Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003612.1

Orthogroup ID

OG0001015

Physical Location & Seq

Genomic Coordinates Reverse (-)

8564 .. 9523

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003612.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atggcctcctctcgccctccgccgccgaagcccctcgatctcgacctcacgatcgtgtccgcgaagcacctcaagaacgtcaactggaagaacggcgacctcaagccctacgccgtcttctgggtcgacccggaccgccgcctcgccaccaaatccgatgactccggctcgacccgacccgtctggaacgagcgcttcactctccccctctccctctccctccacgactccttcctcaccctcgaaatcttccactccaaaccctccgacactcccaaacccttagtcggctctctccgcctccccctcaaagacctacccgacccggacgactccacccgaatccgatccttcgagctcatccgcccctccggccgccctcacggtaagatccgcgtaaagctcgccttccgggaacgacctcccccgccagattaccataatacccctcctcctcctccgagctatttctactccactgcccctatgcctccaccgccttccgctcgcgactacagggcgtactcgccgtcgccgtacagctcttccgtgccagcttcggctccaactccggcagcttcgcctccgccgccgccgtaccactacagctcctattcagatccgtattcgagttactatccggggtactactccagcgcgccgccgccgatgccaccgaggccgttcttcgatcggccagtgaactacggcgggccaggtgggccgtccggtgggccttctgctcctctggagtactcacactatgatcagaagccaaagagcgggaagatggggttgggaaccggattggctgtgggcgcagtggccggagctctaggtggactggcattggaagaaggaataaggtatgaagaagataagattgctgacagggttgagaatgacttggagcgtgagcagctgcgtgacgattacagcaattatcgggccgattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Transferase

Protein Analysis

319

Amino Acids

35.22

Weight (kDa)

7.82

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07310
fragaria_vesca	FvH4_1g11890 FvH4_6g44890 FvH4_7g24041 FvH4_7g24042 FvH4_7g24050
malus_domestica	MD01G1147700.v1.1 MD07G1214700.v1.1
prunus_persica	Prupe.2G246500_v2.0.a1 Prupe.2G246600_v2.0.a1
pyrus_communis	pycom01g16640 pycom01g16650 pycom07g19710
rosa_chinensis	RchiOBHm_Chr1g0369451 RchiOBHm_Chr4g0411991
rosa_laevigata	RLG00000027125 RLG00000027126 RLG00000027127 RLG00000027128
rosa_multiflora	Rmu_sc0000039.1_g000010 Rmu_sc0001772.1_g000068 Rmu_sc0001792.1_g000008 Rmu_sc0002235.1_g000074 Rmu_sc0003605.1_g000040 Rmu_sc0003612.1_g000002 Rmu_sc0010426.1_g000026 Rmu_ssc0000189.1_g000035 Rmu_ssc0000244.1_g000021 Rmu_ssc0000286.1_g000008
rosa_roxburghii	Rroxscaffold_3G00268440 Rroxscaffold_4G00287610 Rroxscaffold_4G00287620 Rroxscaffold_4G00287640 Rroxscaffold_5G00356670
rosa_rugosa	Rorug01G0350300 Rorug01G0350600 Rorug01G0350700 Rorug01G0350800 Rorug01G0350900
rosa_samantha	Rh1AG358400 Rh1AG358600 Rh1AG358700 Rh1AG358800 Rh1BG322100 Rh1BG322200 Rh1BG322300 Rh1BG322400 Rh1BG322500 Rh1BG322600 Rh1CG335800 Rh1CG335900 Rh1CG336000 Rh1DG352800 Rh1DG352900 Rh1DG353000 Rh1DG353100 Rh1DG353200 Rh1DG353300 Rh5AG153800 Rh6AG460200
rosa_wichuraiana	Rw1G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	506, 783
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	4 cut(s)	62, 396, 510, 659
AclWI	GGATC	3 cut(s)	342, 385, 614
AcoI	YGGCCR	3 cut(s)	373, 695, 825
AfaI	GTAC	5 cut(s)	524, 539, 599, 647, 755
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	120, 287, 731, 782
AjnI	CCWGG	1 cut(s)	715
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	9 cut(s)	358, 403, 465, 543, 557, 578, 609, 833, 922
AluI	AGCT	9 cut(s)	358, 403, 465, 543, 557, 578, 609, 833, 922
Alw21I	GWGCWC	2 cut(s)	360, 835
AlwI	GGATC	3 cut(s)	342, 385, 614
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	9 cut(s)	3, 373, 680, 695, 713, 722, 734, 825, 948
ApeKI	GCWGC	3 cut(s)	575, 919, 922
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AspLEI	GCGC	4 cut(s)	195, 659, 661, 821
AspS9I	GGNCC	5 cut(s)	133, 713, 722, 734, 948
AsuC2I	CCSGG	4 cut(s)	131, 326, 413, 642
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	360, 835
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	2 cut(s)	360, 835
BbvI	GCAGC	3 cut(s)	587, 909, 931
BccI	CCATC	1 cut(s)	784
BceAI	ACGGC	8 cut(s)	98, 109, 514, 520, 580, 667, 709, 724
BciT130I	CCWGG	1 cut(s)	717
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	4 cut(s)	131, 326, 413, 642
BfaI	CTAG	1 cut(s)	836
BfmI	CTRYAG	2 cut(s)	514, 604
BfoI	RGCGCY	1 cut(s)	196
BglI	GCCNNNNNGGC	3 cut(s)	372, 679, 721
BmcAI	AGTACT	1 cut(s)	755
Bme1390I	CCNGG	5 cut(s)	131, 326, 413, 642, 717
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	5 cut(s)	133, 713, 722, 734, 948
BmiI	GGNNCC	2 cut(s)	564, 802
BmrFI	CCNGG	5 cut(s)	131, 326, 413, 642, 717
BmsI	GCATC	1 cut(s)	660
BpiI	GAAGAC	1 cut(s)	109
BpmI	CTGGAG	2 cut(s)	637, 770
BpuEI	CTTGAG	2 cut(s)	56, 86
BpuMI	CCSGG	4 cut(s)	131, 326, 413, 642
BsaJI	CCNNGG	2 cut(s)	641, 677
BsaWI	WCCGGW	2 cut(s)	728, 803
BsaXI	ACNNNNNCTCC	4 cut(s)	436, 466, 593, 623
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 287, 731, 782
Bse1I	ACTGG	3 cut(s)	89, 698, 849
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	2 cut(s)	641, 677
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	4 cut(s)	120, 287, 731, 782
BseNI	ACTGG	3 cut(s)	89, 698, 849
BsePI	GCGCGC	1 cut(s)	657
BseRI	GAGGAG	4 cut(s)	441, 444, 447, 735
BseX3I	CGGCCG	1 cut(s)	373
BseXI	GCAGC	3 cut(s)	587, 909, 931
Bsh1236I	CGCG	4 cut(s)	62, 396, 510, 659
Bsh1285I	CGRYCG	3 cut(s)	54, 376, 694
BshFI	GGCC	9 cut(s)	5, 375, 682, 697, 715, 724, 736, 827, 950
BsiEI	CGRYCG	3 cut(s)	54, 376, 694
BsiHKAI	GWGCWC	2 cut(s)	360, 835
BslI	CCNNNNNNNGG	4 cut(s)	120, 287, 731, 782
BsnI	GGCC	9 cut(s)	5, 375, 682, 697, 715, 724, 736, 827, 950
Bsp1286I	GDGCHC	2 cut(s)	360, 835
Bsp143I	GATC	7 cut(s)	37, 51, 347, 390, 619, 691, 766
Bsp68I	TCGCGA	1 cut(s)	510
BspANI	GGCC	9 cut(s)	5, 375, 682, 697, 715, 724, 736, 827, 950
BspFNI	CGCG	4 cut(s)	62, 396, 510, 659
BspLI	GGNNCC	2 cut(s)	564, 802
BspPI	GGATC	3 cut(s)	342, 385, 614
BspQI	GCTCTTC	1 cut(s)	550
BsrBI	CCGCTC	2 cut(s)	506, 783
BsrI	ACTGG	3 cut(s)	89, 698, 849
BssECI	CCNNGG	2 cut(s)	641, 677
BssHII	GCGCGC	1 cut(s)	657
BssMI	GATC	7 cut(s)	37, 51, 347, 390, 619, 691, 766
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	550
BstC8I	GCNNGC	5 cut(s)	405, 508, 555, 659, 713
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	4 cut(s)	62, 396, 510, 659
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	4 cut(s)	195, 659, 661, 821
BstKTI	GATC	7 cut(s)	40, 54, 350, 393, 622, 694, 769
BstMBI	GATC	7 cut(s)	37, 51, 347, 390, 619, 691, 766
BstMCI	CGRYCG	3 cut(s)	54, 376, 694
BstNI	CCWGG	1 cut(s)	717
BstSCI	CCNGG	5 cut(s)	129, 324, 411, 640, 715
BstSFI	CTRYAG	2 cut(s)	514, 604
BstUI	CGCG	4 cut(s)	62, 396, 510, 659
BstV1I	GCAGC	3 cut(s)	587, 909, 931
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	2 cut(s)	390, 619
BstYI	RGATCY	2 cut(s)	390, 619
BstZI	CGGCCG	1 cut(s)	373
BsuRI	GGCC	9 cut(s)	5, 375, 682, 697, 715, 724, 736, 827, 950
BtsCI	GGATG	1 cut(s)	360
BtsI	GCAGTG	2 cut(s)	477, 828
BtsIMutI	CAGTG	3 cut(s)	477, 705, 828
BtuMI	TCGCGA	1 cut(s)	510
Cac8I	GCNNGC	5 cut(s)	405, 508, 555, 659, 713
CfoI	GCGC	4 cut(s)	195, 659, 661, 821
Cfr13I	GGNCC	5 cut(s)	133, 713, 722, 734, 948
CpoI	CGGWCCG	1 cut(s)	133
Csp6I	GTAC	5 cut(s)	523, 538, 598, 646, 754
CspI	CGGWCCG	1 cut(s)	133
CviQI	GTAC	5 cut(s)	523, 538, 598, 646, 754
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	7 cut(s)	39, 53, 349, 392, 621, 693, 768
DpnII	GATC	7 cut(s)	37, 51, 347, 390, 619, 691, 766
EaeI	YGGCCR	3 cut(s)	373, 695, 825
EagI	CGGCCG	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
EciI	GGCGGA	4 cut(s)	9, 287, 353, 576
Ecl136II	GAGCTC	2 cut(s)	358, 833
EclXI	CGGCCG	1 cut(s)	373
Eco24I	GRGCYC	2 cut(s)	360, 835
Eco47I	GGWCC	1 cut(s)	133
Eco47III	AGCGCT	1 cut(s)	194
Eco52I	CGGCCG	1 cut(s)	373
Eco53kI	GAGCTC	2 cut(s)	358, 833
EcoICRI	GAGCTC	2 cut(s)	358, 833
EcoRII	CCWGG	1 cut(s)	715
EcoT38I	GRGCYC	2 cut(s)	360, 835
FaiI	YATR	4 cut(s)	441, 488, 765, 870
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FauI	CCCGC	3 cut(s)	435, 704, 776
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	126
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	2 cut(s)	360, 835
FspBI	CTAG	1 cut(s)	836
GlaI	GCGC	4 cut(s)	194, 658, 660, 820
GsuI	CTGGAG	2 cut(s)	637, 770
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	9 cut(s)	5, 375, 682, 697, 715, 724, 736, 827, 950
HhaI	GCGC	4 cut(s)	195, 659, 661, 821
Hin6I	GCGC	4 cut(s)	193, 657, 659, 819
HinP1I	GCGC	4 cut(s)	193, 657, 659, 819
HincII	GTYRAC	2 cut(s)	82, 127
HindII	GTYRAC	2 cut(s)	82, 127
HinfI	GANTC	4 cut(s)	161, 227, 332, 342
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	4 cut(s)	82, 127, 703, 842
Hpy188I	TCNGA	6 cut(s)	157, 268, 347, 462, 619, 771
Hpy188III	TCNNGA	6 cut(s)	41, 49, 73, 184, 509, 749
Hpy8I	GTNNAC	4 cut(s)	82, 127, 703, 842
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	6 cut(s)	241, 361, 418, 510, 747, 851
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	78
HpyF3I	CTNAG	1 cut(s)	283
HpySE526I	ACGT	1 cut(s)	78
HspAI	GCGC	4 cut(s)	193, 657, 659, 819
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	7 cut(s)	37, 51, 347, 390, 619, 691, 766
LguI	GCTCTTC	1 cut(s)	550
LmnI	GCTCC	5 cut(s)	568, 614, 748, 830, 910
Lsp1109I	GCAGC	3 cut(s)	587, 909, 931
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	1 cut(s)	836
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	632, 926
MalI	GATC	7 cut(s)	39, 53, 349, 392, 621, 693, 768
MbiI	CCGCTC	2 cut(s)	506, 783
MboI	GATC	7 cut(s)	37, 51, 347, 390, 619, 691, 766
MboII	GAAGA	9 cut(s)	100, 109, 241, 537, 679, 799, 866, 884, 887
MflI	RGATCY	2 cut(s)	390, 619
MhlI	GDGCHC	2 cut(s)	360, 835
MluCI	AATT	1 cut(s)	940
MlyI	GAGTC	3 cut(s)	155, 221, 326
MmeI	TCCRAC	2 cut(s)	291, 590
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	922
MspR9I	CCNGG	5 cut(s)	131, 326, 413, 642, 717
MvaI	CCWGG	1 cut(s)	717
MvnI	CGCG	4 cut(s)	62, 396, 510, 659
NciI	CCSGG	4 cut(s)	131, 326, 413, 642
NdeII	GATC	7 cut(s)	37, 51, 347, 390, 619, 691, 766
NlaIV	GGNNCC	2 cut(s)	564, 802
NmuCI	GTSAC	1 cut(s)	926
NruI	TCGCGA	1 cut(s)	510
OliI	CACNNNNGTG	1 cut(s)	53
PauI	GCGCGC	1 cut(s)	657
PciSI	GCTCTTC	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	342
PfoI	TCCNGGA	1 cut(s)	411
Ple19I	CGATCG	2 cut(s)	54, 694
PleI	GAGTC	3 cut(s)	155, 221, 326
PpsI	GAGTC	3 cut(s)	155, 221, 326
Psp124BI	GAGCTC	2 cut(s)	360, 835
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	2 cut(s)	564, 802
PspPI	GGNCC	5 cut(s)	133, 713, 722, 734, 948
PsuI	RGATCY	2 cut(s)	390, 619
PteI	GCGCGC	1 cut(s)	657
PvuI	CGATCG	2 cut(s)	54, 694
PvuII	CAGCTG	1 cut(s)	922
RruI	TCGCGA	1 cut(s)	510
RsaI	GTAC	5 cut(s)	524, 539, 599, 647, 755
RsaNI	GTAC	5 cut(s)	523, 538, 598, 646, 754
RseI	CAYNNNNRTG	1 cut(s)	53
Rsr2I	CGGWCCG	1 cut(s)	133
RsrII	CGGWCCG	1 cut(s)	133
SacI	GAGCTC	2 cut(s)	360, 835
SalI	GTCGAC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	550
Sau3AI	GATC	7 cut(s)	37, 51, 347, 390, 619, 691, 766
Sau96I	GGNCC	5 cut(s)	133, 713, 722, 734, 948
ScaI	AGTACT	1 cut(s)	755
SchI	GAGTC	3 cut(s)	155, 221, 326
ScrFI	CCNGG	5 cut(s)	131, 326, 413, 642, 717
SduI	GDGCHC	2 cut(s)	360, 835
SfaNI	GCATC	1 cut(s)	660
SfcI	CTRYAG	2 cut(s)	514, 604
SfiI	GGCCNNNNNGGCC	1 cut(s)	721
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	71, 101
SmoI	CTYRAG	2 cut(s)	71, 101
Sse9I	AATT	1 cut(s)	940
SspMI	CTAG	1 cut(s)	836
SstI	GAGCTC	2 cut(s)	360, 835
StyD4I	CCNGG	5 cut(s)	129, 324, 411, 640, 715
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	8 cut(s)	36, 42, 126, 170, 243, 354, 629, 690
TasI	AATT	1 cut(s)	940
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	7 cut(s)	25, 141, 378, 592, 595, 664, 667
TfiI	GAWTC	1 cut(s)	342
TscAI	CASTG	3 cut(s)	484, 705, 828
TseFI	GTSAC	1 cut(s)	926
TseI	GCWGC	3 cut(s)	575, 919, 922
Tsp45I	GTSAC	1 cut(s)	926
TspDTI	ATGAA	1 cut(s)	885
TspGWI	ACGGA	2 cut(s)	538, 612
TspRI	CASTG	3 cut(s)	484, 705, 828
VpaK11BI	GGWCC	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	836
ZrmI	AGTACT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.