Rh1BG322100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001015
Physical Location & Seq
Forward (+)
45488452 .. 45489030
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG322100.1

Sequence Viewer

Length: 429 bp
ATGAAGTCGTGGGAATTGACCCCCCCAAGTCGCAGCACCCTACCCGACTCCGAACGGGTCTACCAAATCGTGTGCCGCGTTGATGGACCCGAAGAAATAGAAGTCGACGCCTTTTATGAAAAGGCAAAAGGACCAAATCCTTCATGGTTCAAATATACTACAGTTCCTTTGGATGGCCACCCCTTAGGGGAGGGCATTCTGAACGTGGAGGTATTGAGATTTAATAGTAAGGAAAACCTCACCGACCCTGGAACCTCCGACTGCCCTAGCAGAGGGGCTGTCAGTCGGGTCAGGATTCCGTTGCCGACGACGATCAATGACAGAATAGAACGGCGGTGCGAACTTGTGAAGCTTGATGGGTCTGGCAACCTCAAGCTTGAAGGGTTTATAATTTTGTCAATGCGTCTGGAAGGGTTTACCTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

142

Amino Acids

16.03

Weight (kDa)

5.27

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
AccI GTMKAC 2 cut(s) 60, 105
AccII CGCG 1 cut(s) 78
AciI CCGC 2 cut(s) 76, 334
AcoI YGGCCR 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 108
AfiI CCNNNNNNNGG 3 cut(s) 173, 187, 272
AgsI TTSAA 2 cut(s) 151, 380
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 352, 376
AluI AGCT 2 cut(s) 352, 376
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 86, 131
AsuHPI GGTGA 1 cut(s) 232
AvaII GGWCC 2 cut(s) 86, 131
AxyI CCTNAGG 1 cut(s) 184
BalI TGGCCA 1 cut(s) 177
BbvI GCAGC 1 cut(s) 45
BccI CCATC 3 cut(s) 77, 167, 350
BceAI ACGGC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 2 cut(s) 34, 76
BlsI GCNGC 2 cut(s) 35, 77
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 2 cut(s) 86, 131
BmgT120I GGNCC 2 cut(s) 86, 131
BmiI GGNNCC 2 cut(s) 88, 253
BmrFI CCNGG 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 187, 272
Bse21I CCTNAGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 3 cut(s) 173, 187, 272
BseXI GCAGC 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 177
BslI CCNNNNNNNGG 3 cut(s) 173, 187, 272
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 2 cut(s) 76, 334
BspANI GGCC 1 cut(s) 177
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 88, 253
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 1 cut(s) 312
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 163
BstACI GRCGYC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 184
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 86, 131
CseI GACGC 2 cut(s) 116, 392
CviAII CATG 1 cut(s) 144
CviJI RGCY 4 cut(s) 177, 278, 352, 376
CviKI_1 RGCY 4 cut(s) 177, 278, 352, 376
DdeI CTNAG 1 cut(s) 184
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 86, 131
Eco81I CCTNAGG 1 cut(s) 184
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 247
FaeI CATG 1 cut(s) 147
FaiI YATR 4 cut(s) 117, 145, 156, 389
FatI CATG 1 cut(s) 143
FblI GTMKAC 2 cut(s) 60, 105
Fnu4HI GCNGC 2 cut(s) 34, 76
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 34, 76
FspBI CTAG 1 cut(s) 267
GluI GCNGC 2 cut(s) 34, 76
HaeIII GGCC 1 cut(s) 177
HgaI GACGC 2 cut(s) 116, 392
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 147
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 2 cut(s) 350, 374
HinfI GANTC 2 cut(s) 47, 295
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 3 cut(s) 61, 106, 417
Hpy188I TCNGA 3 cut(s) 52, 201, 259
Hpy188III TCNNGA 2 cut(s) 292, 407
Hpy8I GTNNAC 3 cut(s) 61, 106, 417
Hpy99I CGWCG 3 cut(s) 110, 310, 313
HpyAV CCTTC 3 cut(s) 150, 374, 404
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 147
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 5 cut(s) 234, 261, 277, 348, 392
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 204
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 1 cut(s) 104
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 2 cut(s) 14, 390
MluNI TGGCCA 1 cut(s) 177
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 6 cut(s) 184, 202, 248, 265, 266, 380
Mox20I TGGCCA 1 cut(s) 177
MscI TGGCCA 1 cut(s) 177
MseI TTAA 2 cut(s) 222, 427
Msp20I TGGCCA 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 78
NdeII GATC 1 cut(s) 312
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 2 cut(s) 88, 253
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 35, 77
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 88, 253
PspPI GGNCC 2 cut(s) 86, 131
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 222, 427
SatI GCNGC 2 cut(s) 34, 76
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 2 cut(s) 86, 131
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 249
SetI ASST 8 cut(s) 207, 213, 240, 257, 354, 372, 378, 422
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 2 cut(s) 86, 131
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 2 cut(s) 14, 390
SsiI CCGC 2 cut(s) 76, 334
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 105
TasI AATT 2 cut(s) 14, 390
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 2 cut(s) 222, 427
Tru9I TTAA 2 cut(s) 222, 427
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 3 cut(s) 17, 132, 132
TspGWI ACGGA 1 cut(s) 288
VpaK11BI GGWCC 2 cut(s) 86, 131
XagI CCTNNNNNAGG 1 cut(s) 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XmiI GTMKAC 2 cut(s) 60, 105
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.