Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Forward (+)

59759783 .. 59761218

Gene Structure 1436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G031600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCCTCCTCTCGCCCTCCGCCGCCGAAGCCCCTCGATCTCGACCTCACGATCGTGTCCGCGAAGCACCTCAAGAACGTCAACTGGAAGAACGGCGACCTCAAGCCCTACGCCGTCTTCTGGGTCGACCCGGACCGCCGCCTCGCCACCAAATCCGACGACTCCGGCTCGACCCGACCCGTCTGGAACGAGCGCTTCACTCTCCCCCTCTCCCTCTCCCTCCACGACTCCTTCCTCACCCTCGAAATCTTCCACTCCAAACCCTCCGACACTCCCAAACCCTTAGTCGGCTCTCTCCGCCTCCCCCTCAAAGACCTACCCGACCCGGACGACTCCACCCGAATCCGATCCTTCGAGCTCATCCGCCCCTCCGGCCGCCCTCACGGTAAGATCCGCGTAAAGCTCGCCTTCCGGGAACGACCTCCCCCGCCAGATTACCATAATACCCCTCCTCCGCCGAGCTATTTCTACTCCACTGCCCCTATGCCTCCACCGCCTTCCGCTCGCGACTACAGGGCGTACTCGCCGTCGCCGTACAGCTCTTCCGTGCCAGCTTCGGCTCCAACTCCGGCAGCTTCGCCTCCGCCGCCGCCGTACCACTACAGCTCCTATTCAGATCCGTATTCGAGTTACTATCCGGGGTACTACTCCAGCGCGCCGCCGCCGATGCCACCGAGGCCGTTCTTCGATCGGCCAGTGAACTACGGCGGGCCAGGTGGGCCGTCCGGTGGGCCTTCTGCGCCTCTGGAGTACTCACACTATGATCAGAAGCCAAAGAGCGGGAAGATGGGGTTGGGAACCGGATTGGCTGTGGGCGCAGTGGCCGGAGCTCTAGGTGGACTGGCATTGGAAGAAGGAATAAGGTATGAAGAAGATAAGATTGCTGACAGGGTTGAGAATGACTTGGAGCGTGAGCAGCTGCGTGACGATTACAGCAGTTATCGGGCCGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

318

Amino Acids

35.09

Weight (kDa)

7.82

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	14 - 111	5.8e-13	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	503, 780
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	4 cut(s)	62, 396, 507, 656
AclWI	GGATC	3 cut(s)	342, 385, 611
AcoI	YGGCCR	3 cut(s)	373, 692, 822
AfaI	GTAC	5 cut(s)	521, 536, 596, 644, 752
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	120, 287, 728, 779
AjnI	CCWGG	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	2 cut(s)	776, 808
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	9 cut(s)	358, 403, 462, 540, 554, 575, 606, 830, 919
AluI	AGCT	9 cut(s)	358, 403, 462, 540, 554, 575, 606, 830, 919
Alw21I	GWGCWC	2 cut(s)	360, 832
AlwI	GGATC	3 cut(s)	342, 385, 611
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	9 cut(s)	3, 373, 677, 692, 710, 719, 731, 822, 945
ApeKI	GCWGC	3 cut(s)	572, 916, 919
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AspLEI	GCGC	5 cut(s)	195, 656, 658, 742, 818
AspS9I	GGNCC	5 cut(s)	133, 710, 719, 731, 945
AsuC2I	CCSGG	4 cut(s)	131, 326, 413, 639
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	360, 832
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	2 cut(s)	360, 832
BbvI	GCAGC	3 cut(s)	584, 906, 928
BccI	CCATC	1 cut(s)	781
BceAI	ACGGC	8 cut(s)	98, 109, 511, 517, 577, 664, 706, 721
BciT130I	CCWGG	1 cut(s)	714
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	4 cut(s)	131, 326, 413, 639
BfaI	CTAG	1 cut(s)	833
BfmI	CTRYAG	2 cut(s)	511, 601
BfoI	RGCGCY	1 cut(s)	196
BglI	GCCNNNNNGGC	3 cut(s)	372, 676, 718
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	5 cut(s)	131, 326, 413, 639, 714
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	5 cut(s)	133, 710, 719, 731, 945
BmiI	GGNNCC	2 cut(s)	561, 799
BmrFI	CCNGG	5 cut(s)	131, 326, 413, 639, 714
BmsI	GCATC	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	109
BpmI	CTGGAG	2 cut(s)	634, 767
BpuEI	CTTGAG	2 cut(s)	56, 86
BpuMI	CCSGG	4 cut(s)	131, 326, 413, 639
BsaJI	CCNNGG	2 cut(s)	638, 674
BsaWI	WCCGGW	2 cut(s)	725, 800
BsaXI	ACNNNNNCTCC	4 cut(s)	436, 466, 590, 620
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 287, 728, 779
Bse1I	ACTGG	3 cut(s)	89, 695, 846
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	2 cut(s)	638, 674
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	4 cut(s)	120, 287, 728, 779
BseNI	ACTGG	3 cut(s)	89, 695, 846
BsePI	GCGCGC	1 cut(s)	654
BseRI	GAGGAG	1 cut(s)	441
BseX3I	CGGCCG	1 cut(s)	373
BseXI	GCAGC	3 cut(s)	584, 906, 928
Bsh1236I	CGCG	4 cut(s)	62, 396, 507, 656
Bsh1285I	CGRYCG	3 cut(s)	54, 376, 691
BshFI	GGCC	9 cut(s)	5, 375, 679, 694, 712, 721, 733, 824, 947
BsiEI	CGRYCG	3 cut(s)	54, 376, 691
BsiHKAI	GWGCWC	2 cut(s)	360, 832
BslI	CCNNNNNNNGG	4 cut(s)	120, 287, 728, 779
BsnI	GGCC	9 cut(s)	5, 375, 679, 694, 712, 721, 733, 824, 947
Bsp1286I	GDGCHC	2 cut(s)	360, 832
Bsp143I	GATC	7 cut(s)	37, 51, 347, 390, 616, 688, 763
Bsp68I	TCGCGA	1 cut(s)	507
BspANI	GGCC	9 cut(s)	5, 375, 679, 694, 712, 721, 733, 824, 947
BspFNI	CGCG	4 cut(s)	62, 396, 507, 656
BspLI	GGNNCC	2 cut(s)	561, 799
BspPI	GGATC	3 cut(s)	342, 385, 611
BspQI	GCTCTTC	1 cut(s)	547
BsrBI	CCGCTC	2 cut(s)	503, 780
BsrI	ACTGG	3 cut(s)	89, 695, 846
BssECI	CCNNGG	2 cut(s)	638, 674
BssHII	GCGCGC	1 cut(s)	654
BssMI	GATC	7 cut(s)	37, 51, 347, 390, 616, 688, 763
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	547
BstC8I	GCNNGC	5 cut(s)	405, 505, 552, 656, 710
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	4 cut(s)	62, 396, 507, 656
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	5 cut(s)	195, 656, 658, 742, 818
BstKTI	GATC	7 cut(s)	40, 54, 350, 393, 619, 691, 766
BstMBI	GATC	7 cut(s)	37, 51, 347, 390, 616, 688, 763
BstMCI	CGRYCG	3 cut(s)	54, 376, 691
BstNI	CCWGG	1 cut(s)	714
BstSCI	CCNGG	5 cut(s)	129, 324, 411, 637, 712
BstSFI	CTRYAG	2 cut(s)	511, 601
BstUI	CGCG	4 cut(s)	62, 396, 507, 656
BstV1I	GCAGC	3 cut(s)	584, 906, 928
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	2 cut(s)	390, 616
BstYI	RGATCY	2 cut(s)	390, 616
BstZI	CGGCCG	1 cut(s)	373
BsuRI	GGCC	9 cut(s)	5, 375, 679, 694, 712, 721, 733, 824, 947
BtsCI	GGATG	1 cut(s)	360
BtsI	GCAGTG	2 cut(s)	474, 825
BtsIMutI	CAGTG	3 cut(s)	474, 702, 825
BtuMI	TCGCGA	1 cut(s)	507
Cac8I	GCNNGC	5 cut(s)	405, 505, 552, 656, 710
CfoI	GCGC	5 cut(s)	195, 656, 658, 742, 818
Cfr13I	GGNCC	5 cut(s)	133, 710, 719, 731, 945
CpoI	CGGWCCG	1 cut(s)	133
Csp6I	GTAC	5 cut(s)	520, 535, 595, 643, 751
CspI	CGGWCCG	1 cut(s)	133
CviQI	GTAC	5 cut(s)	520, 535, 595, 643, 751
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	7 cut(s)	39, 53, 349, 392, 618, 690, 765
DpnII	GATC	7 cut(s)	37, 51, 347, 390, 616, 688, 763
EaeI	YGGCCR	3 cut(s)	373, 692, 822
EagI	CGGCCG	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
EciI	GGCGGA	5 cut(s)	9, 287, 353, 444, 573
Ecl136II	GAGCTC	2 cut(s)	358, 830
EclXI	CGGCCG	1 cut(s)	373
Eco24I	GRGCYC	2 cut(s)	360, 832
Eco47I	GGWCC	1 cut(s)	133
Eco47III	AGCGCT	1 cut(s)	194
Eco52I	CGGCCG	1 cut(s)	373
Eco53kI	GAGCTC	2 cut(s)	358, 830
EcoICRI	GAGCTC	2 cut(s)	358, 830
EcoRII	CCWGG	1 cut(s)	712
EcoT38I	GRGCYC	2 cut(s)	360, 832
FaiI	YATR	4 cut(s)	441, 485, 762, 867
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FauI	CCCGC	3 cut(s)	435, 701, 773
FbaI	TGATCA	1 cut(s)	763
FblI	GTMKAC	1 cut(s)	126
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	2 cut(s)	360, 832
FspBI	CTAG	1 cut(s)	833
GlaI	GCGC	5 cut(s)	194, 655, 657, 741, 817
GsuI	CTGGAG	2 cut(s)	634, 767
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	9 cut(s)	5, 375, 679, 694, 712, 721, 733, 824, 947
HhaI	GCGC	5 cut(s)	195, 656, 658, 742, 818
Hin6I	GCGC	5 cut(s)	193, 654, 656, 740, 816
HinP1I	GCGC	5 cut(s)	193, 654, 656, 740, 816
HincII	GTYRAC	2 cut(s)	82, 127
HindII	GTYRAC	2 cut(s)	82, 127
HinfI	GANTC	4 cut(s)	161, 227, 332, 342
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	4 cut(s)	82, 127, 700, 839
Hpy188I	TCNGA	5 cut(s)	157, 268, 347, 616, 768
Hpy188III	TCNNGA	6 cut(s)	41, 49, 73, 184, 506, 746
Hpy8I	GTNNAC	4 cut(s)	82, 127, 700, 839
Hpy99I	CGWCG	2 cut(s)	161, 532
HpyAV	CCTTC	6 cut(s)	241, 361, 418, 507, 744, 848
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	78
HpyF3I	CTNAG	1 cut(s)	283
HpySE526I	ACGT	1 cut(s)	78
HspAI	GCGC	5 cut(s)	193, 654, 656, 740, 816
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	7 cut(s)	37, 51, 347, 390, 616, 688, 763
LguI	GCTCTTC	1 cut(s)	547
LmnI	GCTCC	4 cut(s)	565, 611, 827, 907
Lsp1109I	GCAGC	3 cut(s)	584, 906, 928
LweI	GCATC	1 cut(s)	657
MaeI	CTAG	1 cut(s)	833
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	629, 923
MalI	GATC	7 cut(s)	39, 53, 349, 392, 618, 690, 765
MbiI	CCGCTC	2 cut(s)	503, 780
MboI	GATC	7 cut(s)	37, 51, 347, 390, 616, 688, 763
MboII	GAAGA	9 cut(s)	100, 109, 241, 534, 676, 796, 863, 881, 884
MflI	RGATCY	2 cut(s)	390, 616
MhlI	GDGCHC	2 cut(s)	360, 832
MlyI	GAGTC	3 cut(s)	155, 221, 326
MmeI	TCCRAC	3 cut(s)	180, 291, 587
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	919
MspR9I	CCNGG	5 cut(s)	131, 326, 413, 639, 714
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	4 cut(s)	62, 396, 507, 656
NciI	CCSGG	4 cut(s)	131, 326, 413, 639
NdeII	GATC	7 cut(s)	37, 51, 347, 390, 616, 688, 763
NlaIV	GGNNCC	2 cut(s)	561, 799
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	1 cut(s)	923
NruI	TCGCGA	1 cut(s)	507
OliI	CACNNNNGTG	1 cut(s)	53
PauI	GCGCGC	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	342
PfoI	TCCNGGA	1 cut(s)	411
Ple19I	CGATCG	2 cut(s)	54, 691
PleI	GAGTC	3 cut(s)	155, 221, 326
PpsI	GAGTC	3 cut(s)	155, 221, 326
Psp124BI	GAGCTC	2 cut(s)	360, 832
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	2 cut(s)	561, 799
PspPI	GGNCC	5 cut(s)	133, 710, 719, 731, 945
PsuI	RGATCY	2 cut(s)	390, 616
PteI	GCGCGC	1 cut(s)	654
PvuI	CGATCG	2 cut(s)	54, 691
PvuII	CAGCTG	1 cut(s)	919
RruI	TCGCGA	1 cut(s)	507
RsaI	GTAC	5 cut(s)	521, 536, 596, 644, 752
RsaNI	GTAC	5 cut(s)	520, 535, 595, 643, 751
RseI	CAYNNNNRTG	1 cut(s)	53
Rsr2I	CGGWCCG	1 cut(s)	133
RsrII	CGGWCCG	1 cut(s)	133
SacI	GAGCTC	2 cut(s)	360, 832
SalI	GTCGAC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	547
Sau3AI	GATC	7 cut(s)	37, 51, 347, 390, 616, 688, 763
Sau96I	GGNCC	5 cut(s)	133, 710, 719, 731, 945
ScaI	AGTACT	1 cut(s)	752
SchI	GAGTC	3 cut(s)	155, 221, 326
ScrFI	CCNGG	5 cut(s)	131, 326, 413, 639, 714
SduI	GDGCHC	2 cut(s)	360, 832
SfaNI	GCATC	1 cut(s)	657
SfcI	CTRYAG	2 cut(s)	511, 601
SfiI	GGCCNNNNNGGCC	1 cut(s)	718
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	71, 101
SmoI	CTYRAG	2 cut(s)	71, 101
SspMI	CTAG	1 cut(s)	833
SstI	GAGCTC	2 cut(s)	360, 832
StyD4I	CCNGG	5 cut(s)	129, 324, 411, 637, 712
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	8 cut(s)	36, 42, 126, 170, 243, 354, 626, 687
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	7 cut(s)	25, 141, 378, 589, 592, 661, 664
TfiI	GAWTC	1 cut(s)	342
TscAI	CASTG	3 cut(s)	481, 702, 825
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	3 cut(s)	572, 916, 919
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	1 cut(s)	882
TspGWI	ACGGA	2 cut(s)	535, 609
TspRI	CASTG	3 cut(s)	481, 702, 825
VpaK11BI	GGWCC	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	833
ZrmI	AGTACT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.