Rroxscaffold_4G00287620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001015
Physical Location & Seq
Reverse (-)
8618087 .. 8618706
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00287620.1

Sequence Viewer

Length: 492 bp
ATGGAGTGGAGGACGAAGATGGCAATGGATATCAGGAGGAGGGTACCACATGGAGGCTACAACACTAGAAGTACAACTCCTTATTGGATGAGAGACCTTCAGAACAAAAGAGCACAACCAGAAGAAGACTTTGATCTCGGTTTGTCTTTCACCATTCACGGCGGCGATGGAATCGACCCCCGACGATTCGACAGACATGTGTGGCCTGGCTTTATTTATGTGGAAGTTATGAGGAGGAGAGACAAGTGGGCAGCCGGAACTTCCAGTGGCATAGCGACGGTGATTGAGAAAGGGAGGGAGAAAGTGGTGGCGCCGGAAACTCCCGGCGCCAGGGTGTACGGCATAGAGTCAGTGAGCCGGGCCAAGATCCCTCTCCCCAAGCCTGGTAAGAAAAGGTCAGGAAGGTTTGGGCTCGTGAAGAATGATGGGCCTGGGTTGATTGGACAAGGACATATTTCTGTCACTGTGGAACTTGTTAAATTACCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

163

Amino Acids

18.34

Weight (kDa)

10.26

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 3 cut(s) 43, 310, 326
AciI CCGC 1 cut(s) 162
AclWI GGATC 1 cut(s) 361
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 2 cut(s) 311, 327
AfaI GTAC 3 cut(s) 45, 73, 338
AfiI CCNNNNNNNGG 3 cut(s) 53, 330, 383
AflIII ACRYGT 1 cut(s) 196
AjnI CCWGG 4 cut(s) 205, 329, 382, 430
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 87, 234
AlwI GGATC 1 cut(s) 361
AoxI GGCC 3 cut(s) 203, 360, 428
ApeKI GCWGC 1 cut(s) 251
Asp718I GGTACC 1 cut(s) 43
AspLEI GCGC 2 cut(s) 313, 329
AspS9I GGNCC 2 cut(s) 360, 428
AsuC2I CCSGG 2 cut(s) 324, 359
AsuHPI GGTGA 2 cut(s) 142, 292
BanI GGYRCC 3 cut(s) 43, 310, 326
BanII GRGCYC 1 cut(s) 414
BauI CACGAG 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 263
BccI CCATC 3 cut(s) 13, 161, 419
BceAI ACGGC 2 cut(s) 175, 355
BciT130I CCWGG 4 cut(s) 207, 331, 384, 432
BcnI CCSGG 2 cut(s) 324, 359
BcoDI GTCTC 2 cut(s) 87, 234
BfaI CTAG 1 cut(s) 66
BfoI RGCGCY 2 cut(s) 314, 330
BisI GCNGC 2 cut(s) 163, 252
BlsI GCNGC 2 cut(s) 164, 253
Bme1390I CCNGG 6 cut(s) 207, 324, 331, 359, 384, 432
BmgT120I GGNCC 2 cut(s) 360, 428
BmiI GGNNCC 3 cut(s) 45, 312, 328
BmrFI CCNGG 6 cut(s) 207, 324, 331, 359, 384, 432
BpiI GAAGAC 1 cut(s) 132
BpuMI CCSGG 2 cut(s) 324, 359
BsaHI GRCGYC 2 cut(s) 311, 327
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 330, 431
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 330, 383
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 30
BseBI CCWGG 4 cut(s) 207, 331, 384, 432
BseDI CCNNGG 2 cut(s) 330, 431
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 3 cut(s) 53, 330, 383
BseMI GCAATG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 3 cut(s) 52, 247, 250
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 3 cut(s) 205, 362, 430
BshNI GGYRCC 3 cut(s) 43, 310, 326
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 4 cut(s) 255, 314, 324, 358
BslI CCNNNNNNNGG 3 cut(s) 53, 330, 383
BsmAI GTCTC 2 cut(s) 87, 234
BsnI GGCC 3 cut(s) 205, 362, 430
Bso31I GGTCTC 1 cut(s) 87
Bsp1286I GDGCHC 2 cut(s) 115, 414
Bsp143I GATC 2 cut(s) 133, 366
BspACI CCGC 1 cut(s) 162
BspANI GGCC 3 cut(s) 205, 362, 430
BspLI GGNNCC 3 cut(s) 45, 312, 328
BspPI GGATC 1 cut(s) 361
BspT107I GGYRCC 3 cut(s) 43, 310, 326
BspTNI GGTCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 330, 431
BssMI GATC 2 cut(s) 133, 366
BssNI GRCGYC 2 cut(s) 311, 327
BssSI CACGAG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 413
Bst2UI CCWGG 4 cut(s) 207, 331, 384, 432
Bst4CI ACNGT 2 cut(s) 280, 466
BstACI GRCGYC 2 cut(s) 311, 327
BstF5I GGATG 1 cut(s) 93
BstH2I RGCGCY 2 cut(s) 314, 330
BstHHI GCGC 2 cut(s) 313, 329
BstKTI GATC 2 cut(s) 136, 369
BstMAI GTCTC 2 cut(s) 87, 234
BstMBI GATC 2 cut(s) 133, 366
BstNI CCWGG 4 cut(s) 207, 331, 384, 432
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 6 cut(s) 205, 322, 329, 357, 382, 430
BstV1I GCAGC 1 cut(s) 263
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuRI GGCC 3 cut(s) 205, 362, 430
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 3 cut(s) 271, 357, 462
CfoI GCGC 2 cut(s) 313, 329
Cfr13I GGNCC 2 cut(s) 360, 428
Csp6I GTAC 3 cut(s) 44, 72, 337
CviAII CATG 2 cut(s) 50, 197
CviJI RGCY 9 cut(s) 57, 205, 210, 254, 357, 362, 382, 412, 430
CviKI_1 RGCY 9 cut(s) 57, 205, 210, 254, 357, 362, 382, 412, 430
CviQI GTAC 3 cut(s) 44, 72, 337
DinI GGCGCC 2 cut(s) 312, 328
DpnI GATC 2 cut(s) 135, 368
DpnII GATC 2 cut(s) 133, 366
Eco24I GRGCYC 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 87
Eco32I GATATC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 83
EcoRII CCWGG 4 cut(s) 205, 329, 382, 430
EcoRV GATATC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 414
EgeI GGCGCC 2 cut(s) 312, 328
EheI GGCGCC 2 cut(s) 312, 328
FaeI CATG 2 cut(s) 53, 200
FaiI YATR 7 cut(s) 51, 198, 219, 230, 272, 344, 453
FatI CATG 2 cut(s) 49, 196
Fnu4HI GCNGC 2 cut(s) 163, 252
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 2 cut(s) 163, 252
FspBI CTAG 1 cut(s) 66
GlaI GCGC 2 cut(s) 312, 328
GluI GCNGC 2 cut(s) 163, 252
HaeII RGCGCY 2 cut(s) 314, 330
HaeIII GGCC 3 cut(s) 205, 362, 430
HapII CCGG 4 cut(s) 255, 314, 324, 358
HhaI GCGC 2 cut(s) 313, 329
Hin1I GRCGYC 2 cut(s) 311, 327
Hin1II CATG 2 cut(s) 53, 200
Hin6I GCGC 2 cut(s) 311, 327
HinP1I GCGC 2 cut(s) 311, 327
HinfI GANTC 3 cut(s) 171, 186, 347
HpaII CCGG 4 cut(s) 255, 314, 324, 358
HphI GGTGA 2 cut(s) 142, 292
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 3 cut(s) 34, 399, 415
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 2 cut(s) 186, 280
HpyAV CCTTC 2 cut(s) 107, 396
HpyCH4III ACNGT 2 cut(s) 280, 466
Hsp92I GRCGYC 2 cut(s) 311, 327
Hsp92II CATG 2 cut(s) 53, 200
HspAI GCGC 2 cut(s) 311, 327
KasI GGCGCC 2 cut(s) 310, 326
KpnI GGTACC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 133, 366
Lsp1109I GCAGC 1 cut(s) 263
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 460
MalI GATC 2 cut(s) 135, 368
MboI GATC 2 cut(s) 133, 366
MboII GAAGA 4 cut(s) 28, 134, 137, 430
MflI RGATCY 1 cut(s) 366
MhlI GDGCHC 2 cut(s) 115, 414
MluCI AATT 1 cut(s) 479
Mly113I GGCGCC 2 cut(s) 311, 327
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 8 cut(s) 3, 30, 33, 47, 225, 228, 288, 381
MseI TTAA 1 cut(s) 477
MspI CCGG 4 cut(s) 255, 314, 324, 358
MspR9I CCNGG 6 cut(s) 207, 324, 331, 359, 384, 432
MvaI CCWGG 4 cut(s) 207, 331, 384, 432
NarI GGCGCC 2 cut(s) 311, 327
NciI CCSGG 2 cut(s) 324, 359
NdeII GATC 2 cut(s) 133, 366
NlaIII CATG 2 cut(s) 53, 200
NlaIV GGNNCC 3 cut(s) 45, 312, 328
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 1 cut(s) 200
PciI ACATGT 1 cut(s) 196
PfeI GAWTC 2 cut(s) 171, 186
PkrI GCNGC 2 cut(s) 164, 253
PleI GAGTC 1 cut(s) 355
PluTI GGCGCC 2 cut(s) 314, 330
PpsI GAGTC 1 cut(s) 355
PscI ACATGT 1 cut(s) 196
Psp6I CCWGG 4 cut(s) 205, 329, 382, 430
PspGI CCWGG 4 cut(s) 205, 329, 382, 430
PspN4I GGNNCC 3 cut(s) 45, 312, 328
PspPI GGNCC 2 cut(s) 360, 428
PsuI RGATCY 1 cut(s) 366
RsaI GTAC 3 cut(s) 45, 73, 338
RsaNI GTAC 3 cut(s) 44, 72, 337
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 2 cut(s) 163, 252
Sau3AI GATC 2 cut(s) 133, 366
Sau96I GGNCC 2 cut(s) 360, 428
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 6 cut(s) 207, 324, 331, 359, 384, 432
SduI GDGCHC 2 cut(s) 115, 414
SetI ASST 3 cut(s) 99, 398, 407
SfoI GGCGCC 2 cut(s) 312, 328
Sse9I AATT 1 cut(s) 479
SsiI CCGC 1 cut(s) 162
SspDI GGCGCC 2 cut(s) 310, 326
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 6 cut(s) 205, 322, 329, 357, 382, 430
TaaI ACNGT 2 cut(s) 280, 466
TaqI TCGA 2 cut(s) 174, 189
TasI AATT 1 cut(s) 479
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 2 cut(s) 171, 186
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 3 cut(s) 271, 357, 469
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 460
TspRI CASTG 3 cut(s) 271, 357, 469
XceI RCATGY 1 cut(s) 200
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.