Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Forward (+)

61516025 .. 61518887

Gene Structure 2863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGACGCCGCAAGTGGTGGAGTATGGCTGCGCAGGAGGTGGTGAGGACGTCTTCGAATCGGGCGAGAGAGGATTTTTGTATTTCGGTGGGCCGGTTCGGGTATTTTCCGAACGAGTTACGAAGGTGGCACGCGCGGTTCGCTTCCGGAATTTGGATCTTCAAGCGCCTAGCCGCCTCCTCTTGCCCTCCCACCACCGAAAGCCTCCCAATCTCGACCTCAAGATCGTCTCCGCCAAGCACTTGAAGAATGCCAATTGGAAGAACGACGACCTCAAGCCCTATGCCGTCTTCGGGGTCGACCCCGACCTCCTCCTCGCCACCAAATCCGACGATTTTGGCTCCACCCGACCCATCCGGAATGAGGCTTCACTTTCCCTCTCTCCTTCTCCCTCCCACGACTCCTTCCTCACCCTCGAAATCTTCCACTCCGAACCCTCCGACACTCCCGACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

152

Amino Acids

16.85

Weight (kDa)

5.93

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
Acc16I	TGCGCA	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	2 cut(s)	135, 137
AccIII	TCCGGA	2 cut(s)	147, 357
AciI	CCGC	4 cut(s)	11, 137, 175, 234
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	151
AcyI	GRCGYC	2 cut(s)	8, 51
AfiI	CCNNNNNNNGG	3 cut(s)	154, 294, 364
AgsI	TTSAA	2 cut(s)	164, 247
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	165
Aor13HI	TCCGGA	2 cut(s)	147, 357
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	3 cut(s)	35, 137, 169
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	56, 403
AsuII	TTCGAA	1 cut(s)	57
BbsI	GAAGAC	2 cut(s)	46, 283
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	170
BisI	GCNGC	3 cut(s)	11, 31, 175
BlsI	GCNGC	3 cut(s)	12, 32, 176
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	343
BpiI	GAAGAC	2 cut(s)	46, 283
Bpu14I	TTCGAA	1 cut(s)	57
BpuEI	CTTGAG	2 cut(s)	206, 260
BsaHI	GRCGYC	2 cut(s)	8, 51
BsaWI	WCCGGW	2 cut(s)	147, 357
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 294, 364
Bse118I	RCCGGY	1 cut(s)	94
BseAI	TCCGGA	2 cut(s)	147, 357
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	154, 294, 364
BseRI	GAGGAG	3 cut(s)	170, 302, 305
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	2 cut(s)	135, 137
BshFI	GGCC	1 cut(s)	94
BsiSI	CCGG	3 cut(s)	95, 148, 358
BslI	CCNNNNNNNGG	3 cut(s)	154, 294, 364
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	57
Bsp13I	TCCGGA	2 cut(s)	147, 357
Bsp143I	GATC	2 cut(s)	157, 225
BspACI	CCGC	4 cut(s)	11, 137, 175, 234
BspANI	GGCC	1 cut(s)	94
BspEI	TCCGGA	2 cut(s)	147, 357
BspFNI	CGCG	2 cut(s)	135, 137
BspLI	GGNNCC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BssMI	GATC	2 cut(s)	157, 225
BssNI	GRCGYC	2 cut(s)	8, 51
BstACI	GRCGYC	2 cut(s)	8, 51
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	2 cut(s)	135, 137
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	3 cut(s)	35, 137, 169
BstKTI	GATC	2 cut(s)	160, 228
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	2 cut(s)	157, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstUI	CGCG	2 cut(s)	135, 137
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	46, 283
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	3 cut(s)	35, 137, 169
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	92
CseI	GACGC	1 cut(s)	16
CviJI	RGCY	7 cut(s)	30, 94, 174, 205, 280, 342, 368
CviKI_1	RGCY	7 cut(s)	30, 94, 174, 205, 280, 342, 368
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	2 cut(s)	159, 227
DpnII	GATC	2 cut(s)	157, 225
EciI	GGCGGA	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	235
FaiI	YATR	2 cut(s)	27, 285
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	11, 31, 175
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	11, 31, 175
FspBI	CTAG	1 cut(s)	171
FspI	TGCGCA	1 cut(s)	34
GlaI	GCGC	3 cut(s)	34, 136, 168
GluI	GCNGC	3 cut(s)	11, 31, 175
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	3 cut(s)	95, 148, 358
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	3 cut(s)	35, 137, 169
Hin1I	GRCGYC	2 cut(s)	8, 51
Hin6I	GCGC	3 cut(s)	33, 135, 167
HinP1I	GCGC	3 cut(s)	33, 135, 167
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	2 cut(s)	59, 401
HpaII	CCGG	3 cut(s)	95, 148, 358
HphI	GGTGA	2 cut(s)	56, 403
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	4 cut(s)	112, 331, 433, 442
Hpy188III	TCNNGA	5 cut(s)	148, 215, 223, 358, 449
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	2 cut(s)	272, 335
HpyAV	CCTTC	3 cut(s)	118, 396, 415
HpyCH4IV	ACGT	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	2 cut(s)	8, 51
HspAI	GCGC	3 cut(s)	33, 135, 167
Kpn2I	TCCGGA	2 cut(s)	147, 357
Kzo9I	GATC	2 cut(s)	157, 225
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	4 cut(s)	21, 108, 161, 371
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	159, 227
MboI	GATC	2 cut(s)	157, 225
MboII	GAAGA	6 cut(s)	46, 152, 259, 274, 283, 415
MfeI	CAATTG	1 cut(s)	256
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	2 cut(s)	151, 256
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	354
MroI	TCCGGA	2 cut(s)	147, 357
MspI	CCGG	3 cut(s)	95, 148, 358
MunI	CAATTG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	256
MvnI	CGCG	2 cut(s)	135, 137
MwoI	GCNNNNNNNGC	1 cut(s)	141
NdeII	GATC	2 cut(s)	157, 225
NlaIV	GGNNCC	1 cut(s)	343
NsbI	TGCGCA	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	12, 32, 176
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	299
SatI	GCNGC	3 cut(s)	11, 31, 175
Sau3AI	GATC	2 cut(s)	157, 225
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	1 cut(s)	395
SetI	ASST	6 cut(s)	43, 54, 129, 222, 276, 312
SfuI	TTCGAA	1 cut(s)	57
SmlI	CTYRAG	2 cut(s)	221, 275
SmoI	CTYRAG	2 cut(s)	221, 275
Sse9I	AATT	2 cut(s)	151, 256
SsiI	CCGC	4 cut(s)	11, 137, 175, 234
SspMI	CTAG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	4 cut(s)	57, 216, 300, 417
TasI	AATT	2 cut(s)	151, 256
TauI	GCSGC	2 cut(s)	13, 177
TfiI	GAWTC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.