 1829, 1964
MspR9I	CCNGG	5 cut(s)	254, 1081, 1249, 1446, 1824
MunI	CAATTG	1 cut(s)	765
Mva1269I	GAATGC	2 cut(s)	377, 1396
MvaI	CCWGG	1 cut(s)	1446
MvnI	CGCG	3 cut(s)	263, 644, 1365
NciI	CCSGG	4 cut(s)	254, 1081, 1249, 1824
NdeI	CATATG	1 cut(s)	1334
NdeII	GATC	6 cut(s)	196, 280, 1035, 1135, 1215, 1893
NlaIV	GGNNCC	3 cut(s)	1267, 1439, 1827
NmuCI	GTSAC	2 cut(s)	52, 1383
NsiI	ATGCAT	2 cut(s)	241, 589
NspI	RCATGY	1 cut(s)	1748
PaeI	GCATGC	1 cut(s)	1748
PciSI	GCTCTTC	1 cut(s)	288
PctI	GAATGC	2 cut(s)	377, 1396
PfeI	GAWTC	3 cut(s)	347, 1177, 1781
PfoI	TCCNGGA	1 cut(s)	1822
PinAI	ACCGGT	1 cut(s)	1828
PkrI	GCNGC	9 cut(s)	262, 646, 763, 948, 1326, 1364, 1369, 1618, 1728
PshAI	GACNNNNGTC	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	1444
PspEI	GGTNACC	1 cut(s)	1868
PspFI	CCCAGC	3 cut(s)	273, 357, 685
PspGI	CCWGG	1 cut(s)	1444
PspN4I	GGNNCC	3 cut(s)	1267, 1439, 1827
PspPI	GGNCC	3 cut(s)	146, 790, 1826
PstI	CTGCAG	1 cut(s)	1618
PstNI	CAGNNNCTG	1 cut(s)	1919
PsuI	RGATCY	2 cut(s)	196, 1215
RsaI	GTAC	2 cut(s)	1543, 1632
RsaNI	GTAC	2 cut(s)	1542, 1631
RseI	CAYNNNNRTG	3 cut(s)	780, 912, 1667
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	5 cut(s)	324, 1296, 1500, 1581, 2004
SatI	GCNGC	9 cut(s)	261, 645, 762, 947, 1325, 1363, 1368, 1617, 1727
Sau3AI	GATC	6 cut(s)	196, 280, 1035, 1135, 1215, 1893
Sau96I	GGNCC	3 cut(s)	146, 790, 1826
ScrFI	CCNGG	5 cut(s)	254, 1081, 1249, 1446, 1824
SduI	GDGCHC	2 cut(s)	384, 1116
SfaNI	GCATC	6 cut(s)	87, 574, 688, 933, 1689, 1828
SfcI	CTRYAG	1 cut(s)	1614
SinI	GGWCC	3 cut(s)	146, 790, 1826
SmiMI	CAYNNNNRTG	3 cut(s)	780, 912, 1667
SmlI	CTYRAG	2 cut(s)	414, 1219
SmoI	CTYRAG	2 cut(s)	414, 1219
SpeI	ACTAGT	1 cut(s)	1187
SphI	GCATGC	1 cut(s)	1748
SspMI	CTAG	7 cut(s)	183, 665, 1188, 1485, 1509, 1620, 1947
StyD4I	CCNGG	5 cut(s)	252, 1079, 1247, 1444, 1822
TaaI	ACNGT	4 cut(s)	403, 1528, 1900, 1921
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	207, 900
TaqII	GACCGA	1 cut(s)	163
TauI	GCSGC	4 cut(s)	263, 647, 1365, 1729
TfiI	GAWTC	3 cut(s)	347, 1177, 1781
Tru1I	TTAA	5 cut(s)	324, 1296, 1500, 1581, 2004
Tru9I	TTAA	5 cut(s)	324, 1296, 1500, 1581, 2004
TscAI	CASTG	5 cut(s)	178, 1051, 1363, 1558, 1905
TseFI	GTSAC	2 cut(s)	52, 1383
TseI	GCWGC	5 cut(s)	761, 946, 1324, 1367, 1616
Tsp45I	GTSAC	2 cut(s)	52, 1383
TspDTI	ATGAA	3 cut(s)	461, 948, 980
TspGWI	ACGGA	2 cut(s)	989, 1587
TspRI	CASTG	5 cut(s)	178, 1051, 1363, 1558, 1905
VpaK11BI	GGWCC	3 cut(s)	146, 790, 1826
XagI	CCTNNNNNAGG	1 cut(s)	851
XapI	RAATTY	5 cut(s)	152, 203, 217, 1805, 1941
XceI	RCATGY	1 cut(s)	1748
XmiI	GTMKAC	1 cut(s)	1624
XspI	CTAG	7 cut(s)	183, 665, 1188, 1485, 1509, 1620, 1947
Zsp2I	ATGCAT	2 cut(s)	241, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.