FvH4_7g24041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001015
Physical Location & Seq
Forward (+)
18616406 .. 18617219
814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24041.t1

Sequence Viewer

Length: 675 bp
ATGACCTTATTATCACAATTTATGGGTCTCATAAGAAAGTTGCTATCAAAACTTCGTTCCCTAAATCCTAAAAACCCGTACTTACGGCTCCCCAAATATGATGACAACAAACCGTGTAAGCAGCCACACTATTTTGCTTACACCGGCGGTTTTCGGGAATCCTCGGTCCTGATGATGAAGCAGAAGAAGATGAAAGAGAAAGTTATAGAGAAGAAAGTTCATGTTAAGTCCTTGAAGATTTGGATCAAAGAGGTCGTGGGAATTGACCCCCCAAGTCACAGCACCCTACCCAACTCCGAACGGGTCTATCAAATCGTGTGCCGGGTTGACGGACCAGAAGAAATAGAAGTCGAAGGCTTTAATAATAAGGTAAAAGGACCAAACCCTTCATGGTTAAGATATACGACTGTTCCTTTGGATGGCCACCCCTTAGGGGAGGGGTTTCTGAACGTGGAGGTCTTGAGGTTTAATAGTAAGGAAAACCTCACCGACCCCGGAACCTCCGGCTGTCCTAGCATAGGGGCTATCAGTCGGGTCAGGATTCCTTTGCCGGCAAGGATCAATCAGAAAATACCACGGCAGTGTGAGCTTGTGAAGCTTGATGGGTCTGGCAACCTCAAGATTGAGGGGTTTATAGTTTTGGCAATGTGTCTGGAAGGGTTTACCTATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

225

Amino Acids

25.4

Weight (kDa)

9.5

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AclWI GGATC 2 cut(s) 251, 566
AcoI YGGCCR 1 cut(s) 421
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 3 cut(s) 419, 433, 518
AgsI TTSAA 1 cut(s) 235
AleI CACNNNNGTG 1 cut(s) 580
AluBI AGCT 2 cut(s) 589, 598
AluI AGCT 2 cut(s) 589, 598
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 251, 566
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 121
ArsI GACNNNNNNTTYG 2 cut(s) 397, 429
AspS9I GGNCC 3 cut(s) 166, 332, 377
AsuC2I CCSGG 2 cut(s) 323, 495
AsuHPI GGTGA 1 cut(s) 478
AvaII GGWCC 3 cut(s) 166, 332, 377
AxyI CCTNAGG 1 cut(s) 430
BalI TGGCCA 1 cut(s) 423
BbvI GCAGC 1 cut(s) 133
BccI CCATC 2 cut(s) 413, 596
BceAI ACGGC 2 cut(s) 101, 593
BcnI CCSGG 2 cut(s) 323, 495
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 513
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 2 cut(s) 323, 495
Bme18I GGWCC 3 cut(s) 166, 332, 377
BmgT120I GGNCC 3 cut(s) 166, 332, 377
BmiI GGNNCC 2 cut(s) 89, 499
BmrFI CCNGG 2 cut(s) 323, 495
BpuEI CTTGAG 2 cut(s) 481, 602
BpuMI CCSGG 2 cut(s) 323, 495
BsaBI GATNNNNATC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 162, 493, 575
Bsc4I CCNNNNNNNGG 3 cut(s) 419, 433, 518
Bse118I RCCGGY 2 cut(s) 143, 550
Bse21I CCTNAGG 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 651
Bse8I GATNNNNATC 1 cut(s) 242
BseDI CCNNGG 3 cut(s) 162, 493, 575
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 3 cut(s) 419, 433, 518
BseMI GCAATG 1 cut(s) 651
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 423
BsiSI CCGG 5 cut(s) 144, 322, 495, 504, 551
BslI CCNNNNNNNGG 3 cut(s) 419, 433, 518
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 1 cut(s) 423
Bso31I GGTCTC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 243, 558
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 423
BspLI GGNNCC 2 cut(s) 89, 499
BspPI GGATC 2 cut(s) 251, 566
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 651
BsrFI RCCGGY 2 cut(s) 143, 550
BssAI RCCGGY 2 cut(s) 143, 550
BssECI CCNNGG 3 cut(s) 162, 493, 575
BssMI GATC 2 cut(s) 243, 558
Bst4CI ACNGT 2 cut(s) 114, 409
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 1 cut(s) 430
BstDSI CCRYGG 1 cut(s) 575
BstENI CCTNNNNNAGG 1 cut(s) 516
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 2 cut(s) 246, 561
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 243, 558
BstMWI GCNNNNNNNGC 3 cut(s) 513, 586, 595
BstSCI CCNGG 2 cut(s) 321, 493
BstV1I GCAGC 1 cut(s) 133
Bsu36I CCTNAGG 1 cut(s) 430
BsuRI GGCC 1 cut(s) 423
BtgI CCRYGG 1 cut(s) 575
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 587
BtsIMutI CAGTG 1 cut(s) 587
Cac8I GCNNGC 1 cut(s) 552
Cfr10I RCCGGY 2 cut(s) 143, 550
Cfr13I GGNCC 3 cut(s) 166, 332, 377
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 221, 390
CviJI RGCY 8 cut(s) 88, 124, 357, 423, 507, 524, 589, 598
CviKI_1 RGCY 8 cut(s) 88, 124, 357, 423, 507, 524, 589, 598
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 430
DpnI GATC 2 cut(s) 245, 560
DpnII GATC 2 cut(s) 243, 558
EaeI YGGCCR 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 3 cut(s) 166, 332, 377
Eco81I CCTNAGG 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 516
FaeI CATG 2 cut(s) 224, 393
FaiI YATR 9 cut(s) 23, 32, 99, 206, 222, 391, 402, 518, 635
FatI CATG 2 cut(s) 220, 389
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 1 cut(s) 513
GluI GCNGC 1 cut(s) 122
HaeIII GGCC 1 cut(s) 423
HapII CCGG 5 cut(s) 144, 322, 495, 504, 551
Hin1II CATG 2 cut(s) 224, 393
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 2 cut(s) 158, 541
HpaII CCGG 5 cut(s) 144, 322, 495, 504, 551
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 2 cut(s) 328, 663
Hpy188I TCNGA 3 cut(s) 298, 447, 567
Hpy188III TCNNGA 6 cut(s) 155, 169, 460, 538, 619, 653
Hpy8I GTNNAC 2 cut(s) 328, 663
HpyAV CCTTC 3 cut(s) 347, 396, 650
HpyCH4III ACNGT 2 cut(s) 114, 409
HpyCH4IV ACGT 1 cut(s) 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 513, 586, 595
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 2 cut(s) 224, 393
KroI GCCGGC 1 cut(s) 550
KroNI GCCGGC 1 cut(s) 552
Kzo9I GATC 2 cut(s) 243, 558
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 1 cut(s) 133
MaeI CTAG 1 cut(s) 513
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 245, 560
MboI GATC 2 cut(s) 243, 558
MboII GAAGA 5 cut(s) 196, 199, 223, 247, 350
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 2 cut(s) 17, 261
MluNI TGGCCA 1 cut(s) 423
MnlI CCTC 9 cut(s) 172, 244, 430, 448, 456, 494, 511, 619, 626
Mox20I TGGCCA 1 cut(s) 423
MroNI GCCGGC 1 cut(s) 550
MscI TGGCCA 1 cut(s) 423
MseI TTAA 5 cut(s) 225, 360, 395, 468, 673
MslI CAYNNNNRTG 1 cut(s) 580
Msp20I TGGCCA 1 cut(s) 423
MspI CCGG 5 cut(s) 144, 322, 495, 504, 551
MspR9I CCNGG 2 cut(s) 323, 495
MwoI GCNNNNNNNGC 3 cut(s) 513, 586, 595
NaeI GCCGGC 1 cut(s) 552
NciI CCSGG 2 cut(s) 323, 495
NdeII GATC 2 cut(s) 243, 558
NgoMIV GCCGGC 1 cut(s) 550
NlaIII CATG 2 cut(s) 224, 393
NlaIV GGNNCC 2 cut(s) 89, 499
NmuCI GTSAC 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 580
PdiI GCCGGC 1 cut(s) 552
PfeI GAWTC 2 cut(s) 158, 541
PkrI GCNGC 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 89, 499
PspPI GGNCC 3 cut(s) 166, 332, 377
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 580
SaqAI TTAA 5 cut(s) 225, 360, 395, 468, 673
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 2 cut(s) 243, 558
Sau96I GGNCC 3 cut(s) 166, 332, 377
ScrFI CCNGG 2 cut(s) 323, 495
SgrAI CRCCGGYG 1 cut(s) 143
SinI GGWCC 3 cut(s) 166, 332, 377
SmiMI CAYNNNNRTG 1 cut(s) 580
SmlI CTYRAG 2 cut(s) 460, 617
SmoI CTYRAG 2 cut(s) 460, 617
Sse9I AATT 2 cut(s) 17, 261
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 321, 493
TaaI ACNGT 2 cut(s) 114, 409
TaiI ACGT 1 cut(s) 453
TaqI TCGA 1 cut(s) 351
TaqII GACCGA 1 cut(s) 154
TasI AATT 2 cut(s) 17, 261
TfiI GAWTC 2 cut(s) 158, 541
Tru1I TTAA 5 cut(s) 225, 360, 395, 468, 673
Tru9I TTAA 5 cut(s) 225, 360, 395, 468, 673
TscAI CASTG 1 cut(s) 587
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 4 cut(s) 191, 206, 209, 378
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 587
VpaK11BI GGWCC 3 cut(s) 166, 332, 377
XagI CCTNNNNNAGG 1 cut(s) 516
XcmI CCANNNNNNNNNTGG 1 cut(s) 387
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.