Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Reverse (-)

6502260 .. 6502859

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATTATGGATTTTATGAGGAATCCTGGACGTTACAACACTAGACGTAGCACAATTCCTTTTTGGATGAAAGACCGGAAGAACAAAAGAGGAGAAGAAGAAGACTTTGATCTCGACTTGTCCTTCATCATCCACCACGGCGAAGGAATCGACCCTCCGAGTGAAAGCATCTCAGAGCGGACGTACTTCTTGGTGTGGTGGCTCGTACCCGGGATAGATAACTGGGCTCCTTTTCCGGTGGAGGGGAAGCCTTTTGATCCTGCATGGAATAGAATTTGGACTCAACGAGTGGATAAACATGTGTGGCCTTACTTTATATATGTGGAAGTTATGAGGAGGCGAGACAAGTCGGCAGCGGGGACTTCCGGTGGCATAGCGACGGTGGTGGAGAATGGAATAGAGGAAGTTGTGGAGCCGGGAACTCCCGGTGCGACTGTGTACGGCATAGAGTCAGTGAGCCGGTGCAAGATCCCTCTGCCGAGGCCTGGTGAGAAAACTTCAGGGAGGTATGAGCTTGTGAAGGGTGACGGGACTGGGATGGCTGTACAAGGACGTGTTTTTGTCACGGTGCAACTAAAGAAAATAATCAAGGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

200

Amino Acids

22.7

Weight (kDa)

8.62

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	178
AciI	CCGC	2 cut(s)	178, 356
AclWI	GGATC	2 cut(s)	251, 463
AcsI	RAATTY	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	4 cut(s)	185, 207, 440, 546
AfiI	CCNNNNNNNGG	2 cut(s)	242, 485
AflIII	ACRYGT	2 cut(s)	298, 553
AjiI	CACGTC	1 cut(s)	554
AjnI	CCWGG	2 cut(s)	25, 484
AluBI	AGCT	2 cut(s)	514, 596
AluI	AGCT	2 cut(s)	514, 596
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	2 cut(s)	251, 463
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	305, 482
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	273
AsuC2I	CCSGG	4 cut(s)	210, 211, 417, 426
AsuHPI	GGTGA	2 cut(s)	500, 536
AvaI	CYCGRG	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	532
BceAI	ACGGC	2 cut(s)	154, 457
BciT130I	CCWGG	2 cut(s)	27, 486
BcnI	CCSGG	4 cut(s)	210, 211, 417, 426
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	6 cut(s)	27, 210, 211, 417, 426, 486
BmeT110I	CYCGRG	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	228, 414
BmrFI	CCNGG	6 cut(s)	27, 210, 211, 417, 426, 486
BmrI	ACTGGG	2 cut(s)	232, 543
BmsI	GCATC	1 cut(s)	177
BmuI	ACTGGG	2 cut(s)	232, 543
BpiI	GAAGAC	1 cut(s)	108
BpuMI	CCSGG	4 cut(s)	210, 211, 417, 426
BsaJI	CCNNGG	3 cut(s)	136, 209, 479
BsaWI	WCCGGW	3 cut(s)	75, 235, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 485
Bse118I	RCCGGY	1 cut(s)	459
Bse1I	ACTGG	2 cut(s)	227, 538
BseBI	CCWGG	2 cut(s)	27, 486
BseDI	CCNNGG	3 cut(s)	136, 209, 479
BseGI	GGATG	3 cut(s)	72, 129, 543
BseLI	CCNNNNNNNGG	2 cut(s)	242, 485
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	227, 538
BseRI	GAGGAG	2 cut(s)	105, 349
BseXI	GCAGC	1 cut(s)	365
BshFI	GGCC	2 cut(s)	307, 484
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	7 cut(s)	76, 210, 236, 366, 416, 426, 460
BslFI	GGGAC	2 cut(s)	373, 544
BslI	CCNNNNNNNGG	2 cut(s)	242, 485
BsmAI	GTCTC	1 cut(s)	336
BsmFI	GGGAC	2 cut(s)	373, 544
BsnI	GGCC	2 cut(s)	307, 484
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	3 cut(s)	109, 256, 468
BspACI	CCGC	2 cut(s)	178, 356
BspANI	GGCC	2 cut(s)	307, 484
BspCNI	CTCAG	1 cut(s)	185
BspLI	GGNNCC	2 cut(s)	228, 414
BspPI	GGATC	2 cut(s)	251, 463
BsrBI	CCGCTC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	2 cut(s)	227, 538
BssAI	RCCGGY	1 cut(s)	459
BssECI	CCNNGG	3 cut(s)	136, 209, 479
BssMI	GATC	3 cut(s)	109, 256, 468
Bst2UI	CCWGG	2 cut(s)	27, 486
Bst4CI	ACNGT	3 cut(s)	382, 436, 568
BstAUI	TGTACA	1 cut(s)	544
BstDEI	CTNAG	1 cut(s)	172
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	3 cut(s)	72, 129, 543
BstKTI	GATC	3 cut(s)	112, 259, 471
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	3 cut(s)	109, 256, 468
BstNI	CCWGG	2 cut(s)	27, 486
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	6 cut(s)	25, 208, 209, 415, 424, 484
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	307, 484
BtgI	CCRYGG	1 cut(s)	136
BtrI	CACGTC	1 cut(s)	554
BtsCI	GGATG	3 cut(s)	72, 129, 543
BtsIMutI	CAGTG	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	459
Cfr9I	CCCGGG	1 cut(s)	209
Csp6I	GTAC	4 cut(s)	184, 206, 439, 545
CviAII	CATG	2 cut(s)	264, 299
CviQI	GTAC	4 cut(s)	184, 206, 439, 545
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	3 cut(s)	111, 258, 470
DpnII	GATC	3 cut(s)	109, 256, 468
Eco147I	AGGCCT	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	25, 484
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	2 cut(s)	267, 302
FaqI	GGGAC	2 cut(s)	373, 544
FatI	CATG	2 cut(s)	263, 298
FauI	CCCGC	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	3 cut(s)	79, 116, 550
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	307, 484
HapII	CCGG	7 cut(s)	76, 210, 236, 366, 416, 426, 460
Hin1II	CATG	2 cut(s)	267, 302
HinfI	GANTC	4 cut(s)	22, 147, 280, 449
HpaII	CCGG	7 cut(s)	76, 210, 236, 366, 416, 426, 460
HphI	GGTGA	2 cut(s)	500, 536
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	159, 175
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	3 cut(s)	133, 137, 514
HpyCH4III	ACNGT	3 cut(s)	382, 436, 568
HpyCH4IV	ACGT	4 cut(s)	31, 46, 182, 553
HpyCH4V	TGCA	3 cut(s)	263, 465, 571
HpyF3I	CTNAG	1 cut(s)	172
HpySE526I	ACGT	4 cut(s)	31, 46, 182, 553
Hsp92II	CATG	2 cut(s)	267, 302
Kzo9I	GATC	3 cut(s)	109, 256, 468
LmnI	GCTCC	2 cut(s)	232, 412
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	4 cut(s)	31, 46, 182, 553
MaeIII	GTNAC	3 cut(s)	32, 524, 562
MalI	GATC	3 cut(s)	111, 258, 470
MbiI	CCGCTC	1 cut(s)	178
MboI	GATC	3 cut(s)	109, 256, 468
MboII	GAAGA	4 cut(s)	91, 107, 110, 113
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	2 cut(s)	54, 273
MlyI	GAGTC	2 cut(s)	274, 458
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	7 cut(s)	76, 210, 236, 366, 416, 426, 460
MspR9I	CCNGG	6 cut(s)	27, 210, 211, 417, 426, 486
MvaI	CCWGG	2 cut(s)	27, 486
NciI	CCSGG	4 cut(s)	210, 211, 417, 426
NdeII	GATC	3 cut(s)	109, 256, 468
NlaIII	CATG	2 cut(s)	267, 302
NlaIV	GGNNCC	2 cut(s)	228, 414
NmeAIII	GCCGAG	1 cut(s)	504
NmuCI	GTSAC	2 cut(s)	524, 562
NspI	RCATGY	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	484
PciI	ACATGT	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	22, 147
PfoI	TCCNGGA	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	2 cut(s)	274, 457
PpsI	GAGTC	2 cut(s)	274, 457
PscI	ACATGT	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	25, 484
PspGI	CCWGG	2 cut(s)	25, 484
PspN4I	GGNNCC	2 cut(s)	228, 414
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	4 cut(s)	185, 207, 440, 546
RsaNI	GTAC	4 cut(s)	184, 206, 439, 545
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	109, 256, 468
SchI	GAGTC	2 cut(s)	274, 458
ScrFI	CCNGG	6 cut(s)	27, 210, 211, 417, 426, 486
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	8 cut(s)	34, 49, 185, 509, 516, 556, 594, 598
SfaNI	GCATC	1 cut(s)	177
SmaI	CCCGGG	1 cut(s)	211
Sse9I	AATT	2 cut(s)	54, 273
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	2 cut(s)	178, 356
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	6 cut(s)	25, 208, 209, 415, 424, 484
TaaI	ACNGT	3 cut(s)	382, 436, 568
TaiI	ACGT	4 cut(s)	34, 49, 185, 556
TaqI	TCGA	2 cut(s)	114, 150
TasI	AATT	2 cut(s)	54, 273
TatI	WGTACW	1 cut(s)	544
TfiI	GAWTC	2 cut(s)	22, 147
TscAI	CASTG	1 cut(s)	459
TseFI	GTSAC	2 cut(s)	524, 562
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	524, 562
TspDTI	ATGAA	2 cut(s)	83, 115
TspMI	CCCGGG	1 cut(s)	209
TspRI	CASTG	1 cut(s)	459
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	1 cut(s)	302
XmaI	CCCGGG	1 cut(s)	209
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.