RLG00000027126

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001015
Physical Location & Seq
Reverse (-)
8799340 .. 8802711
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027126

Sequence Viewer

Length: 891 bp
ATGAACACAAATCATGACAGACGCCATTGCTCTGCTAACTTGAAATTGAACAGGAACACCAGCCGTTATTACCGCAGATCACCGGCCCACAAGAAGATCAAACAGATTTCTGAAGTCTCTGCACTCTGCCCCGTTCTGAACGGCGCTACGTACCAAGTCGTGTGGCGGATTGACCCCGGCGGCAGAGAGCACGCGACTAGTAAGGCTGAAGGCGAACCAGACCCTGAATGGAACGAAAAGTACATCATCGGCTTAAACTGCAACCCTGTGAATGAGGACCTCTTTGTGAACGTGGAGGTCTTAAGGTATAGCAGCGTGGAAAACCGTCGTGACCCCGGAACCTCCGACGGCATAGGGGAAGTGTTTAAGGGAAGGATTCCGTTTCCGAAGAGTCTCAATAAGGGAGAATATTGGGCTGAAGAGTCTATTGTTGGGCGACCAAATCTTACATGGGGCAGGATTTGGAAGGTTCGATTAGGGCAGCACGTGTGGCCAGGTTTTGTTCATGTTGAAATTATTCGTAGACGAGATGACAAGGAGCCGGAAACTTCCGGCGGCATAAAGACACCGGAAAATTCCGGCGCCATAGCATCAGTGAACCGGGTCAGAATCCCTCTACTGATGCCCAATGAGAGGAAAGAAGGGCGATTTGGGCTTGTGAAAAGCGATGGGCCTGGGTTGATGGAGGAAGGCTATATATATGTTAGGATGCAAATGATTAGATATTGGAGGCTTCACTCAACTCCGGCGTGCAATTGTGCTCGAAAGCGACAATATCGGAGTAAGATGGTGAAAGATGCCGGTAATAGAGCACCAGAATTTGAATTCCACGGAGCGTCGAGCAACTACTTCCGTAATAGAGCATCGGAATTTAATCTCGGATTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

297

Amino Acids

33.97

Weight (kDa)

9.66

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 581
AccI GTMKAC 1 cut(s) 523
AccII CGCG 1 cut(s) 194
AciI CCGC 4 cut(s) 73, 166, 180, 555
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 4 cut(s) 574, 818, 824, 869
AcuI CTGAAG 3 cut(s) 132, 228, 438
AcvI CACGTG 1 cut(s) 487
AcyI GRCGYC 2 cut(s) 22, 582
AfaI GTAC 2 cut(s) 152, 242
AfiI CCNNNNNNNGG 1 cut(s) 633
AflII CTTAAG 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 4 cut(s) 43, 49, 512, 824
AhlI ACTAGT 1 cut(s) 197
AjnI CCWGG 2 cut(s) 493, 673
AjuI GAANNNNNNNTTGG 2 cut(s) 633, 665
Alw21I GWGCWC 3 cut(s) 192, 763, 814
Alw26I GTCTC 2 cut(s) 121, 398
AlwNI CAGNNNCTG 1 cut(s) 224
AoxI GGCC 3 cut(s) 84, 491, 671
ApeKI GCWGC 2 cut(s) 312, 481
ApoI RAATTY 4 cut(s) 574, 818, 824, 869
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 2 cut(s) 146, 584
AspS9I GGNCC 3 cut(s) 85, 277, 671
AsuC2I CCSGG 3 cut(s) 177, 336, 602
AsuHPI GGTGA 2 cut(s) 72, 802
AvaII GGWCC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 493
BanI GGYRCC 1 cut(s) 581
BbrPI CACGTG 1 cut(s) 487
Bbv12I GWGCWC 3 cut(s) 192, 763, 814
BbvI GCAGC 2 cut(s) 324, 493
BccI CCATC 3 cut(s) 662, 676, 781
BceAI ACGGC 3 cut(s) 48, 157, 364
BciT130I CCWGG 2 cut(s) 495, 675
BcnI CCSGG 3 cut(s) 177, 336, 602
BcoDI GTCTC 2 cut(s) 121, 398
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 1 cut(s) 198
BfoI RGCGCY 2 cut(s) 147, 585
BfrI CTTAAG 1 cut(s) 301
BisI GCNGC 4 cut(s) 181, 313, 482, 556
BlsI GCNGC 4 cut(s) 182, 314, 483, 557
Bme1390I CCNGG 5 cut(s) 177, 336, 495, 602, 675
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 85, 277, 671
BmiI GGNNCC 3 cut(s) 340, 540, 583
BmrFI CCNGG 5 cut(s) 177, 336, 495, 602, 675
BmsI GCATC 5 cut(s) 599, 612, 699, 787, 872
BpuMI CCSGG 3 cut(s) 177, 336, 602
BsaAI YACGTR 2 cut(s) 150, 487
BsaHI GRCGYC 2 cut(s) 22, 582
BsaJI CCNNGG 4 cut(s) 175, 334, 674, 829
BsaWI WCCGGW 1 cut(s) 568
Bsc4I CCNNNNNNNGG 1 cut(s) 633
Bse118I RCCGGY 2 cut(s) 82, 800
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 2 cut(s) 495, 675
BseDI CCNNGG 4 cut(s) 175, 334, 674, 829
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 1 cut(s) 633
BseMI GCAATG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 324, 493
BsgI GTGCAG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 3 cut(s) 86, 493, 673
BshNI GGYRCC 1 cut(s) 581
BsiHKAI GWGCWC 3 cut(s) 192, 763, 814
BslI CCNNNNNNNGG 1 cut(s) 633
BsmAI GTCTC 2 cut(s) 121, 398
BsnI GGCC 3 cut(s) 86, 493, 673
Bsp1286I GDGCHC 3 cut(s) 192, 763, 814
Bsp143I GATC 2 cut(s) 77, 96
BspACI CCGC 4 cut(s) 73, 166, 180, 555
BspANI GGCC 3 cut(s) 86, 493, 673
BspFNI CGCG 1 cut(s) 194
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 3 cut(s) 340, 540, 583
BspT107I GGYRCC 1 cut(s) 581
BspTI CTTAAG 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 2 cut(s) 82, 800
BssAI RCCGGY 2 cut(s) 82, 800
BssECI CCNNGG 4 cut(s) 175, 334, 674, 829
BssMI GATC 2 cut(s) 77, 96
BssNI GRCGYC 2 cut(s) 22, 582
Bst2UI CCWGG 2 cut(s) 495, 675
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 2 cut(s) 383, 414
BstACI GRCGYC 2 cut(s) 22, 582
BstAFI CTTAAG 1 cut(s) 301
BstBAI YACGTR 2 cut(s) 150, 487
BstC8I GCNNGC 2 cut(s) 192, 751
BstDSI CCRYGG 1 cut(s) 829
BstF5I GGATG 1 cut(s) 714
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 2 cut(s) 147, 585
BstHHI GCGC 2 cut(s) 146, 584
BstKTI GATC 2 cut(s) 80, 99
BstMAI GTCTC 2 cut(s) 121, 398
BstMBI GATC 2 cut(s) 77, 96
BstMWI GCNNNNNNNGC 3 cut(s) 258, 490, 652
BstNI CCWGG 2 cut(s) 495, 675
BstSCI CCNGG 5 cut(s) 175, 334, 493, 600, 673
BstSNI TACGTA 1 cut(s) 150
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 324, 493
BsuRI GGCC 3 cut(s) 86, 493, 673
BtgI CCRYGG 1 cut(s) 829
BtgZI GCGATG 1 cut(s) 681
BtsCI GGATG 1 cut(s) 714
BtsIMutI CAGTG 1 cut(s) 600
Cac8I GCNNGC 2 cut(s) 192, 751
CaiI CAGNNNCTG 1 cut(s) 224
CciI TCATGA 1 cut(s) 13
CfoI GCGC 2 cut(s) 146, 584
Cfr10I RCCGGY 2 cut(s) 82, 800
Cfr13I GGNCC 3 cut(s) 85, 277, 671
CseI GACGC 2 cut(s) 30, 825
Csp6I GTAC 2 cut(s) 151, 241
CspCI CAANNNNNGTGG 2 cut(s) 143, 178
CviAII CATG 3 cut(s) 14, 450, 506
CviQI GTAC 2 cut(s) 151, 241
DinI GGCGCC 1 cut(s) 583
DpnI GATC 2 cut(s) 79, 98
DpnII GATC 2 cut(s) 77, 96
EaeI YGGCCR 1 cut(s) 491
Eam1104I CTCTTC 2 cut(s) 383, 414
EarI CTCTTC 2 cut(s) 383, 414
EciI GGCGGA 1 cut(s) 181
Eco105I TACGTA 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 3 cut(s) 132, 228, 438
Eco72I CACGTG 1 cut(s) 487
EcoO109I RGGNCCY 1 cut(s) 277
EcoRI GAATTC 1 cut(s) 824
EcoRII CCWGG 2 cut(s) 493, 673
EgeI GGCGCC 1 cut(s) 583
EheI GGCGCC 1 cut(s) 583
FaeI CATG 3 cut(s) 17, 453, 509
FatI CATG 3 cut(s) 13, 449, 505
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 4 cut(s) 181, 313, 482, 556
FokI GGATG 1 cut(s) 721
Fsp4HI GCNGC 4 cut(s) 181, 313, 482, 556
FspBI CTAG 1 cut(s) 198
GlaI GCGC 2 cut(s) 145, 583
GluI GCNGC 4 cut(s) 181, 313, 482, 556
HaeII RGCGCY 2 cut(s) 147, 585
HaeIII GGCC 3 cut(s) 86, 493, 673
HgaI GACGC 2 cut(s) 30, 825
HhaI GCGC 2 cut(s) 146, 584
Hin1I GRCGYC 2 cut(s) 22, 582
Hin1II CATG 3 cut(s) 17, 453, 509
Hin6I GCGC 2 cut(s) 144, 582
HinP1I GCGC 2 cut(s) 144, 582
HinfI GANTC 4 cut(s) 376, 391, 422, 609
HphI GGTGA 2 cut(s) 72, 802
Hpy166II GTNNAC 3 cut(s) 289, 524, 598
Hpy188I TCNGA 8 cut(s) 112, 138, 346, 387, 608, 780, 868, 881
Hpy188III TCNNGA 2 cut(s) 14, 329
Hpy8I GTNNAC 3 cut(s) 289, 524, 598
Hpy99I CGWCG 3 cut(s) 330, 350, 841
HpyAV CCTTC 5 cut(s) 203, 366, 460, 635, 683
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 3 cut(s) 149, 291, 486
HpyCH4V TGCA 4 cut(s) 122, 261, 712, 753
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 490, 652
HpySE526I ACGT 3 cut(s) 149, 291, 486
Hsp92I GRCGYC 2 cut(s) 22, 582
Hsp92II CATG 3 cut(s) 17, 453, 509
HspAI GCGC 2 cut(s) 144, 582
KasI GGCGCC 1 cut(s) 581
Kzo9I GATC 2 cut(s) 77, 96
LmnI GCTCC 2 cut(s) 538, 833
Lsp1109I GCAGC 2 cut(s) 324, 493
LweI GCATC 5 cut(s) 599, 612, 699, 787, 872
MaeI CTAG 1 cut(s) 198
MaeII ACGT 3 cut(s) 149, 291, 486
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 79, 98
MboI GATC 2 cut(s) 77, 96
MboII GAAGA 3 cut(s) 106, 400, 431
MfeI CAATTG 1 cut(s) 754
MhlI GDGCHC 3 cut(s) 192, 763, 814
MlsI TGGCCA 1 cut(s) 493
MluCI AATT 7 cut(s) 44, 513, 574, 754, 818, 824, 869
MluNI TGGCCA 1 cut(s) 493
Mly113I GGCGCC 1 cut(s) 582
MlyI GAGTC 2 cut(s) 400, 431
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 8 cut(s) 268, 289, 290, 352, 624, 627, 679, 723
Mox20I TGGCCA 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 516
MscI TGGCCA 1 cut(s) 493
MseI TTAA 4 cut(s) 254, 302, 366, 873
Msp20I TGGCCA 1 cut(s) 493
MspCI CTTAAG 1 cut(s) 301
MspR9I CCNGG 5 cut(s) 177, 336, 495, 602, 675
MunI CAATTG 1 cut(s) 754
MvaI CCWGG 2 cut(s) 495, 675
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 258, 490, 652
NarI GGCGCC 1 cut(s) 582
NciI CCSGG 3 cut(s) 177, 336, 602
NdeII GATC 2 cut(s) 77, 96
NlaIII CATG 3 cut(s) 17, 453, 509
NlaIV GGNNCC 3 cut(s) 340, 540, 583
NmuCI GTSAC 1 cut(s) 329
PagI TCATGA 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 376, 609
PkrI GCNGC 4 cut(s) 182, 314, 483, 557
PleI GAGTC 2 cut(s) 399, 430
PluTI GGCGCC 1 cut(s) 585
PmaCI CACGTG 1 cut(s) 487
PmlI CACGTG 1 cut(s) 487
PpsI GAGTC 2 cut(s) 399, 430
Ppu21I YACGTR 2 cut(s) 150, 487
PpuMI RGGWCCY 1 cut(s) 277
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 493, 673
PspCI CACGTG 1 cut(s) 487
PspGI CCWGG 2 cut(s) 493, 673
PspN4I GGNNCC 3 cut(s) 340, 540, 583
PspPI GGNCC 3 cut(s) 85, 277, 671
PspPPI RGGWCCY 1 cut(s) 277
PsrI GAACNNNNNNTAC 2 cut(s) 224, 256
PstNI CAGNNNCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 152, 242
RsaNI GTAC 2 cut(s) 151, 241
SaqAI TTAA 4 cut(s) 254, 302, 366, 873
SatI GCNGC 4 cut(s) 181, 313, 482, 556
Sau3AI GATC 2 cut(s) 77, 96
Sau96I GGNCC 3 cut(s) 85, 277, 671
SchI GAGTC 2 cut(s) 400, 431
ScrFI CCNGG 5 cut(s) 177, 336, 495, 602, 675
SduI GDGCHC 3 cut(s) 192, 763, 814
SetI ASST 9 cut(s) 152, 282, 294, 300, 308, 344, 471, 489, 499
SfaNI GCATC 5 cut(s) 599, 612, 699, 787, 872
SfoI GGCGCC 1 cut(s) 583
SinI GGWCC 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
SnaBI TACGTA 1 cut(s) 150
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 7 cut(s) 44, 513, 574, 754, 818, 824, 869
SsiI CCGC 4 cut(s) 73, 166, 180, 555
SspDI GGCGCC 1 cut(s) 581
SspI AATATT 1 cut(s) 410
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 5 cut(s) 175, 334, 493, 600, 673
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 3 cut(s) 152, 294, 489
TaqI TCGA 3 cut(s) 472, 763, 839
TasI AATT 7 cut(s) 44, 513, 574, 754, 818, 824, 869
TatI WGTACW 1 cut(s) 240
TauI GCSGC 2 cut(s) 183, 558
TfiI GAWTC 2 cut(s) 376, 609
Tru1I TTAA 4 cut(s) 254, 302, 366, 873
Tru9I TTAA 4 cut(s) 254, 302, 366, 873
TscAI CASTG 1 cut(s) 600
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 312, 481
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 17, 494
TspGWI ACGGA 3 cut(s) 369, 842, 846
TspRI CASTG 1 cut(s) 600
Vha464I CTTAAG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 277
XapI RAATTY 4 cut(s) 574, 818, 824, 869
XcmI CCANNNNNNNNNTGG 2 cut(s) 225, 447
XmiI GTMKAC 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.